Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04507 and MPMX19_04508 overlap by 7 nucleotides MPMX19_04508 and MPMX19_04509 are separated by 12 nucleotides MPMX19_04509 and MPMX19_04510 are separated by 14 nucleotides
MPMX19_04507: MPMX19_04507 - Putative phosphoserine phosphatase 2, at 876,744 to 877,271
_04507
MPMX19_04508: MPMX19_04508 - Phosphoglycolate phosphatase, at 877,265 to 877,957
_04508
MPMX19_04509: MPMX19_04509 - Spermidine/putrescine import ATP-binding protein PotA, at 877,970 to 879,085
_04509
MPMX19_04510: MPMX19_04510 - hypothetical protein, at 879,100 to 880,812
_04510
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.503 kb on + strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.653 kb on + strand, within MPMX19_04508 at 877.654 kb on - strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 878.100 kb on + strand, within MPMX19_04509 at 878.101 kb on - strand, within MPMX19_04509 at 878.376 kb on + strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.377 kb on - strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.790 kb on + strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 878.791 kb on - strand, within MPMX19_04509 at 879.003 kb on + strand at 879.003 kb on + strand at 879.004 kb on - strand at 879.004 kb on - strand at 879.004 kb on - strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.156 kb on - strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.233 kb on + strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.234 kb on - strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.239 kb on + strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.240 kb on - strand at 879.248 kb on + strand at 879.249 kb on - strand at 879.474 kb on - strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.560 kb on + strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.561 kb on - strand, within MPMX19_04510 at 879.575 kb on + strand, within MPMX19_04510 at 879.576 kb on - strand, within MPMX19_04510 at 879.576 kb on - strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.626 kb on + strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.627 kb on - strand, within MPMX19_04510 at 879.671 kb on + strand, within MPMX19_04510 at 879.672 kb on - strand, within MPMX19_04510 at 879.672 kb on - strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.722 kb on + strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.723 kb on - strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.743 kb on + strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.744 kb on - strand, within MPMX19_04510 at 879.773 kb on + strand, within MPMX19_04510 at 879.773 kb on + strand, within MPMX19_04510 at 879.774 kb on - strand, within MPMX19_04510 at 879.774 kb on - strand, within MPMX19_04510 at 879.894 kb on - strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.965 kb on + strand, within MPMX19_04510 at 879.966 kb on - strand, within MPMX19_04510 at 879.966 kb on - strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.043 kb on + strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.044 kb on - strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510 at 880.085 kb on + strand, within MPMX19_04510
