Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04472

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04471 and MPMX19_04472 are separated by 66 nucleotidesMPMX19_04472 and MPMX19_04473 are separated by 78 nucleotides MPMX19_04471: MPMX19_04471 - Bifunctional protein GlmU, at 837,236 to 838,588 _04471 MPMX19_04472: MPMX19_04472 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 838,655 to 840,481 _04472 MPMX19_04473: MPMX19_04473 - IS481 family transposase ISBxe4, at 840,560 to 841,462 _04473 Position (kb) 838 839 840 841Strain fitness (log2 ratio) -2 -1 0 1 2at 838.586 kb on + strandat 838.586 kb on + strandat 840.479 kb on + strandat 840.479 kb on + strandat 840.480 kb on - strandat 840.480 kb on - strandat 840.480 kb on - strandat 840.480 kb on - strandat 840.512 kb on + strandat 840.523 kb on - strandat 840.523 kb on - strandat 840.536 kb on + strandat 840.536 kb on + strandat 840.536 kb on + strandat 840.536 kb on + strandat 840.536 kb on + strandat 840.537 kb on - strandat 840.537 kb on - strandat 840.537 kb on - strandat 840.537 kb on - strandat 840.537 kb on - strandat 840.537 kb on - strandat 840.554 kb on + strandat 840.554 kb on + strandat 840.555 kb on - strandat 840.555 kb on - strandat 840.561 kb on + strandat 840.561 kb on + strandat 840.561 kb on + strandat 840.561 kb on + strandat 840.562 kb on - strandat 840.562 kb on - strandat 840.562 kb on - strandat 840.583 kb on + strandat 840.583 kb on + strandat 840.583 kb on + strandat 840.583 kb on + strandat 840.583 kb on + strandat 840.583 kb on + strandat 840.584 kb on - strandat 840.584 kb on - strandat 840.584 kb on - strandat 840.584 kb on - strandat 840.588 kb on + strandat 840.588 kb on + strandat 840.588 kb on + strandat 840.588 kb on + strandat 840.589 kb on - strandat 840.628 kb on + strandat 840.690 kb on + strand, within MPMX19_04473at 840.691 kb on - strand, within MPMX19_04473at 840.786 kb on + strand, within MPMX19_04473at 840.786 kb on + strand, within MPMX19_04473at 840.786 kb on + strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.787 kb on - strand, within MPMX19_04473at 840.798 kb on + strand, within MPMX19_04473at 840.798 kb on + strand, within MPMX19_04473at 840.798 kb on + strand, within MPMX19_04473at 840.799 kb on - strand, within MPMX19_04473at 840.799 kb on - strand, within MPMX19_04473at 840.799 kb on - strand, within MPMX19_04473at 840.810 kb on - strand, within MPMX19_04473at 840.810 kb on - strand, within MPMX19_04473at 840.838 kb on + strand, within MPMX19_04473at 840.838 kb on + strand, within MPMX19_04473at 840.838 kb on + strand, within MPMX19_04473at 840.838 kb on + strand, within MPMX19_04473at 840.839 kb on - strand, within MPMX19_04473at 840.839 kb on - strand, within MPMX19_04473at 840.839 kb on - strand, within MPMX19_04473at 840.839 kb on - strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.909 kb on + strand, within MPMX19_04473at 840.910 kb on - strand, within MPMX19_04473at 840.910 kb on - strand, within MPMX19_04473at 840.910 kb on - strand, within MPMX19_04473at 841.086 kb on - strand, within MPMX19_04473at 841.086 kb on - strand, within MPMX19_04473at 841.086 kb on - strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.122 kb on + strand, within MPMX19_04473at 841.123 kb on - strand, within MPMX19_04473at 841.123 kb on - strand, within MPMX19_04473at 841.123 kb on - strand, within MPMX19_04473at 841.123 kb on - strand, within MPMX19_04473at 841.129 kb on - strand, within MPMX19_04473at 841.129 kb on - strand, within MPMX19_04473at 841.181 kb on - strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.206 kb on + strand, within MPMX19_04473at 841.207 kb on - strand, within MPMX19_04473at 841.207 kb on - strand, within MPMX19_04473at 841.207 kb on - strand, within MPMX19_04473at 841.207 kb on - strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.293 kb on + strand, within MPMX19_04473at 841.294 kb on - strand, within MPMX19_04473at 841.294 kb on - strand, within MPMX19_04473at 841.294 kb on - strand, within MPMX19_04473

