Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04481

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04480 and MPMX19_04481 are separated by 233 nucleotidesMPMX19_04481 and MPMX19_04482 are separated by 210 nucleotides MPMX19_04480: MPMX19_04480 - Zinc-type alcohol dehydrogenase-like protein, at 847,605 to 848,606 _04480 MPMX19_04481: MPMX19_04481 - hypothetical protein, at 848,840 to 849,448 _04481 MPMX19_04482: MPMX19_04482 - HTH-type transcriptional regulator DegA, at 849,659 to 850,759 _04482 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 848.103 kb on + strand, within MPMX19_04480at 848.103 kb on + strand, within MPMX19_04480at 848.103 kb on + strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.104 kb on - strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.187 kb on + strand, within MPMX19_04480at 848.188 kb on - strand, within MPMX19_04480at 848.188 kb on - strand, within MPMX19_04480at 848.188 kb on - strand, within MPMX19_04480at 848.188 kb on - strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.189 kb on + strand, within MPMX19_04480at 848.190 kb on - strand, within MPMX19_04480at 848.190 kb on - strand, within MPMX19_04480at 848.190 kb on - strand, within MPMX19_04480at 848.190 kb on - strand, within MPMX19_04480at 848.190 kb on - strand, within MPMX19_04480at 848.223 kb on + strand, within MPMX19_04480at 848.223 kb on + strand, within MPMX19_04480at 848.224 kb on - strand, within MPMX19_04480at 848.224 kb on - strand, within MPMX19_04480at 848.224 kb on - strand, within MPMX19_04480at 848.370 kb on - strand, within MPMX19_04480at 848.381 kb on + strand, within MPMX19_04480at 848.381 kb on + strand, within MPMX19_04480at 848.381 kb on + strand, within MPMX19_04480at 848.381 kb on + strand, within MPMX19_04480at 848.382 kb on - strand, within MPMX19_04480at 848.428 kb on - strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.498 kb on + strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.499 kb on - strand, within MPMX19_04480at 848.556 kb on + strandat 848.556 kb on + strandat 848.556 kb on + strandat 848.556 kb on + strandat 848.556 kb on + strandat 848.556 kb on + strandat 848.557 kb on - strandat 848.557 kb on - strandat 848.557 kb on - strandat 848.557 kb on - strandat 848.583 kb on - strandat 848.583 kb on - strandat 848.657 kb on + strandat 848.658 kb on - strandat 848.658 kb on - strandat 848.658 kb on - strandat 848.901 kb on + strand, within MPMX19_04481at 848.902 kb on - strand, within MPMX19_04481at 848.902 kb on - strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.027 kb on + strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.028 kb on - strand, within MPMX19_04481at 849.245 kb on + strand, within MPMX19_04481at 849.246 kb on - strand, within MPMX19_04481at 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.425 kb on + strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.426 kb on - strandat 849.448 kb on + strandat 849.448 kb on + strandat 849.449 kb on - strandat 849.496 kb on + strandat 849.496 kb on + strandat 849.496 kb on + strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 849.497 kb on - strandat 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.204 kb on - strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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848,103 + MPMX19_04480 0.50 -0.9