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 877,347 + MPMX19_04508 0.12 +0.3 877,347 + MPMX19_04508 0.12 +1.4 877,347 + MPMX19_04508 0.12 -0.5 877,347 + MPMX19_04508 0.12 -1.6 877,348 - MPMX19_04508 0.12 -0.6 877,348 - MPMX19_04508 0.12 -0.5 877,348 - MPMX19_04508 0.12 -0.8 877,348 - MPMX19_04508 0.12 -0.9 877,503 + MPMX19_04508 0.34 +1.6 877,504 - MPMX19_04508 0.34 -0.6 877,504 - MPMX19_04508 0.34 -1.7 877,653 + MPMX19_04508 0.56 -0.3 877,654 - MPMX19_04508 0.56 +0.2 877,686 + MPMX19_04508 0.61 -1.1 877,686 + MPMX19_04508 0.61 +0.8 877,687 - MPMX19_04508 0.61 -0.4 877,687 - MPMX19_04508 0.61 -1.7 877,687 - MPMX19_04508 0.61 -0.7 877,971 + -0.6 877,971 + -0.4 877,971 + +1.0 877,971 + +0.6 877,971 + -1.0 877,971 + -0.8 877,972 - -1.6 877,972 - +0.6 877,972 - +0.2 877,972 - +0.3 877,972 - +0.0 878,100 + MPMX19_04509 0.12 +0.2 878,101 - MPMX19_04509 0.12 -0.8 878,376 + MPMX19_04509 0.36 -1.6 878,377 - MPMX19_04509 0.36 -1.2 878,377 - MPMX19_04509 0.36 +0.2 878,377 - MPMX19_04509 0.36 +0.3 878,790 + MPMX19_04509 0.73 +1.2 878,790 + MPMX19_04509 0.73 -1.4 878,791 - MPMX19_04509 0.74 +0.3 878,791 - MPMX19_04509 0.74 -1.5 878,791 - MPMX19_04509 0.74 +0.6 878,791 - MPMX19_04509 0.74 -1.0 878,791 - MPMX19_04509 0.74 +0.7 878,791 - MPMX19_04509 0.74 +0.6 879,003 + +0.3 879,003 + +1.2 879,004 - -0.1 879,004 - -0.8 879,004 - -0.1 879,155 + +0.3 879,155 + -1.9 879,155 + +0.2 879,155 + -0.5 879,155 + -1.1 879,155 + +0.2 879,155 + -0.0 879,155 + -0.5 879,156 - -0.7 879,156 - -1.5 879,156 - -0.8 879,156 - -0.1 879,156 - +0.8 879,156 - -0.8 879,156 - +0.2 879,156 - +0.2 879,156 - -1.4 879,156 - +0.0 879,156 - -0.3 879,233 + -0.8 879,233 + -1.7 879,233 + -1.6 879,233 + -0.8 879,234 - -0.8 879,234 - -1.1 879,234 - -0.4 879,234 - -0.2 879,234 - +0.3 879,234 - +0.4 879,234 - -0.2 879,234 - -0.0 879,234 - -1.4 879,239 + -0.0 879,239 + -0.5 879,239 + -0.4 879,239 + +0.4 879,239 + -0.0 879,240 - -1.2 879,240 - -0.6 879,240 - -1.3 879,240 - -2.1 879,240 - -0.6 879,240 - -2.6 879,240 - -0.2 879,240 - -0.2 879,240 - +0.0 879,240 - +0.2 879,240 - +0.0 879,240 - -0.1 879,240 - -0.7 879,248 + -1.1 879,249 - -0.6 879,474 - MPMX19_04510 0.22 +0.4 879,560 + MPMX19_04510 0.27 -0.7 879,560 + MPMX19_04510 0.27 +2.0 879,560 + MPMX19_04510 0.27 -0.9 879,560 + MPMX19_04510 0.27 -0.5 879,561 - MPMX19_04510 0.27 -2.3 879,561 - MPMX19_04510 0.27 +0.1 879,561 - MPMX19_04510 0.27 +0.0 879,575 + MPMX19_04510 0.28 +0.6 879,576 - MPMX19_04510 0.28 +0.9 879,576 - MPMX19_04510 0.28 -1.3 879,626 + MPMX19_04510 0.31 +0.6 879,626 + MPMX19_04510 0.31 -0.6 879,626 + MPMX19_04510 