Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04485 and MPMX19_04486 are separated by 80 nucleotides MPMX19_04486 and MPMX19_04487 overlap by 14 nucleotides MPMX19_04487 and MPMX19_04488 are separated by 14 nucleotides MPMX19_04488 and MPMX19_04489 are separated by 20 nucleotides
MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121
_04485
MPMX19_04486: MPMX19_04486 - Glutamine transport ATP-binding protein GlnQ, at 853,202 to 853,930
_04486
MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567
_04487
MPMX19_04488: MPMX19_04488 - putative glutamine ABC transporter permease protein GlnM, at 854,582 to 855,250
_04488
MPMX19_04489: MPMX19_04489 - D-threonine aldolase, at 855,271 to 856,557
_04489
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 853.527 kb on + strand, within MPMX19_04486 at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.903 kb on + strand at 853.903 kb on + strand at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.009 kb on - strand, within MPMX19_04487 at 854.170 kb on + strand, within MPMX19_04487 at 854.170 kb on + strand, within MPMX19_04487 at 854.170 kb on + strand, within MPMX19_04487 at 854.171 kb on - strand, within MPMX19_04487 at 854.171 kb on - strand, within MPMX19_04487 at 854.171 kb on - strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.811 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.956 kb on - strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.217 kb on - strand at 855.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 853,527 + MPMX19_04486 0.45 -2.4 853,893 + -0.4 853,893 + -0.6 853,893 + -0.8 853,893 + +1.2 853,893 + +0.2 853,893 + -0.3 853,894 - +0.2 853,894 - -0.4 853,894 - -1.1 853,894 - -0.6 853,894 - +1.4 853,894 - -0.5 853,894 - -1.1 853,894 - -0.4 853,894 - -0.4 853,894 - +0.7 853,903 + -0.4 853,903 + -0.3 853,987 + MPMX19_04487 0.11 +0.2 853,987 + MPMX19_04487 0.11 -1.3 853,987 + MPMX19_04487 0.11 +0.6 853,988 - MPMX19_04487 0.11 +0.5 853,988 - MPMX19_04487 0.11 -0.8 853,988 - MPMX19_04487 0.11 -0.2 853,988 - MPMX19_04487 0.11 -0.4 853,988 - MPMX19_04487 0.11 -1.2 853,988 - MPMX19_04487 0.11 -1.0 853,988 - MPMX19_04487 0.11 -0.4 854,008 + MPMX19_04487 0.14 -0.1 854,008 + MPMX19_04487 0.14 -1.1 854,009 - MPMX19_04487 0.14 +0.4 854,170 + MPMX19_04487 0.39 +1.0 854,170 + MPMX19_04487 0.39 -0.5 854,170 + MPMX19_04487 0.39 -1.1 854,171 - MPMX19_04487 0.39 -0.3 854,171 - MPMX19_04487 0.39 -0.1 854,171 - MPMX19_04487 0.39 +0.6 854,281 + MPMX19_04487 0.56 -0.4 854,281 + MPMX19_04487 0.56 +1.0 854,281 + MPMX19_04487 0.56 -0.4 854,281 + MPMX19_04487 0.56 +0.6 854,281 + MPMX19_04487 0.56 -1.4 854,281 + MPMX19_04487 0.56 +1.1 854,281 + MPMX19_04487 0.56 +0.6 854,281 + MPMX19_04487 0.56 +0.2 854,282 - MPMX19_04487 0.56 -0.1 854,282 - MPMX19_04487 0.56 -0.5 854,282 - MPMX19_04487 0.56 +1.2 854,353 + MPMX19_04487 0.67 -1.5 854,353 + MPMX19_04487 0.67 -1.1 854,353 + MPMX19_04487 0.67 -1.0 854,353 + MPMX19_04487 0.67 -1.0 854,353 + MPMX19_04487 0.67 +0.2 854,353 + MPMX19_04487 0.67 -2.3 854,354 - MPMX19_04487 0.67 -1.6 854,354 - MPMX19_04487 0.67 -0.6 854,354 - MPMX19_04487 0.67 -2.6 854,661 + MPMX19_04488 0.12 -1.5 854,661 + MPMX19_04488 0.12 -0.8 854,661 + MPMX19_04488 0.12 -0.2 854,661 + MPMX19_04488 0.12 -1.0 854,661 + MPMX19_04488 0.12 +0.8 854,661 + MPMX19_04488 0.12 +0.4 854,661 + MPMX19_04488 0.12 +1.2 854,661 + MPMX19_04488 0.12 -0.7 854,661 + MPMX19_04488 0.12 -0.5 854,662 - MPMX19_04488 0.12 -1.9 854,662 - MPMX19_04488 0.12 +0.2 854,662 - MPMX19_04488 0.12 -0.9 854,662 - MPMX19_04488 0.12 -0.7 854,662 - MPMX19_04488 0.12 +1.3 854,662 - MPMX19_04488 0.12 +0.1 854,662 - MPMX19_04488 0.12 -0.8 854,662 - MPMX19_04488 0.12 -0.1 854,662 - MPMX19_04488 0.12 -0.1 854,662 - MPMX19_04488 0.12 -0.1 854,662 - MPMX19_04488 0.12 -1.0 854,682 + MPMX19_04488 0.15 -0.5 854,682 + MPMX19_04488 0.15 -1.1 854,682 + MPMX19_04488 0.15 +0.3 854,682 + MPMX19_04488 0.15 -0.3 854,682 + MPMX19_04488 0.15 +1.2 854,682 + MPMX19_04488 0.15 -0.4 854,682 + MPMX19_04488 0.15 +0.2 854,682 + MPMX19_04488 0.15 -0.9 854,682 + MPMX19_04488 0.15 -0.2 854,682 + MPMX19_04488 0.15 -1.2 854,683 - MPMX19_04488 0.15 -0.3 854,683 - MPMX19_04488 0.15 +0.0 854,683 - MPMX19_04488 0.15 +0.1 854,683 - MPMX19_04488 0.15 -1.0 854,683 - MPMX19_04488 0.15 -0.7 854,683 - MPMX19_04488 0.15 +0.9 854,683 - MPMX19_04488 0.15 +0.3 854,683 - MPMX19_04488 0.15 -0.6 854,683 - MPMX19_04488 0.15 -2.2 854,683 - MPMX19_04488 0.15 -1.6 854,683 - MPMX19_04488 0.15 +1.2 854,683 - MPMX19_04488 0.15 -1.1 854,683 - MPMX19_04488 0.15 +0.4 854,700 + MPMX19_04488 0.18 -0.9 854,700 + MPMX19_04488 0.18 +0.5 854,700 + MPMX19_04488 0.18 +0.2 854,701 - MPMX19_04488 0.18 -0.1 854,701 - MPMX19_04488 0.18 -1.7 854,701 - MPMX19_04488 0.18 -1.4 854,701 - MPMX19_04488 0.18 -0.4 854,811 + MPMX19_04488 0.34 -1.3 854,943 + MPMX19_04488 0.54 -2.3 854,943 + MPMX19_04488 0.54 -0.8 854,943 + MPMX19_04488 0.54 +0.3 854,943 + MPMX19_04488 0.54 +0.4 854,943 + MPMX19_04488 0.54 +0.2 854,944 - MPMX19_04488 0.54 -0.6 854,944 - MPMX19_04488 0.54 -0.5 854,955 + MPMX19_04488 0.56 -0.1 854,955 + MPMX19_04488 0.56 +0.2 854,956 - MPMX19_04488 0.56 -0.1 855,075 + MPMX19_04488 0.74 -1.3 855,075 + MPMX19_04488 0.74 -0.7 855,075 + MPMX19_04488 0.74 -1.4 855,075 + MPMX19_04488 0.74 +1.2 855,076 - MPMX19_04488 0.74 +0.1 855,076 - MPMX19_04488 0.74 -0.3 855,076 - MPMX19_04488 0.74 +0.0 855,076 - MPMX19_04488 0.74 -1.3 855,076 - MPMX19_04488 0.74 -0.8 855,076 - MPMX19_04488 0.74 -1.1 855,217 - -0.9 855,290 + +0.2
Or see this region's nucleotide sequence