Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04465 and MPMX19_04466 are separated by 168 nucleotides MPMX19_04466 and MPMX19_04467 are separated by 216 nucleotides MPMX19_04467 and MPMX19_04468 are separated by 206 nucleotides MPMX19_04468 and MPMX19_04469 overlap by 56 nucleotides MPMX19_04469 and MPMX19_04470 are separated by 502 nucleotides
MPMX19_04465: MPMX19_04465 - Pantothenate synthetase, at 832,642 to 833,550
_04465
MPMX19_04466: MPMX19_04466 - hypothetical protein, at 833,719 to 833,883
_04466
MPMX19_04467: MPMX19_04467 - tRNA-Val, at 834,100 to 834,174
_04467
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
MPMX19_04469: MPMX19_04469 - hypothetical protein, at 835,231 to 835,497
_04469
MPMX19_04470: MPMX19_04470 - hypothetical protein, at 836,000 to 836,410
_04470
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 833.635 kb on + strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.727 kb on + strand at 833.747 kb on + strand, within MPMX19_04466 at 833.747 kb on + strand, within MPMX19_04466 at 833.748 kb on + strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.874 kb on + strand at 833.928 kb on + strand at 833.928 kb on + strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.990 kb on + strand at 833.990 kb on + strand at 833.991 kb on - strand at 833.991 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.954 kb on + strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.955 kb on - strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.964 kb on + strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 834.965 kb on - strand, within MPMX19_04468 at 835.006 kb on - strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.802 kb on + strand at 835.802 kb on + strand at 835.803 kb on - strand at 835.805 kb on + strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.876 kb on + strand at 835.876 kb on + strand at 835.877 kb on - strand at 835.877 kb on - strand at 835.902 kb on + strand at 835.902 kb on + strand at 835.949 kb on + strand at 835.950 kb on - strand at 835.950 kb on - strand at 835.950 kb on - strand at 836.238 kb on - strand, within MPMX19_04470
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 833,635 + -1.1 833,636 - -1.1 833,636 - -1.4 833,636 - -0.5 833,646 + -1.1 833,646 + +1.7 833,646 + +0.1 833,646 + -1.4 833,646 + -0.5 833,647 - -1.5 833,647 - +0.5 833,647 - -0.6 833,647 - +0.9 833,727 + -1.4 833,747 + MPMX19_04466 0.17 -1.3 833,747 + MPMX19_04466 0.17 -1.8 833,748 + MPMX19_04466 0.18 -2.0 833,748 - MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 -0.7 833,748 - MPMX19_04466 0.18 -1.2 833,748 - MPMX19_04466 0.18 +0.3 833,748 - MPMX19_04466 0.18 +0.7 833,748 - MPMX19_04466 0.18 -1.9 833,874 + -0.4 833,928 + -2.0 833,928 + -0.8 833,929 - -0.6 833,929 - -1.4 833,929 - -0.5 833,929 - -1.6 833,929 - +0.4 833,929 - +1.9 833,933 + -2.0 833,933 + -0.5 833,933 + +1.8 833,934 - -0.7 833,934 - +0.9 833,934 - -0.0 833,934 - -0.3 833,934 - +1.5 833,934 - +0.2 833,934 - -2.9 833,934 - -0.3 833,990 + -0.1 833,990 + -0.5 833,991 - -0.6 833,991 - +0.1 834,098 - -0.3 834,098 - -1.0 834,098 - -0.8 834,300 + -0.6 834,301 - -0.4 834,301 - -1.3 834,301 - -1.5 834,531 + MPMX19_04468 0.17 -0.1 834,532 - MPMX19_04468 0.17 -0.6 834,532 - MPMX19_04468 0.17 -0.1 834,532 - MPMX19_04468 0.17 +0.3 834,532 - MPMX19_04468 0.17 -0.9 834,765 + MPMX19_04468 0.42 -1.7 834,765 + MPMX19_04468 0.42 -1.9 834,765 + MPMX19_04468 0.42 +0.2 834,765 + MPMX19_04468 0.42 -0.6 834,765 + MPMX19_04468 0.42 -1.8 834,765 + MPMX19_04468 0.42 -0.9 834,765 + MPMX19_04468 0.42 -0.2 834,765 + MPMX19_04468 0.42 -1.1 834,765 + MPMX19_04468 0.42 -1.1 834,765 + MPMX19_04468 0.42 -0.1 834,766 - MPMX19_04468 0.42 -1.6 834,766 - MPMX19_04468 0.42 -0.8 834,766 - MPMX19_04468 0.42 -0.4 834,766 - MPMX19_04468 0.42 -0.9 834,766 - MPMX19_04468 0.42 +1.5 834,954 + MPMX19_04468 0.63 -0.2 834,954 + MPMX19_04468 0.63 -0.1 834,955 - MPMX19_04468 0.63 -1.3 834,955 - MPMX19_04468 0.63 -0.9 834,964 + MPMX19_04468 0.64 +0.8 834,964 + MPMX19_04468 0.64 -0.4 834,964 + MPMX19_04468 0.64 -0.0 834,964 + MPMX19_04468 0.64 +0.6 834,964 + MPMX19_04468 0.64 +0.4 834,964 + MPMX19_04468 0.64 -1.4 834,964 + MPMX19_04468 0.64 -1.8 834,964 + MPMX19_04468 0.64 +1.2 834,964 + MPMX19_04468 0.64 -0.6 834,964 + MPMX19_04468 0.64 +0.4 834,964 + MPMX19_04468 0.64 -1.3 834,964 + MPMX19_04468 0.64 -0.3 834,964 + MPMX19_04468 0.64 -0.7 834,965 - MPMX19_04468 0.64 -1.6 834,965 - MPMX19_04468 0.64 +1.0 834,965 - MPMX19_04468 0.64 -1.4 834,965 - MPMX19_04468 0.64 -0.6 834,965 - MPMX19_04468 0.64 +1.5 834,965 - MPMX19_04468 0.64 +0.6 834,965 - MPMX19_04468 0.64 -0.1 834,965 - MPMX19_04468 0.64 +0.3 834,965 - MPMX19_04468 0.64 -0.4 834,965 - MPMX19_04468 0.64 -0.3 834,965 - MPMX19_04468 0.64 -1.8 834,965 - MPMX19_04468 0.64 +0.2 834,965 - MPMX19_04468 0.64 -1.4 835,006 - MPMX19_04468 0.69 +0.2 835,047 + MPMX19_04468 0.74 -1.2 835,047 + MPMX19_04468 0.74 -0.8 835,047 + MPMX19_04468 0.74 -1.3 835,047 + MPMX19_04468 0.74 -0.0 835,047 + MPMX19_04468 0.74 -0.3 835,047 + MPMX19_04468 0.74 +0.7 835,047 + MPMX19_04468 0.74 -0.7 835,047 + MPMX19_04468 0.74 -0.0 835,047 + MPMX19_04468 0.74 +1.3 835,047 + MPMX19_04468 0.74 -1.8 835,048 - MPMX19_04468 0.74 +0.7 835,048 - MPMX19_04468 0.74 -0.7 835,048 - MPMX19_04468 0.74 -0.3 835,048 - MPMX19_04468 0.74 -0.2 835,048 - MPMX19_04468 0.74 -0.5 835,048 - MPMX19_04468 0.74 -1.2 835,048 - MPMX19_04468 0.74 -0.8 835,048 - MPMX19_04468 0.74 -0.4 835,048 - MPMX19_04468 0.74 +1.6 835,048 - MPMX19_04468 0.74 +0.3 835,048 - MPMX19_04468 0.74 -0.3 835,065 + MPMX19_04468 0.75 -0.8 835,065 + MPMX19_04468 0.75 -1.3 835,066 - MPMX19_04468 0.76 -0.4 835,066 - MPMX19_04468 0.76 -0.5 835,066 - MPMX19_04468 0.76 -0.5 835,467 + MPMX19_04469 0.88 -1.3 835,467 + MPMX19_04469 0.88 -1.6 835,467 + MPMX19_04469 0.88 +1.3 835,467 + MPMX19_04469 0.88 -2.1 835,467 + MPMX19_04469 0.88 -1.1 835,467 + MPMX19_04469 0.88 -1.7 835,467 + MPMX19_04469 0.88 -0.5 835,468 - MPMX19_04469 0.89 +0.0 835,468 - MPMX19_04469 0.89 -0.8 835,468 - MPMX19_04469 0.89 -0.3 835,468 - MPMX19_04469 0.89 +1.4 835,802 + -0.0 835,802 + -1.1 835,803 - -0.1 835,805 + -0.9 835,806 - -0.4 835,806 - +1.2 835,806 - +0.6 835,813 + -1.4 835,813 + -0.3 835,813 + +1.0 835,813 + -1.3 835,813 + -1.4 835,813 + -1.0 835,813 + -0.7 835,813 + -0.8 835,813 + -0.4 835,814 - -0.1 835,814 - -0.3 835,814 - +0.6 835,814 - +0.1 835,814 - +0.2 835,814 - -0.6 835,814 - -0.4 835,814 - -0.6 835,814 - -0.1 835,814 - -0.1 835,814 - -1.1 835,814 - -0.1 835,817 + -0.2 835,817 + -0.8 835,817 + -0.8 835,817 + -0.1 835,817 + +0.8 835,817 + +1.8 835,818 - -0.2 835,818 - -0.5 835,818 - +1.2 835,818 - -0.5 835,818 - +1.2 835,818 - +1.2 835,837 + -0.0 835,837 + +0.2 835,837 + -1.3 835,837 + -0.1 835,837 + +0.6 835,837 + -0.3 835,837 + +0.7 835,837 + -1.5 835,837 + -0.4 835,837 + -0.1 835,837 + -1.1 835,837 + -1.9 835,837 + +0.3 835,837 + -1.4 835,837 + +1.6 835,837 + -0.5 835,837 + -0.6 835,838 - -3.0 835,838 - -1.4 835,838 - -0.1 835,838 - -0.7 835,838 - +1.8 835,838 - -0.4 835,838 - -1.6 835,838 - -2.3 835,838 - -1.8 835,838 - +0.3 835,838 - -1.0 835,838 - -1.3 835,838 - -0.8 835,838 - +0.0 835,876 + -0.8 835,876 + +0.2 835,877 - -0.8 835,877 - -1.2 835,902 + +2.6 835,902 + +1.0 835,949 + +0.4 835,950 - -1.6 835,950 - -1.8 835,950 - +0.9 836,238 - MPMX19_04470 0.58 -1.6
Or see this region's nucleotide sequence