0.31 -1.4 879,626 + MPMX19_04510 0.31 -0.1 879,626 + MPMX19_04510 0.31 -0.6 879,626 + MPMX19_04510 0.31 -0.6 879,626 + MPMX19_04510 0.31 +0.1 879,626 + MPMX19_04510 0.31 -0.0 879,626 + MPMX19_04510 0.31 +0.5 879,626 + MPMX19_04510 0.31 +0.2 879,626 + MPMX19_04510 0.31 -0.5 879,626 + MPMX19_04510 0.31 -0.8 879,626 + MPMX19_04510 0.31 +0.1 879,627 - MPMX19_04510 0.31 -1.4 879,627 - MPMX19_04510 0.31 +1.0 879,627 - MPMX19_04510 0.31 -1.7 879,627 - MPMX19_04510 0.31 -2.5 879,627 - MPMX19_04510 0.31 -0.1 879,627 - MPMX19_04510 0.31 +0.0 879,627 - MPMX19_04510 0.31 -1.0 879,627 - MPMX19_04510 0.31 -0.3 879,671 + MPMX19_04510 0.33 -0.1 879,672 - MPMX19_04510 0.33 -1.7 879,672 - MPMX19_04510 0.33 -0.3 879,722 + MPMX19_04510 0.36 -2.5 879,722 + MPMX19_04510 0.36 +0.8 879,722 + MPMX19_04510 0.36 -0.5 879,722 + MPMX19_04510 0.36 -1.3 879,723 - MPMX19_04510 0.36 -0.4 879,723 - MPMX19_04510 0.36 +0.2 879,723 - MPMX19_04510 0.36 -0.1 879,723 - MPMX19_04510 0.36 -0.8 879,743 + MPMX19_04510 0.38 -0.4 879,743 + MPMX19_04510 0.38 +0.2 879,743 + MPMX19_04510 0.38 -0.2 879,743 + MPMX19_04510 0.38 -0.9 879,743 + MPMX19_04510 0.38 -1.0 879,743 + MPMX19_04510 0.38 +2.4 879,743 + MPMX19_04510 0.38 -0.8 879,743 + MPMX19_04510 0.38 -1.0 879,743 + MPMX19_04510 0.38 +0.2 879,744 - MPMX19_04510 0.38 -1.1 879,744 - MPMX19_04510 0.38 -0.6 879,744 - MPMX19_04510 0.38 +0.0 879,744 - MPMX19_04510 0.38 -0.4 879,744 - MPMX19_04510 0.38 +0.7 879,744 - MPMX19_04510 0.38 -0.6 879,744 - MPMX19_04510 0.38 -0.7 879,744 - MPMX19_04510 0.38 -1.3 879,744 - MPMX19_04510 0.38 +0.1 879,744 - MPMX19_04510 0.38 +1.0 879,744 - MPMX19_04510 0.38 -1.8 879,744 - MPMX19_04510 0.38 -1.1 879,744 - MPMX19_04510 0.38 -1.3 879,773 + MPMX19_04510 0.39 +0.4 879,773 + MPMX19_04510 0.39 -0.6 879,774 - MPMX19_04510 0.39 +0.4 879,774 - MPMX19_04510 0.39 +0.3 879,894 - MPMX19_04510 0.46 +0.1 879,965 + MPMX19_04510 0.50 -0.1 879,965 + MPMX19_04510 0.50 -2.1 879,965 + MPMX19_04510 0.50 +1.2 879,965 + MPMX19_04510 0.50 -0.9 879,965 + MPMX19_04510 0.50 +0.6 879,965 + MPMX19_04510 0.50 -1.3 879,965 + MPMX19_04510 0.50 -0.4 879,965 + MPMX19_04510 0.50 -2.1 879,965 + MPMX19_04510 0.50 -1.8 879,966 - MPMX19_04510 0.51 -0.6 879,966 - MPMX19_04510 0.51 +0.4 880,043 + MPMX19_04510 0.55 -0.7 880,043 + MPMX19_04510 0.55 +1.1 880,043 + MPMX19_04510 0.55 -0.3 880,043 + MPMX19_04510 0.55 +0.3 880,043 + MPMX19_04510 0.55 -0.7 880,043 + MPMX19_04510 0.55 -0.6 880,043 + MPMX19_04510 0.55 +0.1 880,044 - MPMX19_04510 0.55 -0.1 880,044 - MPMX19_04510 0.55 -0.4 880,044 - MPMX19_04510 0.55 -1.3 880,044 - MPMX19_04510 0.55 +0.3 880,044 - MPMX19_04510 0.55 +0.2 880,044 - MPMX19_04510 0.55 -0.4 880,044 - MPMX19_04510 0.55 -0.7 880,085 + MPMX19_04510 0.58 -1.3 880,085 + MPMX19_04510 0.58 -0.1 880,085 + MPMX19_04510 0.58 +0.8 880,085 + MPMX19_04510 0.58 +0.4 880,085 + MPMX19_04510 0.58 -1.0
Or see this region's nucleotide sequence