Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04500

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04499 and MPMX19_04500 are separated by 116 nucleotidesMPMX19_04500 and MPMX19_04501 overlap by 8 nucleotidesMPMX19_04501 and MPMX19_04502 are separated by 14 nucleotides MPMX19_04499: MPMX19_04499 - Aliphatic amidase, at 868,035 to 869,075 _04499 MPMX19_04500: MPMX19_04500 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 869,192 to 869,887 _04500 MPMX19_04501: MPMX19_04501 - Lipopolysaccharide export system ATP-binding protein LptB, at 869,880 to 870,629 _04501 MPMX19_04502: MPMX19_04502 - hypothetical protein, at 870,644 to 871,783 _04502 Position (kb) 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 868.225 kb on + strand, within MPMX19_04499at 868.226 kb on - strand, within MPMX19_04499at 868.226 kb on - strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.565 kb on - strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.858 kb on + strand, within MPMX19_04499at 868.859 kb on - strand, within MPMX19_04499at 868.876 kb on + strand, within MPMX19_04499at 868.876 kb on + strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.017 kb on + strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.018 kb on - strandat 869.060 kb on + strandat 869.061 kb on - strandat 869.193 kb on + strandat 869.193 kb on + strandat 869.193 kb on + strandat 869.343 kb on + strand, within MPMX19_04500at 869.343 kb on + strand, within MPMX19_04500at 869.526 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.856 kb on + strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.866 kb on - strandat 869.866 kb on - strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.912 kb on - strandat 869.912 kb on - strandat 869.912 kb on - strandat 869.912 kb on - strandat 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.622 kb on + strandat 870.622 kb on + strandat 870.622 kb on + strandat 870.623 kb on - strandat 870.623 kb on - strandat 870.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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868,225 + MPMX19_04499 0.18 -1.9
868,226 - MPMX19_04499 0.18 +0.2
868,226 - MPMX19_04499 0.18 -0.6
868,312 + MPMX19_04499 0.27 +0.9
868,312 + MPMX19_04499 0.27 -1.1
868,312 + MPMX19_04499 0.27 -1.4
868,312 + MPMX19_04499 0.27 -2.1
868,313 - MPMX19_04499 0.27 +0.7
868,313 - MPMX19_04499 0.27 +0.8
868,313 - MPMX19_04499 0.27 -1.5
868,390 + MPMX19_04499 0.34 +0.6
868,390 + MPMX19_04499 0.34 +0.2
868,390 + MPMX19_04499 0.34 +0.0
868,390 + MPMX19_04499 0.34 -1.6
868,391 - MPMX19_04499 0.34 -0.4
868,391 - MPMX19_04499 0.34 -1.0
868,391 - MPMX19_04499 0.34 +0.2
868,391 - MPMX19_04499 0.34 -2.1
868,391 - MPMX19_04499 0.34 -0.7
868,396 + MPMX19_04499 0.35 +0.6
868,396 + MPMX19_04499 0.35 -0.9
868,396 + MPMX19_04499 0.35 -1.8
868,396 + MPMX19_04499 0.35 +0.2
868,396 + MPMX19_04499 0.35 +1.9
868,397 - MPMX19_04499 0.35 -0.8
868,397 - MPMX19_04499 0.35 -0.8
868,397 - MPMX19_04499 0.35 -0.6
868,397 - MPMX19_04499 0.35 -0.8
868,397 - MPMX19_04499 0.35 -0.8
868,397 - MPMX19_04499 0.35 -0.7
868,397 - MPMX19_04499 0.35 +0.9
868,435 + MPMX19_04499 0.38 -1.0
868,435 + MPMX19_04499 0.38 +0.1
868,435 + MPMX19_04499 0.38 +0.6
868,435 + MPMX19_04499 0.38 +0.1
868,435 + MPMX19_04499 0.38 -1.3
868,436 - MPMX19_04499 0.39 +0.5
868,436 - MPMX19_04499 0.39 -0.8
868,436 - MPMX19_04499 0.39 +1.0
868,436 - MPMX19_04499 0.39 -0.4
868,436 - MPMX19_04499 0.39 -0.6
868,436 - MPMX19_04499 0.39 -0.1
868,436 - MPMX19_04499 0.39 -0.1
868,436 - MPMX19_04499 0.39 -1.3
868,436 - MPMX19_04499 0.39 -1.6
868,436 - MPMX19_04499 0.39 -0.4
868,436 - MPMX19_04499 0.39 +1.2
868,495 + MPMX19_04499 0.44 +0.1