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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838,586 + -1.0
838,586 + -1.6
840,479 + -0.4
840,479 + +1.0
840,480 - -1.5
840,480 - -0.6
840,480 - -0.9
840,480 - -0.6
840,512 + -0.6
840,523 - +0.0
840,523 - +1.0
840,536 + +0.0
840,536 + -1.3
840,536 + -1.6
840,536 + -0.9
840,536 + +0.3
840,537 - +0.1
840,537 - -0.4
840,537 - -1.2
840,537 - -0.6
840,537 - +0.2
840,537 - -0.3
840,554 + -1.5
840,554 + -0.5
840,555 - -0.3
840,555 - +0.1
840,561 + -0.9
840,561 + -1.9
840,561 + +0.1
840,561 + +0.4
840,562 - -2.4
840,562 - +0.4
840,562 - -1.2
840,583 + -1.9
840,583 + +0.3
840,583 + +0.5
840,583 + +0.6
840,583 + +0.6
840,583 + -1.3
840,584 - -1.0
840,584 - -0.1
840,584 - -0.8
840,584 - -0.3
840,588 + +0.4
840,588 + -1.2
840,588 + -0.8
840,588 + -1.9
840,589 - +0.4
840,628 + -0.5
840,690 + MPMX19_04473 0.14 +0.4
840,691 - MPMX19_04473 0.15 -0.8
840,786 + MPMX19_04473 0.25 +1.3
840,786 + MPMX19_04473 0.25 -2.5
840,786 + MPMX19_04473 0.25 +0.6
840,787 - MPMX19_04473 0.25 +1.0
840,787 - MPMX19_04473 0.25 +0.0
840,787 - MPMX19_04473 0.25 +0.0
840,787 - MPMX19_04473 0.25 -0.4
840,787 - MPMX19_04473 0.25 -0.1
840,787 - MPMX19_04473 0.25 +0.1
840,787 - MPMX19_04473 0.25 +0.2
840,798 + MPMX19_04473 0.26 -0.7
840,798 + MPMX19_04473 0.26 +0.6
840,798 + MPMX19_04473 0.26 +0.6
840,799 - MPMX19_04473 0.26 -2.5
840,799 - MPMX19_04473 0.26 +0.9
840,799 - MPMX19_04473 0.26 -1.1
840,810 - MPMX19_04473 0.28 -0.4
840,810 - MPMX19_04473 0.28 -0.1
840,838 + MPMX19_04473 0.31 -0.4
840,838 + MPMX19_04473 0.31 +0.2
840,838 + MPMX19_04473 0.31 -0.3
840,838 + MPMX19_04473 0.31 -2.3
840,839 - MPMX19_04473 0.31 +0.2
840,839 - MPMX19_04473 0.31 -0.4
840,839 - MPMX19_04473 0.31 +0.4
840,839 - MPMX19_04473 0.31 -0.1
840,909 + MPMX19_04473 0.39 +0.6
840,909 + MPMX19_04473 0.39 -0.1
840,909 + MPMX19_04473 0.39 -1.8
840,909 + MPMX19_04473 0.39 +1.2
840,909 + MPMX19_04473 0.39 -0.6
840,909 + MPMX19_04473 0.39 +0.6
840,910 - MPMX19_04473 0.39 +0.2
840,910 - MPMX19_04473 0.39 +0.6
840,910 - MPMX19_04473 0.39 -0.5
841,086 - MPMX19_04473 0.58 +1.4
841,086 - MPMX19_04473 0.58 +0.6
841,086 - MPMX19_04473 0.58 -0.4
841,122 + MPMX19_04473 0.62 -1.4
841,122 + MPMX19_04473 0.62 -0.2
841,122 + MPMX19_04473 0.62 +0.1
841,122 + MPMX19_04473 0.62 -0.4
841,122 + MPMX19_04473 0.62 -1.0
841,122 + MPMX19_04473 0.62 -1.1
841,122 + MPMX19_04473 0.62 -1.0
841,122 + MPMX19_04473 0.62 -0.2
841,122 + MPMX19_04473 0.62 -0.5
841,122 + MPMX19_04473 0.62 -0.7
841,123 - MPMX19_04473 0.62 -0.7
841,123 - MPMX19_04473 0.62 -2.0
841,123 - MPMX19_04473 0.62 -0.8
841,123 - MPMX19_04473 0.62 -1.1
841,129 - MPMX19_04473 0.63 +0.5
841,129 - MPMX19_04473 0.63 +1.2
841,181 - MPMX19_04473 0.69 -1.9
841,206 + MPMX19_04473 0.72 +0.9
841,206 + MPMX19_04473 0.72 -1.8
841,206 + MPMX19_04473 0.72 -0.8
841,206 + MPMX19_04473 0.72 -1.4
841,206 + MPMX19_04473 0.72 -0.7
841,206 + MPMX19_04473 0.72 -1.6
841,206 + MPMX19_04473 0.72 -1.3
841,207 - MPMX19_04473 0.72 +0.3
841,207 - MPMX19_04473 0.72 -0.1
841,207 - MPMX19_04473 0.72 -1.0
841,207 - MPMX19_04473 0.72 +0.3
841,293 + MPMX19_04473 0.81 -1.4
841,293 + MPMX19_04473 0.81 +0.6
841,293 + MPMX19_04473 0.81 +2.2
841,293 + MPMX19_04473 0.81 +0.6
841,293 + MPMX19_04473 0.81 -1.0
841,293 + MPMX19_04473 0.81 -1.0
841,293 + MPMX19_04473 0.81 -0.4
841,293 + MPMX19_04473 0.81 -0.8
841,294 - MPMX19_04473 0.81 -0.8
841,294 - MPMX19_04473 0.81 +0.6
841,294 - MPMX19_04473 0.81 -0.9

Or see this region's nucleotide sequence