Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04506 and MPMX19_04507 are separated by 299 nucleotides MPMX19_04507 and MPMX19_04508 overlap by 7 nucleotides MPMX19_04508 and MPMX19_04509 are separated by 12 nucleotides
MPMX19_04506: MPMX19_04506 - Aliphatic amidase expression-regulating protein, at 875,275 to 876,444
_04506
MPMX19_04507: MPMX19_04507 - Putative phosphoserine phosphatase 2, at 876,744 to 877,271
_04507
MPMX19_04508: MPMX19_04508 - Phosphoglycolate phosphatase, at 877,265 to 877,957
_04508
MPMX19_04509: MPMX19_04509 - Spermidine/putrescine import ATP-binding protein PotA, at 877,970 to 879,085
_04509
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.786 kb on + strand, within MPMX19_04506 at 875.787 kb on - strand, within MPMX19_04506 at 875.787 kb on - strand, within MPMX19_04506 at 875.787 kb on - strand, within MPMX19_04506 at 875.787 kb on - strand, within MPMX19_04506 at 875.795 kb on + strand, within MPMX19_04506 at 875.796 kb on - strand, within MPMX19_04506 at 875.796 kb on - strand, within MPMX19_04506 at 875.909 kb on + strand, within MPMX19_04506 at 875.909 kb on + strand, within MPMX19_04506 at 875.910 kb on - strand, within MPMX19_04506 at 875.910 kb on - strand, within MPMX19_04506 at 875.910 kb on - strand, within MPMX19_04506 at 875.975 kb on + strand, within MPMX19_04506 at 875.975 kb on + strand, within MPMX19_04506 at 875.976 kb on - strand, within MPMX19_04506 at 875.976 kb on - strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.981 kb on + strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.982 kb on - strand, within MPMX19_04506 at 875.987 kb on + strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 875.988 kb on - strand, within MPMX19_04506 at 876.005 kb on + strand, within MPMX19_04506 at 876.005 kb on + strand, within MPMX19_04506 at 876.006 kb on - strand, within MPMX19_04506 at 876.006 kb on - strand, within MPMX19_04506 at 876.006 kb on - strand, within MPMX19_04506 at 876.006 kb on - strand, within MPMX19_04506 at 876.006 kb on - strand, within MPMX19_04506 at 876.021 kb on - strand, within MPMX19_04506 at 876.021 kb on - strand, within MPMX19_04506 at 876.035 kb on + strand, within MPMX19_04506 at 876.035 kb on + strand, within MPMX19_04506 at 876.036 kb on - strand, within MPMX19_04506 at 876.036 kb on - strand, within MPMX19_04506 at 876.080 kb on + strand, within MPMX19_04506 at 876.080 kb on + strand, within MPMX19_04506 at 876.080 kb on + strand, within MPMX19_04506 at 876.080 kb on + strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.081 kb on - strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.084 kb on + strand, within MPMX19_04506 at 876.085 kb on - strand, within MPMX19_04506 at 876.085 kb on - strand, within MPMX19_04506 at 876.113 kb