Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04448

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04446 and MPMX19_04447 are separated by 4 nucleotidesMPMX19_04447 and MPMX19_04448 are separated by 13 nucleotidesMPMX19_04448 and MPMX19_04449 are separated by 152 nucleotidesMPMX19_04449 and MPMX19_04450 are separated by 86 nucleotides MPMX19_04446: MPMX19_04446 - NAD(P) transhydrogenase subunit beta, at 813,260 to 814,654 _04446 MPMX19_04447: MPMX19_04447 - hypothetical protein, at 814,659 to 815,078 _04447 MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261 _04448 MPMX19_04449: MPMX19_04449 - Inosine-5'-monophosphate dehydrogenase, at 816,414 to 816,923 _04449 MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038 _04450 Position (kb) 815 816 817Strain fitness (log2 ratio) -2 -1 0 1at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.964 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.113 kb on + strand, within MPMX19_04448at 816.301 kb on - strandat 816.301 kb on - strandat 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.670 kb on + strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 816.671 kb on - strand, within MPMX19_04449at 817.068 kb on + strandat 817.068 kb on + strandat 817.068 kb on + strandat 817.069 kb on - strandat 817.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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814,323 + MPMX19_04446 0.76 -1.0
814,323 + MPMX19_04446 0.76 +0.2
814,323 + MPMX19_04446 0.76 -0.5
814,338 + MPMX19_04446 0.77 -0.1
814,338 + MPMX19_04446 0.77 -1.0
814,338 + MPMX19_04446 0.77 -0.6
814,885 + MPMX19_04447 0.54 -0.1
814,885 + MPMX19_04447 0.54 -1.9
814,885 + MPMX19_04447 0.54 -0.8
814,885 + MPMX19_04447 0.54 -1.3
814,885 + MPMX19_04447 0.54 -0.8
814,885 + MPMX19_04447 0.54 -0.1
814,885 + MPMX19_04447 0.54 +0.4
814,885 + MPMX19_04447 0.54 +0.3
814,885 + MPMX19_04447 0.54 -1.4
814,885 + MPMX19_04447 0.54 -0.6
814,885 + MPMX19_04447 0.54 +0.1
814,885 + MPMX19_04447 0.54 +0.1
814,885 + MPMX19_04447 0.54 -1.5
814,885 + MPMX19_04447 0.54 +0.9
814,885 + MPMX19_04447 0.54 -1.0
814,885 + MPMX19_04447 0.54 -0.2
814,885 + MPMX19_04447 0.54 -1.1
814,885 + MPMX19_04447 0.54 -0.6
814,888 + MPMX19_04447 0.55 +0.3
814,888 + MPMX19_04447 0.55 -1.5
814,888 + MPMX19_04447 0.55 -0.0
814,888 + MPMX19_04447 0.55 +0.5
814,888 + MPMX19_04447 0.55 -1.1
815,289 - MPMX19_04448 0.17 +0.2
815,289 - MPMX19_04448 0.17 -0.1
815,289 - MPMX19_04448 0.17 -0.2
815,289 - MPMX19_04448 0.17 +0.4
815,289 - MPMX19_04448 0.17 +0.2
815,289 - MPMX19_04448 0.17 -0.1
815,289 - MPMX19_04448 0.17 -0.6
815,289 - MPMX19_04448 0.17 -0.9
815,289 - MPMX19_04448 0.17 +0.5
815,532 - MPMX19_04448 0.38 +0.6
815,532 - MPMX19_04448 0.38 +0.1
815,532 - MPMX19_04448 0.38 +0.3
815,532 - MPMX19_04448 0.38 -0.8
815,532 - MPMX19_04448 0.38 +1.5
815,792 + MPMX19_04448 0.60 -0.7
815,792 + MPMX19_04448 0.60 +1.2
815,792 + MPMX19_04448 0.60 -2.4
815,792 + MPMX19_04448 0.60 -2.5
815,823 - MPMX19_04448 0.62 +0.6
815,823 - MPMX19_04448 0.62 +0.3
815,823 - MPMX19_04448 0.62 -1.5
815,823 - MPMX19_04448 0.62 +0.4
815,823 - MPMX19_04448 0.62 -0.1
815,823 - MPMX19_04448 0.62 -1.3
815,925 - MPMX19_04448 0.71 +0.3
815,925 - MPMX19_04448 0.71 +0.9
815,925 - MPMX19_04448 0.71 +0.3
815,951 + MPMX19_04448 0.73 -1.0
815,951 + MPMX19_04448 0.73 -0.3
815,951 + MPMX19_04448 0.73 +0.1
815,951 + MPMX19_04448 0.73 -1.6
815,951 + MPMX19_04448 0.73 -1.3
815,951 + MPMX19_04448 0.73 -0.8
815,964 + MPMX19_04448 0.75 +0.0
816,113 + MPMX19_04448 0.87 -1.6
816,113 + MPMX19_04448 0.87 +0.6
816,113 + MPMX19_04448 0.87 -1.7
816,301 - +0.7
816,301 - -0.4
816,670 + MPMX19_04449 0.50 -0.8
816,670 + MPMX19_04449 0.50 +0.2
816,670 + MPMX19_04449 0.50 -1.1
816,671 - MPMX19_04449 0.50 -0.4
816,671 - MPMX19_04449 0.50 +0.0
817,068 + -0.8
817,068 + -0.2
817,068 + -2.0
817,069 - -0.6
817,069 - -0.5

Or see this region's nucleotide sequence