Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04449

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04448 and MPMX19_04449 are separated by 152 nucleotidesMPMX19_04449 and MPMX19_04450 are separated by 86 nucleotides MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261 _04448 MPMX19_04449: MPMX19_04449 - Inosine-5'-monophosphate dehydrogenase, at 816,414 to 816,923 _04449 MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038 _04450 Position (kb) 816 817Strain fitness (log2 ratio) -2 -1 0 1at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.964 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.301 kb on - strandat 816.301 kb on - strandat 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 817.068 kb on + strandat 817.068 kb on + strandat 817.068 kb on + strandat 817.069 kb on - strandat 817.069 kb on - strandat 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.710 kb on + strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.723 kb on - strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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815,532 - MPMX19_04448 0.38 +0.6
815,532 - MPMX19_04448 0.38 +0.1
815,532 - MPMX19_04448 0.38 +0.3
815,532 - MPMX19_04448 0.38 -0.8
815,532 - MPMX19_04448 0.38 +1.5
815,792 + MPMX19_04448 0.60 -0.7
815,792 + MPMX19_04448 0.60 +1.2
815,792 + MPMX19_04448 0.60 -2.4
815,792 + MPMX19_04448 0.60 -2.5
815,823 - MPMX19_04448 0.62 +0.6
815,823 - MPMX19_04448 0.62 +0.3
815,823 - MPMX19_04448 0.62 -1.5
815,823 - MPMX19_04448 0.62 +0.4
815,823 - MPMX19_04448 0.62 -0.1
815,823 - MPMX19_04448 0.62 -1.3
815,925 - MPMX19_04448 0.71 +0.3
815,925 - MPMX19_04448 0.71 +0.9
815,925 - MPMX19_04448 0.71 +0.3
815,951 + MPMX19_04448 0.73 -1.0
815,951 + MPMX19_04448 0.73 -0.3
815,951 + MPMX19_04448 0.73 +0.1
815,951 + MPMX19_04448 0.73 -1.6
815,951 + MPMX19_04448 0.73 -1.3
815,951 + MPMX19_04448 0.73 -0.8
815,964 + MPMX19_04448 0.75 +0.0
816,113 + MPMX19_04448 0.87 -1.6
816,113 + MPMX19_04448 0.87 +0.6
816,113 + MPMX19_04448 0.87 -1.7
816,301 - +0.7
816,301 - -0.4
816,670 + MPMX19_04449 0.50 -0.8
816,670 + MPMX19_04449 0.50 +0.2
816,670 + MPMX19_04449 0.50 -1.1
816,671 - MPMX19_04449 0.50 -0.4
816,671 - MPMX19_04449 0.50 +0.0
817,068 + -0.8
817,068 + -0.2
817,068 + -2.0
817,069 - -0.6
817,069 - -0.5
817,560 + MPMX19_04450 0.53 +0.4
817,560 + MPMX19_04450 0.53 +0.9
817,560 + MPMX19_04450 0.53 +0.1
817,561 - MPMX19_04450 0.54 -1.6
817,561 - MPMX19_04450 0.54 -1.1
817,561 - MPMX19_04450 0.54 -1.7
817,561 - MPMX19_04450 0.54 -1.5
817,561 - MPMX19_04450 0.54 -0.3
817,561 - MPMX19_04450 0.54 -1.7
817,561 - MPMX19_04450 0.54 -0.5
817,561 - MPMX19_04450 0.54 -0.8
817,561 - MPMX19_04450 0.54 +0.3
817,561 - MPMX19_04450 0.54 +1.2
817,605 + MPMX19_04450 0.58 -0.1
817,605 + MPMX19_04450 0.58 +0.5
817,710 + MPMX19_04450 0.68 +1.6
817,711 - MPMX19_04450 0.68 -0.1
817,711 - MPMX19_04450 0.68 -0.9
817,711 - MPMX19_04450 0.68 -1.0
817,711 - MPMX19_04450 0.68 -1.5
817,716 + MPMX19_04450 0.69 -1.1
817,716 + MPMX19_04450 0.69 +0.6
817,716 + MPMX19_04450 0.69 -0.6
817,716 + MPMX19_04450 0.69 -0.4
817,716 + MPMX19_04450 0.69 -0.1
817,716 + MPMX19_04450 0.69 +0.2
817,716 + MPMX19_04450 0.69 -1.6
817,716 + MPMX19_04450 0.69 -1.0
817,716 + MPMX19_04450 0.69 -1.6
817,717 - MPMX19_04450 0.69 -0.1
817,717 - MPMX19_04450 0.69 -0.3
817,722 + MPMX19_04450 0.69 -0.1
817,722 + MPMX19_04450 0.69 -0.9
817,722 + MPMX19_04450 0.69 -1.6
817,722 + MPMX19_04450 0.69 -0.4
817,723 - MPMX19_04450 0.69 -0.8
817,830 + MPMX19_04450 0.80 +0.3
817,830 + MPMX19_04450 0.80 +0.9
817,830 + MPMX19_04450 0.80 -0.0
817,830 + MPMX19_04450 0.80 -0.1
817,830 + MPMX19_04450 0.80 -0.9
817,830 + MPMX19_04450 0.80 -0.5
817,830 + MPMX19_04450 0.80 +0.2
817,831 - MPMX19_04450 0.80 -1.1
817,831 - MPMX19_04450 0.80 -0.7
817,831 - MPMX19_04450 0.80 +0.0
817,831 - MPMX19_04450 0.80 -0.4
817,831 - MPMX19_04450 0.80 +0.0
817,831 - MPMX19_04450 0.80 -0.1
817,831 - MPMX19_04450 0.80 -1.6

Or see this region's nucleotide sequence