on + strand, within MPMX19_04506 at 876.113 kb on + strand, within MPMX19_04506 at 876.113 kb on + strand, within MPMX19_04506 at 876.113 kb on + strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.114 kb on - strand, within MPMX19_04506 at 876.126 kb on - strand, within MPMX19_04506 at 876.126 kb on - strand, within MPMX19_04506 at 876.126 kb on - strand, within MPMX19_04506 at 876.126 kb on - strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.188 kb on + strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.189 kb on - strand, within MPMX19_04506 at 876.435 kb on + strand at 876.436 kb on - strand at 876.436 kb on - strand at 876.477 kb on + strand at 876.543 kb on - strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.668 kb on + strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.669 kb on - strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.680 kb on + strand at 876.681 kb on - strand at 876.681 kb on - strand at 876.683 kb on + strand at 876.683 kb on + strand at 876.684 kb on - strand at 876.684 kb on - strand at 876.684 kb on - strand at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.347 kb on + strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.348 kb on - strand, within MPMX19_04508 at 877.503 kb on + strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.504 kb on - strand, within MPMX19_04508 at 877.653 kb on + strand, within MPMX19_04508 at 877.654 kb on - strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.686 kb on + strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.687 kb on - strand, within MPMX19_04508 at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.971 kb on + strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 877.972 kb on - strand at 878.100 kb on + strand, within MPMX19_04509 at 878.101 kb on - strand, within MPMX19_04509
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 875,786 + MPMX19_04506 0.44 +0.6 875,787 - MPMX19_04506 0.44 -0.2 875,787 - MPMX19_04506 0.44 +0.6 875,787 - MPMX19_04506 0.44 -0.7 875,787 - MPMX19_04506 0.44 -1.0 875,795 + MPMX19_04506 0.44 +1.2 875,796 - MPMX19_04506 0.45 -1.0 875,796 - MPMX19_04506 0.45 +1.0 875,909 + MPMX19_04506 0.54 +0.2 875,909 + MPMX19_04506 0.54 -0.9 875,910 - MPMX19_04506 0.54 -0.5 875,910 - MPMX19_04506 0.54 -0.4 875,910 - MPMX19_04506 0.54 +0.2 875,975 + MPMX19_04506 0.60 -0.6 875,975 + MPMX19_04506 0.60 +0.3 875,976 - MPMX19_04506 0.60 +0.1 875,976 - MPMX19_04506 0.60 +1.3 875,981 + MPMX19_04506 0.60 +0.2 875,981 + MPMX19_04506 0.60 +0.6 875,981 + MPMX19_04506 0.60 +0.7 875,981 + MPMX19_04506 0.60 +0.3 875,981 + MPMX19_04506 0.60 -0.1 875,981 + MPMX19_04506 0.60 +0.6 875,981 + MPMX19_04506 0.60 +0.9 875,981 + MPMX19_04506 0.60 -2.1 875,981 + MPMX19_04506 0.60 -0.6 875,981 + MPMX19_04506 