Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04493

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04491 and MPMX19_04492 are separated by 233 nucleotidesMPMX19_04492 and MPMX19_04493 are separated by 215 nucleotidesMPMX19_04493 and MPMX19_04494 are separated by 245 nucleotides MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075 _04491 MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551 _04492 MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780 _04493 MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979 _04494 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 859.782 kb on + strand, within MPMX19_04491at 859.782 kb on + strand, within MPMX19_04491at 859.782 kb on + strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.198 kb on + strandat 860.198 kb on + strandat 860.198 kb on + strandat 860.199 kb on - strandat 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.528 kb on + strandat 860.528 kb on + strandat 860.529 kb on - strandat 860.529 kb on - strandat 860.529 kb on - strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.611 kb on - strandat 860.611 kb on - strandat 860.676 kb on + strandat 860.676 kb on + strandat 860.676 kb on + strandat 860.677 kb on - strandat 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.435 kb on - strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.637 kb on + strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.638 kb on - strand, within MPMX19_04493at 861.779 kb on - strandat 861.812 kb on + strandat 861.812 kb on + strandat 861.813 kb on - strandat 861.813 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.817 kb on - strandat 861.857 kb on + strandat 861.857 kb on + strandat 861.857 kb on + strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.858 kb on - strandat 861.912 kb on + strandat 861.913 kb on - strandat 861.913 kb on - strandat 861.913 kb on - strandat 861.926 kb on - strandat 861.926 kb on - strandat 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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859,782 + MPMX19_04491 0.88 +0.2
859,782 + MPMX19_04491 0.88 -0.6
859,782 + MPMX19_04491 0.88 +1.3
859,783 - MPMX19_04491 0.88 +0.1
859,783 - MPMX19_04491 0.88 -0.2
859,783 - MPMX19_04491 0.88 -0.8
859,783 - MPMX19_04491 0.88 -0.6
859,903 + -0.6
859,903 + -0.9
859,903 + -2.4
859,903 + -0.8
859,903 + -1.7
859,903 + -1.9
859,903 + +0.6
859,904 - -0.8
859,904 - -0.6
859,904 - +1.4
859,904 - -1.6
859,904 - -0.2
859,904 - -1.1
859,904 - -0.2
859,915 + -0.4
859,915 + -0.7
859,915 + -1.0
859,915 + +1.1
859,915 + -0.3
859,916 - -0.3
859,916 - -1.3
859,916 - -0.6
859,916 - -0.4
859,916 - -2.9
859,916 - -0.6
860,196 + -0.8
860,196 + -2.3
860,196 + -1.0
860,196 + -0.1
860,196 + -2.4
860,197 - -0.1
860,197 - -0.7
860,197 - -0.6
860,197 - +0.2
860,197 - -0.1
860,197 - -0.1
860,198 + -1.1
860,198 + -1.5
860,198 + +0.1
860,199 - -0.0
