Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04482

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04481 and MPMX19_04482 are separated by 210 nucleotidesMPMX19_04482 and MPMX19_04483 are separated by 43 nucleotides MPMX19_04481: MPMX19_04481 - hypothetical protein, at 848,840 to 849,448 _04481 MPMX19_04482: MPMX19_04482 - HTH-type transcriptional regulator DegA, at 849,659 to 850,759 _04482 MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837 _04483 Position (kb) 849 850 851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 848.901 kb on + strand, within MPMX19_04481at 848.902 kb on - strand, within MPMX19_04481at 848.902 kb on - strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.245 kb on + strand, within MPMX19_04481at 849.246 kb on - strand, within MPMX19_04481at 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.448 kb on + strandat 849.448 kb on + strandat 849.449 kb on - strandat 849.496 kb on + strandat 849.496 kb on + strandat 849.496 kb on + strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.204 kb on - strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.509 kb on + strand, within MPMX19_04482at 850.510 kb on - strand, within MPMX19_04482at 851.044 kb on + strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.299 kb on + strand, within MPMX19_04483at 851.299 kb on + strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.740 kb on + strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.743 kb on + strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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848,901 + MPMX19_04481 0.10 +0.6
848,902 - MPMX19_04481 0.10 -0.7
848,902 - MPMX19_04481 0.10 -0.1
849,027 + MPMX19_04481 0.31 -1.8
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 -0.4
849,027 + MPMX19_04481 0.31 -1.4
849,027 + MPMX19_04481 0.31 +2.4
849,027 + MPMX19_04481 0.31 +0.1
849,027 + MPMX19_04481 0.31 +0.3
849,027 + MPMX19_04481 0.31 +0.0
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 +1.2
849,027 + MPMX19_04481 0.31 +0.1
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 +0.3
849,027 + MPMX19_04481 0.31 +0.7
849,027 + MPMX19_04481 0.31 -0.3
849,027 + MPMX19_04481 0.31 -1.7
849,028 - MPMX19_04481 0.31 -1.1
849,028 - MPMX19_04481 0.31 +0.3
849,028 - MPMX19_04481 0.31 -0.1
849,028 - MPMX19_04481 0.31 -0.5
849,028 - MPMX19_04481 0.31 -1.9
849,028 - MPMX19_04481 0.31 -0.3
849,028 - MPMX19_04481 0.31 +1.2
849,028 - MPMX19_04481 0.31 -0.7
849,028 - MPMX19_04481 0.31 -0.1
849,028 - MPMX19_04481 0.31 +0.0
849,028 - MPMX19_04481 0.31 +1.2
849,245 + MPMX19_04481 0.67 +0.7
849,246 - MPMX19_04481 0.67 +0.3
849,425 + +0.1
849,425 + +1.0
849,425 + +0.8
849,425 + -0.4
849,425 + -0.2
849,425 + +1.0
849,425 + -0.3
849,425 + -0.4
849,425 + -0.5
849,425 + -1.0
849,425 + +0.0
849,426 - -0.8
849,426 - -0.9
849,426 - +1.3
849,426 - -0.1
849,426 - -0.4
849,426 - -0.0
849,426 - +0.5
849,426 - -0.7
849,426 - -2.0
849,426 - -0.6
849,426 - -2.0
849,426 - -0.7
849,426 - -0.4
849,426 - -0.6
849,426 - +0.9
849,426 - +0.2
849,426 - -0.8
849,426 - +0.6
849,426 - +0.3
849,448 + -1.6
849,448 + -0.4
849,449 - -1.0
849,496 + -0.8
849,496 + -0.3
849,496 + -0.8
849,497 - -0.9
849,497 - +1.2
849,497 - +1.2
849,497 - +0.2
849,497 - -0.4
849,497 - -0.4
849,497 - -0.3
849,497 - -0.4
850,101 + MPMX19_04482 0.40 -0.1
850,101 + MPMX19_04482 0.40 +0.3
850,101 + MPMX19_04482 0.40 +0.2
850,101 + MPMX19_04482 0.40 -1.4
850,101 + MPMX19_04482 0.40 +0.6
850,102 - MPMX19_04482 0.40 +0.4
850,102 - MPMX19_04482 0.40 +0.8
850,102 - MPMX19_04482 0.40 +0.5
850,102 - MPMX19_04482 0.40 -1.5
850,102 - MPMX19_04482 0.40 +0.6
850,203 + MPMX19_04482 0.49 -1.1
850,203 + MPMX19_04482 0.49 +1.4
850,203 + MPMX19_04482 0.49 -0.6
850,204 - MPMX19_04482 0.50 +0.2
850,341 + MPMX19_04482 0.62 +1.8
850,341 + MPMX19_04482 0.62 -0.1
850,341 + MPMX19_04482 0.62 -1.0
850,342 - MPMX19_04482 0.62 -0.6
850,342 - MPMX19_04482 0.62 -0.5
850,342 - MPMX19_04482 0.62 +0.2
850,342 - MPMX19_04482 0.62 -0.1
850,347 + MPMX19_04482 0.62 -1.1
850,347 + MPMX19_04482 0.62 -0.8
850,347 + MPMX19_04482 0.62 +0.4
850,347 + MPMX19_04482 0.62 -0.8
850,348 - MPMX19_04482 0.63 -0.9
850,348 - MPMX19_04482 0.63 -0.1
850,374 + MPMX19_04482 0.65 -0.4
850,374 + MPMX19_04482 0.65 +1.2
850,374 + MPMX19_04482 0.65 -1.4
850,509 + MPMX19_04482 0.77 -1.4
850,510 - MPMX19_04482 0.77 -0.1
851,044 + MPMX19_04483 0.23 +0.2
851,045 - MPMX19_04483 0.23 -1.0
851,045 - MPMX19_04483 0.23 +0.1
851,045 - MPMX19_04483 0.23 -1.6
851,045 - MPMX19_04483 0.23 -0.1
851,173 + MPMX19_04483 0.36 -2.9
851,173 + MPMX19_04483 0.36 +0.1
851,173 + MPMX19_04483 0.36 -1.9
851,173 + MPMX19_04483 0.36 -1.2
851,174 - MPMX19_04483 0.36 -0.1
851,174 - MPMX19_04483 0.36 +0.4
851,174 - MPMX19_04483 0.36 -0.6
851,174 - MPMX19_04483 0.36 -1.4
851,299 + MPMX19_04483 0.48 -0.5
851,299 + MPMX19_04483 0.48 -1.4
851,300 - MPMX19_04483 0.48 -1.7
851,300 - MPMX19_04483 0.48 +0.6
851,300 - MPMX19_04483 0.48 +0.0
851,300 - MPMX19_04483 0.48 -1.2
851,656 + MPMX19_04483 0.82 -1.1
851,656 + MPMX19_04483 0.82 +1.0
851,656 + MPMX19_04483 0.82 -1.1
851,656 + MPMX19_04483 0.82 -0.7
851,656 + MPMX19_04483 0.82 -1.0
851,657 - MPMX19_04483 0.83 +0.9
851,657 - MPMX19_04483 0.83 -2.0
851,740 + +0.7
851,741 - -0.3
851,741 - -0.1
851,741 - -2.0
851,741 - -0.4
851,743 + -1.1
851,744 - +0.4
851,744 - -1.2
851,744 - -2.0
851,744 - -0.3

Or see this region's nucleotide sequence