0.60 -1.3 875,981 + MPMX19_04506 0.60 -0.1 875,981 + MPMX19_04506 0.60 -1.6 875,981 + MPMX19_04506 0.60 +0.0 875,981 + MPMX19_04506 0.60 -0.8 875,981 + MPMX19_04506 0.60 +0.1 875,981 + MPMX19_04506 0.60 -1.3 875,981 + MPMX19_04506 0.60 -2.6 875,981 + MPMX19_04506 0.60 -0.6 875,981 + MPMX19_04506 0.60 +0.2 875,981 + MPMX19_04506 0.60 -0.1 875,981 + MPMX19_04506 0.60 +0.6 875,981 + MPMX19_04506 0.60 -0.5 875,981 + MPMX19_04506 0.60 +0.4 875,981 + MPMX19_04506 0.60 -0.1 875,981 + MPMX19_04506 0.60 -0.5 875,981 + MPMX19_04506 0.60 +0.6 875,981 + MPMX19_04506 0.60 -0.9 875,981 + MPMX19_04506 0.60 -0.3 875,982 - MPMX19_04506 0.60 -0.6 875,982 - MPMX19_04506 0.60 +1.2 875,982 - MPMX19_04506 0.60 +0.0 875,982 - MPMX19_04506 0.60 +0.9 875,982 - MPMX19_04506 0.60 -1.6 875,982 - MPMX19_04506 0.60 -0.6 875,982 - MPMX19_04506 0.60 -0.2 875,982 - MPMX19_04506 0.60 +0.8 875,982 - MPMX19_04506 0.60 +0.4 875,982 - MPMX19_04506 0.60 -1.0 875,982 - MPMX19_04506 0.60 -1.2 875,982 - MPMX19_04506 0.60 -0.6 875,982 - MPMX19_04506 0.60 -0.7 875,982 - MPMX19_04506 0.60 +1.0 875,982 - MPMX19_04506 0.60 +0.2 875,982 - MPMX19_04506 0.60 +0.1 875,982 - MPMX19_04506 0.60 -0.2 875,982 - MPMX19_04506 0.60 +0.5 875,982 - MPMX19_04506 0.60 -1.8 875,982 - MPMX19_04506 0.60 +0.4 875,982 - MPMX19_04506 0.60 -0.6 875,982 - MPMX19_04506 0.60 +0.2 875,982 - MPMX19_04506 0.60 +1.0 875,982 - MPMX19_04506 0.60 +1.2 875,982 - MPMX19_04506 0.60 +0.4 875,987 + MPMX19_04506 0.61 -0.1 875,988 - MPMX19_04506 0.61 -0.7 875,988 - MPMX19_04506 0.61 +0.6 875,988 - MPMX19_04506 0.61 +1.0 875,988 - MPMX19_04506 0.61 -0.9 875,988 - MPMX19_04506 0.61 -0.1 875,988 - MPMX19_04506 0.61 -1.1 875,988 - MPMX19_04506 0.61 +0.8 875,988 - MPMX19_04506 0.61 -1.2 876,005 + MPMX19_04506 0.62 -1.6 876,005 + MPMX19_04506 0.62 +0.2 876,006 - MPMX19_04506 0.62 +0.5 876,006 - MPMX19_04506 0.62 -0.3 876,006 - MPMX19_04506 0.62 -0.1 876,006 - MPMX19_04506 0.62 -0.8 876,006 - MPMX19_04506 0.62 -0.5 876,021 - MPMX19_04506 0.64 -0.5 876,021 - MPMX19_04506 0.64 -1.0 876,035 + MPMX19_04506 0.65 -0.2 876,035 + MPMX19_04506 0.65 +0.2 876,036 - MPMX19_04506 0.65 +0.1 876,036 - MPMX19_04506 0.65 -1.0 876,080 + MPMX19_04506 0.69 -1.8 876,080 + MPMX19_04506 0.69 +0.3 876,080 + MPMX19_04506 0.69 -1.0 876,080 + MPMX19_04506 0.69 -1.6 876,081 - MPMX19_04506 0.69 -0.7 876,081 - MPMX19_04506 0.69 -1.1 876,081 - MPMX19_04506 0.69 +1.2 876,081 - MPMX19_04506 0.69 -0.7 876,081 - MPMX19_04506 0.69 -0.4 876,081 - MPMX19_04506 0.69 -1.2 876,081 - MPMX19_04506 0.69 -1.3 876,081 - MPMX19_04506 0.69 -0.6 876,081 - MPMX19_04506 0.69 +0.1 876,081 - MPMX19_04506 0.69 -0.3 876,081 - MPMX19_04506 0.69 +0.6 876,084 + MPMX19_04506 0.69 +0.0 876,084 + MPMX19_04506 0.69 -0.4 876,084 + MPMX19_04506 0.69 +1.0 876,084 + MPMX19_04506 0.69 +0.4 