Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04499 and MPMX19_04500 are separated by 116 nucleotides MPMX19_04500 and MPMX19_04501 overlap by 8 nucleotides MPMX19_04501 and MPMX19_04502 are separated by 14 nucleotides
MPMX19_04499: MPMX19_04499 - Aliphatic amidase, at 868,035 to 869,075
_04499
MPMX19_04500: MPMX19_04500 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 869,192 to 869,887
_04500
MPMX19_04501: MPMX19_04501 - Lipopolysaccharide export system ATP-binding protein LptB, at 869,880 to 870,629
_04501
MPMX19_04502: MPMX19_04502 - hypothetical protein, at 870,644 to 871,783
_04502
Position (kb)
869
870
871 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.017 kb on + strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.018 kb on - strand at 869.060 kb on + strand at 869.061 kb on - strand at 869.193 kb on + strand at 869.193 kb on + strand at 869.193 kb on + strand at 869.343 kb on + strand, within MPMX19_04500 at 869.343 kb on + strand, within MPMX19_04500 at 869.526 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.649 kb on + strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.650 kb on - strand, within MPMX19_04500 at 869.856 kb on + strand at 869.857 kb on - strand at 869.857 kb on - strand at 869.857 kb on - strand at 869.857 kb on - strand at 869.865 kb on + strand at 869.865 kb on + strand at 869.865 kb on + strand at 869.865 kb on + strand at 869.866 kb on - strand at 869.866 kb on - strand at 869.911 kb on + strand at 869.911 kb on + strand at 869.911 kb on + strand at 869.911 kb on + strand at 869.911 kb on + strand at 869.912 kb on - strand at 869.912 kb on - strand at 869.912 kb on - strand at 869.912 kb on - strand at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.428 kb on + strand, within MPMX19_04501 at 870.429 kb on - strand, within MPMX19_04501 at 870.429 kb on - strand, within MPMX19_04501 at 870.429 kb on - strand, within MPMX19_04501 at 870.429 kb on - strand, within MPMX19_04501 at 870.622 kb on + strand at 870.622 kb on + strand at 870.622 kb on + strand at 870.623 kb on - strand at 870.623 kb on - strand at 870.623 kb on - strand at 870.990 kb on + strand, within MPMX19_04502 at 870.990 kb on + strand, within MPMX19_04502 at 870.990 kb on + strand, within MPMX19_04502 at 870.990 kb on + strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 870.991 kb on - strand, within MPMX19_04502 at 871.063 kb on - strand, within MPMX19_04502 at 871.182 kb on + strand, within MPMX19_04502 at 871.182 kb on + strand, within MPMX19_04502 at 871.182 kb on + strand, within MPMX19_04502 at 871.182 kb on + strand, within MPMX19_04502 at 871.183 kb on - strand, within MPMX19_04502 at 871.183 kb on - strand, within MPMX19_04502 at 871.183 kb on - strand, within MPMX19_04502 at 871.183 kb on - strand, within MPMX19_04502 at 871.183 kb on - strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.185 kb on + strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.186 