868,495 + MPMX19_04499 0.44 -0.6
868,495 + MPMX19_04499 0.44 +0.6
868,495 + MPMX19_04499 0.44 -0.4
868,495 + MPMX19_04499 0.44 +1.6
868,495 + MPMX19_04499 0.44 -0.8
868,495 + MPMX19_04499 0.44 +0.8
868,495 + MPMX19_04499 0.44 -0.6
868,495 + MPMX19_04499 0.44 -0.0
868,496 - MPMX19_04499 0.44 +0.6
868,496 - MPMX19_04499 0.44 -1.0
868,496 - MPMX19_04499 0.44 -0.2
868,496 - MPMX19_04499 0.44 -0.5
868,496 - MPMX19_04499 0.44 +1.5
868,501 + MPMX19_04499 0.45 -0.6
868,501 + MPMX19_04499 0.45 -0.5
868,501 + MPMX19_04499 0.45 -0.4
868,501 + MPMX19_04499 0.45 +0.2
868,501 + MPMX19_04499 0.45 -1.1
868,501 + MPMX19_04499 0.45 -0.1
868,501 + MPMX19_04499 0.45 +0.2
868,501 + MPMX19_04499 0.45 -0.1
868,501 + MPMX19_04499 0.45 -1.5
868,501 + MPMX19_04499 0.45 -0.0
868,501 + MPMX19_04499 0.45 +0.9
868,502 - MPMX19_04499 0.45 -1.6
868,502 - MPMX19_04499 0.45 -0.3
868,502 - MPMX19_04499 0.45 -1.1
868,502 - MPMX19_04499 0.45 +0.8
868,502 - MPMX19_04499 0.45 -0.8
868,502 - MPMX19_04499 0.45 -1.3
868,502 - MPMX19_04499 0.45 +0.6
868,502 - MPMX19_04499 0.45 -1.2
868,502 - MPMX19_04499 0.45 -0.1
868,502 - MPMX19_04499 0.45 -1.1
868,564 + MPMX19_04499 0.51 +0.2
868,564 + MPMX19_04499 0.51 -1.3
868,564 + MPMX19_04499 0.51 -0.6
868,565 - MPMX19_04499 0.51 -0.1
868,729 + MPMX19_04499 0.67 -0.8
868,729 + MPMX19_04499 0.67 -2.0
868,729 + MPMX19_04499 0.67 -2.1
868,729 + MPMX19_04499 0.67 +0.9
868,729 + MPMX19_04499 0.67 -1.1
868,729 + MPMX19_04499 0.67 -0.2
868,729 + MPMX19_04499 0.67 -1.1
868,729 + MPMX19_04499 0.67 -0.4
868,730 - MPMX19_04499 0.67 +0.3
868,730 - MPMX19_04499 0.67 -0.8
868,730 - MPMX19_04499 0.67 -0.9
868,858 + MPMX19_04499 0.79 -0.0
868,859 - MPMX19_04499 0.79 -0.1
868,876 + MPMX19_04499 0.81 -0.9
868,876 + MPMX19_04499 0.81 +0.4
868,877 - MPMX19_04499 0.81 +1.0
868,877 - MPMX19_04499 0.81 +0.0
868,877 - MPMX19_04499 0.81 -0.9
868,877 - MPMX19_04499 0.81 -0.1
869,017 + -0.8
869,017 + +0.6
869,017 + -1.3
869,017 + +2.2
869,017 + +0.4
869,017 + -0.1
869,017 + -0.8
869,017 + +0.4
869,017 + -2.0
869,018 - +0.2
869,018 - -1.1
869,018 - -2.8
869,018 - -0.2
869,018 - -2.4
869,018 - -0.2
869,018 - -0.1
869,018 - -0.8
869,060 + -0.1
869,061 - -0.8
869,193 + -1.0
869,193 + +0.3
869,193 + +1.2
869,343 + MPMX19_04500 0.22 +0.6
869,343 + MPMX19_04500 0.22 -0.4
869,526 + MPMX19_04500 0.48 -0.4
869,649 + MPMX19_04500 0.66 -0.4
869,649 + MPMX19_04500 0.66 -1.9
869,649 + MPMX19_04500 0.66 -0.4
869,649 + MPMX19_04500 0.66 +0.0
869,649 + MPMX19_04500 0.66 +0.4
869,649 + MPMX19_04500 0.66 -1.0
869,649 + MPMX19_04500 0.66 -1.3
869,649 + MPMX19_04500 0.66 -0.4
869,650 - MPMX19_04500 0.66 -0.6
869,650 - MPMX19_04500 0.66 -0.8
869,650 - MPMX19_04500 0.66 -1.1
869,650 - MPMX19_04500 0.66 +0.9
869,650 - MPMX19_04500 0.66 -1.8
869,650 - MPMX19_04500 0.66 -0.1
869,650 - MPMX19_04500 0.66 +0.2
869,650 - MPMX19_04500 0.66 -1.2
869,650 - MPMX19_04500 0.66 +0.2
869,856 + +1.4
869,857 - -0.6
869,857 - +0.1
869,857 - -2.8
869,857 - +1.6
869,865 + -1.0
869,865 + +1.0
869,865 + -0.5
869,865 + +0.0
869,866 - -1.0
869,866 - -2.0
869,911 + +0.8
869,911 + +0.0
869,911 + +0.2
869,911 + +0.9
869,911 + +0.5
869,912 - -0.9
869,912 - -0.3
869,912 - -0.4
869,912 - -1.5
870,428 + MPMX19_04501 0.73 +0.8
870,428 + MPMX19_04501 0.73 -1.4
870,428 + MPMX19_04501 0.73 -0.8
870,428 + MPMX19_04501 0.73 +0.3
870,428 + MPMX19_04501 0.73 +1.6
870,428 + MPMX19_04501 0.73 +1.6
870,428 + MPMX19_04501 0.73 +1.0
870,428 + MPMX19_04501 0.73 -0.5
870,429 - MPMX19_04501 0.73 -0.7
870,429 - MPMX19_04501 0.73 +0.6
870,429 - MPMX19_04501 0.73 -0.2
870,429 - MPMX19_04501 0.73 -1.4
870,622 + +0.4
870,622 + -1.2
870,622 + -1.3
870,623 - -1.2
870,623 - -1.4
870,623 - +1.7

Or see this region's nucleotide sequence