860,349 + MPMX19_04492 0.16 -0.5
860,349 + MPMX19_04492 0.16 -0.2
860,349 + MPMX19_04492 0.16 +1.8
860,349 + MPMX19_04492 0.16 -1.5
860,349 + MPMX19_04492 0.16 +0.6
860,350 - MPMX19_04492 0.17 +1.4
860,350 - MPMX19_04492 0.17 +0.2
860,350 - MPMX19_04492 0.17 -1.4
860,528 + -0.3
860,528 + -0.2
860,529 - -0.4
860,529 - +0.1
860,529 - -0.4
860,558 + +0.2
860,558 + -0.8
860,558 + +0.2
860,558 + +0.5
860,610 + -0.8
860,610 + +0.9
860,610 + +0.6
860,610 + -1.3
860,610 + -0.3
860,610 + +0.1
860,610 + -0.1
860,611 - +0.2
860,611 - -1.1
860,676 + -1.4
860,676 + +0.1
860,676 + -1.1
860,677 - -0.5
861,097 + MPMX19_04493 0.33 -1.3
861,097 + MPMX19_04493 0.33 +0.9
861,097 + MPMX19_04493 0.33 -1.3
861,097 + MPMX19_04493 0.33 -1.1
861,097 + MPMX19_04493 0.33 +0.2
861,098 - MPMX19_04493 0.33 -0.1
861,098 - MPMX19_04493 0.33 -0.9
861,098 - MPMX19_04493 0.33 -0.8
861,434 + MPMX19_04493 0.66 -1.0
861,434 + MPMX19_04493 0.66 -1.1
861,434 + MPMX19_04493 0.66 +0.2
861,435 - MPMX19_04493 0.66 -1.0
861,526 + MPMX19_04493 0.75 -0.9
861,526 + MPMX19_04493 0.75 +1.5
861,526 + MPMX19_04493 0.75 +0.6
861,526 + MPMX19_04493 0.75 +0.7
861,526 + MPMX19_04493 0.75 +0.2
861,527 - MPMX19_04493 0.75 +0.9
861,527 - MPMX19_04493 0.75 +0.2
861,527 - MPMX19_04493 0.75 +1.1
861,527 - MPMX19_04493 0.75 -0.5
861,527 - MPMX19_04493 0.75 -1.8
861,637 + MPMX19_04493 0.86 -0.4
861,637 + MPMX19_04493 0.86 -1.3
861,637 + MPMX19_04493 0.86 +0.7
861,637 + MPMX19_04493 0.86 -1.3
861,637 + MPMX19_04493 0.86 -0.7
861,638 - MPMX19_04493 0.86 +0.2
861,638 - MPMX19_04493 0.86 -1.1
861,638 - MPMX19_04493 0.86 +0.8
861,638 - MPMX19_04493 0.86 -0.1
861,638 - MPMX19_04493 0.86 -0.6
861,779 - -0.2
861,812 + +0.2
861,812 + +0.1
861,813 - +0.2
861,813 - -1.1
861,817 - +0.2
861,817 - -0.1
861,817 - -0.1
861,817 - -1.7
861,857 + -0.6
861,857 + -0.3
861,857 + -0.3
861,858 - -0.5
861,858 - +1.0
861,858 - -0.8
861,858 - +0.3
861,912 + -0.1
861,913 - -1.5
861,913 - -0.6
861,913 - -1.1
861,926 - -1.0
861,926 - -2.2
862,298 + MPMX19_04494 0.29 +1.2
862,298 + MPMX19_04494 0.29 -1.7
862,298 + MPMX19_04494 0.29 +0.1
862,298 + MPMX19_04494 0.29 +0.2
862,298 + MPMX19_04494 0.29 -0.1
862,298 + MPMX19_04494 0.29 -0.3
862,298 + MPMX19_04494 0.29 +0.4
862,298 + MPMX19_04494 0.29 -0.1
862,298 + MPMX19_04494 0.29 -1.1
862,299 - MPMX19_04494 0.29 -0.6
862,299 - MPMX19_04494 0.29 +1.4
862,368 + MPMX19_04494 0.36 -0.1
862,368 + MPMX19_04494 0.36 -1.4
862,368 + MPMX19_04494 0.36 +0.2
862,369 - MPMX19_04494 0.36 +0.4
862,369 - MPMX19_04494 0.36 -0.4
862,369 - MPMX19_04494 0.36 +0.6
862,369 - MPMX19_04494 0.36 +1.2
862,380 + MPMX19_04494 0.37 -1.0
862,380 + MPMX19_04494 0.37 +0.3
862,381 - MPMX19_04494 0.37 +0.1
862,381 - MPMX19_04494 0.37 +0.6
862,381 - MPMX19_04494 0.37 -0.6
862,381 - MPMX19_04494 0.37 -1.1
862,381 - MPMX19_04494 0.37 +1.6
862,381 - MPMX19_04494 0.37 +0.4

Or see this region's nucleotide sequence