kb on - strand, within MPMX19_04502 at 871.200 kb on + strand, within MPMX19_04502 at 871.200 kb on + strand, within MPMX19_04502 at 871.201 kb on - strand, within MPMX19_04502 at 871.269 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.335 kb on + strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.336 kb on - strand, within MPMX19_04502 at 871.554 kb on + strand, within MPMX19_04502 at 871.554 kb on + strand, within MPMX19_04502 at 871.554 kb on + strand, within MPMX19_04502 at 871.555 kb on - strand, within MPMX19_04502 at 871.555 kb on - strand, within MPMX19_04502 at 871.605 kb on + strand, within MPMX19_04502 at 871.605 kb on + strand, within MPMX19_04502 at 871.606 kb on - strand, within MPMX19_04502 at 871.606 kb on - strand, within MPMX19_04502
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 869,017 + -0.8 869,017 + +0.6 869,017 + -1.3 869,017 + +2.2 869,017 + +0.4 869,017 + -0.1 869,017 + -0.8 869,017 + +0.4 869,017 + -2.0 869,018 - +0.2 869,018 - -1.1 869,018 - -2.8 869,018 - -0.2 869,018 - -2.4 869,018 - -0.2 869,018 - -0.1 869,018 - -0.8 869,060 + -0.1 869,061 - -0.8 869,193 + -1.0 869,193 + +0.3 869,193 + +1.2 869,343 + MPMX19_04500 0.22 +0.6 869,343 + MPMX19_04500 0.22 -0.4 869,526 + MPMX19_04500 0.48 -0.4 869,649 + MPMX19_04500 0.66 -0.4 869,649 + MPMX19_04500 0.66 -1.9 869,649 + MPMX19_04500 0.66 -0.4 869,649 + MPMX19_04500 0.66 +0.0 869,649 + MPMX19_04500 0.66 +0.4 869,649 + MPMX19_04500 0.66 -1.0 869,649 + MPMX19_04500 0.66 -1.3 869,649 + MPMX19_04500 0.66 -0.4 869,650 - MPMX19_04500 0.66 -0.6 869,650 - MPMX19_04500 0.66 -0.8 869,650 - MPMX19_04500 0.66 -1.1 869,650 - MPMX19_04500 0.66 +0.9 869,650 - MPMX19_04500 0.66 -1.8 869,650 - MPMX19_04500 0.66 -0.1 869,650 - MPMX19_04500 0.66 +0.2 869,650 - MPMX19_04500 0.66 -1.2 869,650 - MPMX19_04500 0.66 +0.2 869,856 + +1.4 869,857 - -0.6 869,857 - +0.1 869,857 - -2.8 869,857 - +1.6 869,865 + -1.0 869,865 + +1.0 869,865 + -0.5 869,865 + +0.0 869,866 - -1.0 869,866 - -2.0 869,911 + +0.8 869,911 + +0.0 869,911 + +0.2 869,911 + +0.9 869,911 + +0.5 869,912 - -0.9 869,912 - -0.3 869,912 - -0.4 869,912 - -1.5 870,428 + MPMX19_04501 0.73 +0.8 870,428 + MPMX19_04501 0.73 -1.4 870,428 + MPMX19_04501 0.73 -0.8 870,428 + MPMX19_04501 0.73 +0.3 870,428 + MPMX19_04501 0.73 +1.6 870,428 + MPMX19_04501 0.73 +1.6 870,428 + MPMX19_04501 0.73 +1.0 870,428 + MPMX19_04501 0.73 -0.5 870,429 - MPMX19_04501 0.73 -0.7 870,429 - MPMX19_04501 0.73 +0.6 870,429 - MPMX19_04501 0.73 -0.2 870,429 - MPMX19_04501 0.73 -1.4 870,622 + +0.4 870,622 + -1.2 870,622 + -1.3 870,623 - -1.2 870,623 - -1.4 870,623 - +1.7 870,990 + MPMX19_04502 0.30 -0.3 870,990 + MPMX19_04502 0.30 -0.7 870,990 + MPMX19_04502 0.30 -1.1 870,990 + MPMX19_04502 0.30 -1.1 870,991 - MPMX19_04502 0.30 -0.7 870,991 - MPMX19_04502 0.30 +1.0 870,991 - MPMX19_04502 0.30 -0.4 870,991 - MPMX19_04502 0.30 -2.1 870,991 - MPMX19_04502 0.30 -1.7 870,991 - MPMX19_04502 0.30 +0.0 870,991 - MPMX19_04502 0.30 +0.6 870,991 - MPMX19_04502 0.30 -1.0 871,063 - MPMX19_04502 0.37 -1.1 871,182 + MPMX19_04502 0.47 +0.0 871,182 + MPMX19_04502 0.47 -0.8 871,182 + MPMX19_04502 0.47 +0.0 871,182 + MPMX19_04502 0.47 -0.1 871,183 - MPMX19_04502 0.47 +0.0 871,183 - MPMX19_04502 0.47 -0.3 871,183 - MPMX19_04502 0.47 +1.6 871,183 - MPMX19_04502 0.47 -0.1 871,183 - MPMX19_04502 0.47 +1.8 871,185 + MPMX19_04502 0.47 +0.0 871,185 + MPMX19_04502 0.47 +0.7 871,185 + MPMX19_04502 0.47 -0.3 871,185 + MPMX19_04502 0.47 +0.4 871,185 + MPMX19_04502 0.47 -1.0 871,185 + MPMX19_04502 0.47 +1.2 871,185 + MPMX19_04502 0.47 -1.8 871,185 + MPMX19_04502 0.47 -0.0 871,185 + MPMX19_04502 0.47 +0.2 871,185 + MPMX19_04502 0.47 +0.2 871,185 + MPMX19_04502 0.47 +0.0 871,185 + MPMX19_04502 0.47 -1.3 871,185 + MPMX19_04502 0.47 -0.7 871,185 + MPMX19_04502 0.47 -1.3 871,185 + MPMX19_04502 0.47 -0.7 871,185 + MPMX19_04502 0.47 -0.4 871,185 + MPMX19_04502 0.47 +0.1 871,185 + MPMX19_04502 0.47 +0.0 871,185 + MPMX19_04502 0.47 -0.6 871,185 + MPMX19_04502 0.47 -0.0 871,185 + MPMX19_04502 0.47 +0.2 871,185 + MPMX19_04502 0.47 +0.3 871,186 - MPMX19_04502 0.48 -0.5 871,186 - MPMX19_04502 0.48 -1.6 871,186 - MPMX19_04502 0.48 -0.4 871,186 - MPMX19_04502 0.48 -0.4 871,186 - MPMX19_04502 0.48 -0.8 871,186 - MPMX19_04502 0.48 -0.1 871,186 - MPMX19_04502 0.48 +0.4 871,186 - MPMX19_04502 0.48 +0.5 871,186 - MPMX19_04502 0.48 -2.2 871,186 - MPMX19_04502 0.48 -0.1 871,186 - MPMX19_04502 0.48 +0.5 871,186 - MPMX19_04502 0.48 -0.4 871,186 - MPMX19_04502 0.48 -1.7 871,186 - MPMX19_04502 0.48 +0.4 871,186 - MPMX19_04502 0.48 -3.0 871,200 + MPMX19_04502 0.49 -0.0 871,200 + MPMX19_04502 0.49 -2.3 871,201 - MPMX19_04502 0.49 +0.5 871,269 + MPMX19_04502 0.55 -0.1 871,335 + MPMX19_04502 0.61 +0.4 871,335 + MPMX19_04502 0.61 -0.2 871,335 + MPMX19_04502 0.61 -0.1 871,335 + MPMX19_04502 0.61 -1.3 871,335 + MPMX19_04502 0.61 -0.1 871,335 + MPMX19_04502 0.61 -0.9 871,335 + MPMX19_04502 0.61 -0.1 871,336 - MPMX19_04502 0.61 -0.5 871,336 - MPMX19_04502 0.61 -0.5 871,336 - MPMX19_04502 0.61 +1.2 871,336 - MPMX19_04502 0.61 -1.0 871,336 - MPMX19_04502 0.61 +0.5 871,336 - MPMX19_04502 0.61 -0.2 871,336 - MPMX19_04502 0.61 +0.2 871,336 - MPMX19_04502 0.61 -1.1 871,336 - MPMX19_04502 0.61 -0.4 871,336 - MPMX19_04502 0.61 -0.5 871,336 - MPMX19_04502 0.61 +0.2 871,336 - MPMX19_04502 0.61 +0.2 871,336 - MPMX19_04502 0.61 +1.2 871,336 - MPMX19_04502 0.61 -1.4 871,336 - MPMX19_04502 0.61 -0.2 871,336 - MPMX19_04502 0.61 -1.5 871,336 - MPMX19_04502 0.61 +0.2 871,336 - MPMX19_04502 0.61 -0.3 871,554 + MPMX19_04502 0.80 -0.9 871,554 + MPMX19_04502 0.80 -0.5 871,554 + MPMX19_04502 0.80 +2.5 871,555 - MPMX19_04502 0.80 -2.1 871,555 - MPMX19_04502 0.80 +0.3 871,605 + MPMX19_04502 0.84 -2.0 871,605 + MPMX19_04502 0.84 +0.9 871,606 - MPMX19_04502 0.84 -1.1 871,606 - MPMX19_04502 0.84 -1.6
Or see this region's nucleotide sequence