848,103 + MPMX19_04480 0.50 -0.1
848,103 + MPMX19_04480 0.50 -1.7
848,104 - MPMX19_04480 0.50 +0.6
848,104 - MPMX19_04480 0.50 -0.3
848,104 - MPMX19_04480 0.50 -2.4
848,104 - MPMX19_04480 0.50 +1.2
848,104 - MPMX19_04480 0.50 +0.2
848,104 - MPMX19_04480 0.50 -0.3
848,187 + MPMX19_04480 0.58 -0.1
848,187 + MPMX19_04480 0.58 +1.6
848,187 + MPMX19_04480 0.58 +1.4
848,187 + MPMX19_04480 0.58 +0.2
848,187 + MPMX19_04480 0.58 -1.5
848,187 + MPMX19_04480 0.58 +0.6
848,187 + MPMX19_04480 0.58 -1.0
848,187 + MPMX19_04480 0.58 -1.0
848,188 - MPMX19_04480 0.58 +0.4
848,188 - MPMX19_04480 0.58 -0.8
848,188 - MPMX19_04480 0.58 +0.6
848,188 - MPMX19_04480 0.58 -0.5
848,189 + MPMX19_04480 0.58 -1.1
848,189 + MPMX19_04480 0.58 -0.0
848,189 + MPMX19_04480 0.58 +1.0
848,189 + MPMX19_04480 0.58 -0.6
848,189 + MPMX19_04480 0.58 -1.2
848,189 + MPMX19_04480 0.58 -0.6
848,189 + MPMX19_04480 0.58 -0.3
848,189 + MPMX19_04480 0.58 +1.1
848,189 + MPMX19_04480 0.58 +0.6
848,189 + MPMX19_04480 0.58 +0.2
848,189 + MPMX19_04480 0.58 -1.4
848,189 + MPMX19_04480 0.58 -0.3
848,190 - MPMX19_04480 0.58 -0.4
848,190 - MPMX19_04480 0.58 +0.6
848,190 - MPMX19_04480 0.58 -0.4
848,190 - MPMX19_04480 0.58 +0.2
848,190 - MPMX19_04480 0.58 +0.9
848,223 + MPMX19_04480 0.62 -0.0
848,223 + MPMX19_04480 0.62 -0.4
848,224 - MPMX19_04480 0.62 +0.8
848,224 - MPMX19_04480 0.62 -0.7
848,224 - MPMX19_04480 0.62 +0.4
848,370 - MPMX19_04480 0.76 -1.4
848,381 + MPMX19_04480 0.77 -1.4
848,381 + MPMX19_04480 0.77 -0.0
848,381 + MPMX19_04480 0.77 -1.8
848,381 + MPMX19_04480 0.77 +1.4
848,382 - MPMX19_04480 0.78 -2.0
848,428 - MPMX19_04480 0.82 +0.2
848,498 + MPMX19_04480 0.89 -1.1
848,498 + MPMX19_04480 0.89 -1.7
848,498 + MPMX19_04480 0.89 -1.3
848,498 + MPMX19_04480 0.89 -1.0
848,498 + MPMX19_04480 0.89 +1.2
848,498 + MPMX19_04480 0.89 -0.1
848,498 + MPMX19_04480 0.89 -1.8
848,498 + MPMX19_04480 0.89 -0.6
848,498 + MPMX19_04480 0.89 +1.2
848,498 + MPMX19_04480 0.89 +2.2
848,498 + MPMX19_04480 0.89 +0.4
848,498 + MPMX19_04480 0.89 -1.4
848,498 + MPMX19_04480 0.89 -1.6
848,499 - MPMX19_04480 0.89 +0.2
848,499 - MPMX19_04480 0.89 -1.3
848,499 - MPMX19_04480 0.89 +0.1
848,499 - MPMX19_04480 0.89 -1.1
848,499 - MPMX19_04480 0.89 -0.1
848,499 - MPMX19_04480 0.89 +0.6
848,499 - MPMX19_04480 0.89 -0.1
848,499 - MPMX19_04480 0.89 -1.6
848,499 - MPMX19_04480 0.89 +0.2
848,499 - MPMX19_04480 0.89 +0.2
848,499 - MPMX19_04480 0.89 +1.5
848,499 - MPMX19_04480 0.89 +0.2
848,499 - MPMX19_04480 0.89 +0.1
848,556 + -0.6
848,556 + -0.9