876,084 + MPMX19_04506 0.69 -0.8 876,084 + MPMX19_04506 0.69 -1.5 876,084 + MPMX19_04506 0.69 +0.7 876,084 + MPMX19_04506 0.69 -0.8 876,084 + MPMX19_04506 0.69 -0.3 876,085 - MPMX19_04506 0.69 -0.1 876,085 - MPMX19_04506 0.69 +0.2 876,113 + MPMX19_04506 0.72 +0.3 876,113 + MPMX19_04506 0.72 -0.4 876,113 + MPMX19_04506 0.72 -1.4 876,113 + MPMX19_04506 0.72 +0.0 876,114 - MPMX19_04506 0.72 +0.6 876,114 - MPMX19_04506 0.72 +0.2 876,114 - MPMX19_04506 0.72 +0.7 876,114 - MPMX19_04506 0.72 -0.5 876,114 - MPMX19_04506 0.72 +0.1 876,114 - MPMX19_04506 0.72 +0.1 876,114 - MPMX19_04506 0.72 -1.3 876,114 - MPMX19_04506 0.72 -1.0 876,114 - MPMX19_04506 0.72 +1.0 876,114 - MPMX19_04506 0.72 +0.9 876,126 - MPMX19_04506 0.73 -0.1 876,126 - MPMX19_04506 0.73 +1.2 876,126 - MPMX19_04506 0.73 -0.4 876,126 - MPMX19_04506 0.73 -0.0 876,188 + MPMX19_04506 0.78 -0.2 876,188 + MPMX19_04506 0.78 +0.8 876,188 + MPMX19_04506 0.78 +1.2 876,188 + MPMX19_04506 0.78 -0.1 876,188 + MPMX19_04506 0.78 -0.1 876,188 + MPMX19_04506 0.78 -1.8 876,188 + MPMX19_04506 0.78 -1.1 876,189 - MPMX19_04506 0.78 -0.7 876,189 - MPMX19_04506 0.78 -0.1 876,189 - MPMX19_04506 0.78 -1.0 876,189 - MPMX19_04506 0.78 -1.7 876,189 - MPMX19_04506 0.78 -0.2 876,189 - MPMX19_04506 0.78 +0.2 876,189 - MPMX19_04506 0.78 +0.3 876,189 - MPMX19_04506 0.78 +0.0 876,189 - MPMX19_04506 0.78 -0.1 876,189 - MPMX19_04506 0.78 -0.1 876,189 - MPMX19_04506 0.78 -1.6 876,435 + -0.9 876,436 - -0.7 876,436 - -1.4 876,477 + -1.1 876,543 - -0.2 876,668 + +0.2 876,668 + -0.3 876,668 + -1.5 876,668 + -0.4 876,668 + -1.9 876,668 + -0.9 876,668 + -1.2 876,668 + -0.7 876,669 - -1.7 876,669 - -1.3 876,669 - -0.1 876,669 - -0.8 876,669 - +0.4 876,669 - +0.2 876,669 - +0.5 876,669 - -2.0 876,669 - -0.1 876,680 + -0.8 876,680 + -1.3 876,680 + -0.3 876,680 + +2.0 876,681 - -0.3 876,681 - -0.5 876,683 + -0.3 876,683 + +0.4 876,684 - -0.6 876,684 - -1.0 876,684 - +0.3 877,347 + MPMX19_04508 0.12 +0.3 877,347 + MPMX19_04508 0.12 +1.4 877,347 + MPMX19_04508 0.12 -0.5 877,347 + MPMX19_04508 0.12 -1.6 877,348 - MPMX19_04508 0.12 -0.6 877,348 - MPMX19_04508 0.12 -0.5 877,348 - MPMX19_04508 0.12 -0.8 877,348 - MPMX19_04508 0.12 -0.9 877,503 + MPMX19_04508 0.34 +1.6 877,504 - MPMX19_04508 0.34 -0.6 877,504 - MPMX19_04508 0.34 -1.7 877,653 + MPMX19_04508 0.56 -0.3 877,654 - MPMX19_04508 0.56 +0.2 877,686 + MPMX19_04508 0.61 -1.1 877,686 + MPMX19_04508 0.61 +0.8 877,687 - MPMX19_04508 0.61 -0.4 877,687 - MPMX19_04508 0.61 -1.7 877,687 - MPMX19_04508 0.61 -0.7 877,971 + -0.6 877,971 + -0.4 877,971 + +1.0 877,971 + +0.6 877,971 + -1.0 877,971 + -0.8 877,972 - -1.6 877,972 - +0.6 877,972 - +0.2 877,972 - +0.3 877,972 - +0.0 878,100 + MPMX19_04509 0.12 +0.2 878,101 - MPMX19_04509 0.12 -0.8
Or see this region's nucleotide sequence