848,556 + -0.5
848,556 + -0.8
848,556 + -1.7
848,556 + -1.2
848,557 - -0.7
848,557 - -0.1
848,557 - -1.6
848,557 - +0.2
848,583 - +2.2
848,583 - +0.0
848,657 + -1.5
848,658 - -1.0
848,658 - -1.0
848,658 - -0.1
848,901 + MPMX19_04481 0.10 +0.6
848,902 - MPMX19_04481 0.10 -0.7
848,902 - MPMX19_04481 0.10 -0.1
849,027 + MPMX19_04481 0.31 -1.8
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 -0.4
849,027 + MPMX19_04481 0.31 -1.4
849,027 + MPMX19_04481 0.31 +2.4
849,027 + MPMX19_04481 0.31 +0.1
849,027 + MPMX19_04481 0.31 +0.3
849,027 + MPMX19_04481 0.31 +0.0
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 +1.2
849,027 + MPMX19_04481 0.31 +0.1
849,027 + MPMX19_04481 0.31 -1.1
849,027 + MPMX19_04481 0.31 +0.3
849,027 + MPMX19_04481 0.31 +0.7
849,027 + MPMX19_04481 0.31 -0.3
849,027 + MPMX19_04481 0.31 -1.7
849,028 - MPMX19_04481 0.31 -1.1
849,028 - MPMX19_04481 0.31 +0.3
849,028 - MPMX19_04481 0.31 -0.1
849,028 - MPMX19_04481 0.31 -0.5
849,028 - MPMX19_04481 0.31 -1.9
849,028 - MPMX19_04481 0.31 -0.3
849,028 - MPMX19_04481 0.31 +1.2
849,028 - MPMX19_04481 0.31 -0.7
849,028 - MPMX19_04481 0.31 -0.1
849,028 - MPMX19_04481 0.31 +0.0
849,028 - MPMX19_04481 0.31 +1.2
849,245 + MPMX19_04481 0.67 +0.7
849,246 - MPMX19_04481 0.67 +0.3
849,425 + +0.1
849,425 + +1.0
849,425 + +0.8
849,425 + -0.4
849,425 + -0.2
849,425 + +1.0
849,425 + -0.3
849,425 + -0.4
849,425 + -0.5
849,425 + -1.0
849,425 + +0.0
849,426 - -0.8
849,426 - -0.9
849,426 - +1.3
849,426 - -0.1
849,426 - -0.4
849,426 - -0.0
849,426 - +0.5
849,426 - -0.7
849,426 - -2.0
849,426 - -0.6
849,426 - -2.0
849,426 - -0.7
849,426 - -0.4
849,426 - -0.6
849,426 - +0.9
849,426 - +0.2
849,426 - -0.8
849,426 - +0.6
849,426 - +0.3
849,448 + -1.6
849,448 + -0.4
849,449 - -1.0
849,496 + -0.8
849,496 + -0.3
849,496 + -0.8
849,497 - -0.9
849,497 - +1.2
849,497 - +1.2
849,497 - +0.2
849,497 - -0.4
849,497 - -0.4
849,497 - -0.3
849,497 - -0.4
850,101 + MPMX19_04482 0.40 -0.1
850,101 + MPMX19_04482 0.40 +0.3
850,101 + MPMX19_04482 0.40 +0.2
850,101 + MPMX19_04482 0.40 -1.4
850,101 + MPMX19_04482 0.40 +0.6
850,102 - MPMX19_04482 0.40 +0.4
850,102 - MPMX19_04482 0.40 +0.8
850,102 - MPMX19_04482 0.40 +0.5
850,102 - MPMX19_04482 0.40 -1.5
850,102 - MPMX19_04482 0.40 +0.6
850,203 + MPMX19_04482 0.49 -1.1
850,203 + MPMX19_04482 0.49 +1.4
850,203 + MPMX19_04482 0.49 -0.6
850,204 - MPMX19_04482 0.50 +0.2
850,341 + MPMX19_04482 0.62 +1.8
850,341 + MPMX19_04482 0.62 -0.1
850,341 + MPMX19_04482 0.62 -1.0
850,342 - MPMX19_04482 0.62 -0.6
850,342 - MPMX19_04482 0.62 -0.5
850,342 - MPMX19_04482 0.62 +0.2
850,342 - MPMX19_04482 0.62 -0.1
850,347 + MPMX19_04482 0.62 -1.1
850,347 + MPMX19_04482 0.62 -0.8
850,347 + MPMX19_04482 0.62 +0.4
850,347 + MPMX19_04482 0.62 -0.8
850,348 - MPMX19_04482 0.63 -0.9
850,348 - MPMX19_04482 0.63 -0.1
850,374 + MPMX19_04482 0.65 -0.4
850,374 + MPMX19_04482 0.65 +1.2
850,374 + MPMX19_04482 0.65 -1.4

Or see this region's nucleotide sequence