Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04446

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04444 and MPMX19_04445 are separated by 8 nucleotidesMPMX19_04445 and MPMX19_04446 are separated by 69 nucleotidesMPMX19_04446 and MPMX19_04447 are separated by 4 nucleotidesMPMX19_04447 and MPMX19_04448 are separated by 13 nucleotides MPMX19_04444: MPMX19_04444 - hypothetical protein, at 811,752 to 812,669 _04444 MPMX19_04445: MPMX19_04445 - Uric acid degradation bifunctional protein, at 812,678 to 813,190 _04445 MPMX19_04446: MPMX19_04446 - NAD(P) transhydrogenase subunit beta, at 813,260 to 814,654 _04446 MPMX19_04447: MPMX19_04447 - hypothetical protein, at 814,659 to 815,078 _04447 MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261 _04448 Position (kb) 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 812.304 kb on + strand, within MPMX19_04444at 812.304 kb on + strand, within MPMX19_04444at 812.304 kb on + strand, within MPMX19_04444at 812.304 kb on + strand, within MPMX19_04444at 812.304 kb on + strand, within MPMX19_04444at 812.304 kb on + strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.305 kb on - strand, within MPMX19_04444at 812.319 kb on + strand, within MPMX19_04444at 812.319 kb on + strand, within MPMX19_04444at 812.337 kb on + strand, within MPMX19_04444at 812.337 kb on + strand, within MPMX19_04444at 812.337 kb on + strand, within MPMX19_04444at 812.338 kb on - strand, within MPMX19_04444at 812.379 kb on + strand, within MPMX19_04444at 812.379 kb on + strand, within MPMX19_04444at 812.379 kb on + strand, within MPMX19_04444at 812.379 kb on + strand, within MPMX19_04444at 812.451 kb on + strand, within MPMX19_04444at 812.452 kb on - strand, within MPMX19_04444at 812.452 kb on - strand, within MPMX19_04444at 812.478 kb on + strand, within MPMX19_04444at 812.478 kb on + strand, within MPMX19_04444at 812.479 kb on - strand, within MPMX19_04444at 812.479 kb on - strand, within MPMX19_04444at 812.479 kb on - strand, within MPMX19_04444at 812.479 kb on - strand, within MPMX19_04444at 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.580 kb on + strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.581 kb on - strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.655 kb on + strandat 812.656 kb on - strandat 812.656 kb on - strandat 812.656 kb on - strandat 812.656 kb on - strandat 812.656 kb on - strandat 812.684 kb on + strandat 812.684 kb on + strandat 812.685 kb on - strandat 812.685 kb on - strandat 812.685 kb on - strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.146 kb on + strandat 813.147 kb on - strandat 813.147 kb on - strandat 813.147 kb on - strandat 813.202 kb on + strandat 813.248 kb on + strandat 813.248 kb on + strandat 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.435 kb on + strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.436 kb on - strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.630 kb on + strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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812,304 + MPMX19_04444 0.60 -0.4
812,304 + MPMX19_04444 0.60 -0.8
812,304 + MPMX19_04444 0.60 +1.5
812,304 + MPMX19_04444 0.60 -0.1
812,304 + MPMX19_04444 0.60 -1.0
812,304 + MPMX19_04444 0.60 +0.7
812,305 - MPMX19_04444 0.60 +0.7
812,305 - MPMX19_04444 0.60 -0.1
812,305 - MPMX19_04444 0.60 -0.3
812,305 - MPMX19_04444 0.60 +1.2
812,305 - MPMX19_04444 0.60 -1.5
812,305 - MPMX19_04444 0.60 +0.6
812,305 - MPMX19_04444 0.60 -0.6
812,319 + MPMX19_04444 0.62 -1.5
812,319 + MPMX19_04444 0.62 -1.3
812,337 + MPMX19_04444 0.64 +1.5
812,337 + MPMX19_04444 0.64 +1.2
812,337 + MPMX19_04444 0.64 -0.1
812,338 - MPMX19_04444 0.64 +1.0
812,379 + MPMX19_04444 0.68 -1.0
812,379 + MPMX19_04444 0.68 +0.9
812,379 + MPMX19_04444 0.68 -1.9
812,379 + MPMX19_04444 0.68 -1.1
812,451 + MPMX19_04444 0.76 -0.2
812,452 - MPMX19_04444 0.76 -1.7
812,452 - MPMX19_04444 0.76 -0.7
812,478 + MPMX19_04444 0.79 -2.5
812,478 + MPMX19_04444 0.79 +0.8
812,479 - MPMX19_04444 0.79 -1.0
812,479 - MPMX19_04444 0.79 +0.3
812,479 - MPMX19_04444 0.79 -0.1
812,479 - MPMX19_04444 0.79 -0.4
812,580 + +0.3
812,580 + -0.1
812,580 + -0.4
812,580 + -0.2
812,580 + -1.7
812,580 + -0.4
812,580 + +0.2
812,580 + -0.6
812,580 + +0.4
812,580 + +0.3
812,581 - +1.9
812,581 - +0.6
812,581 - -0.6
812,581 - -0.4
812,581 - +0.2
812,581 - -0.6
812,581 - -0.5
812,581 - -3.3
812,581 - -0.4
812,581 - -1.0
812,581 - -1.1
812,581 - +1.4
812,581 - -0.8
812,581 - -1.2
812,655 + -0.5
812,655 + -0.7
812,655 + -3.3
812,655 + -0.5
812,655 + -1.6
812,655 + -1.8
812,655 + -0.2
812,655 + +0.4
812,655 + -0.8
812,655 + -0.0
812,656 - +0.7
812,656 - -2.1
812,656 - -0.1
812,656 - +2.2
812,656 - -0.5
812,684 + -1.4
812,684 + -1.7
812,685 - -1.5
812,685 - -1.1
812,685 - -0.8
813,146 + -1.0
813,146 + -0.6
813,146 + -0.9
813,146 + -1.1
813,146 + -0.5
813,146 + -0.2
813,146 + -2.3
813,146 + -1.0
813,147 - -0.4
813,147 - +1.0
813,147 - +0.8
813,202 + -1.4
813,248 + +0.6
813,248 + +0.6
813,435 + MPMX19_04446 0.13 -0.5
813,435 + MPMX19_04446 0.13 -0.0
813,435 + MPMX19_04446 0.13 +1.3
813,435 + MPMX19_04446 0.13 -0.6
813,435 + MPMX19_04446 0.13 -0.2
813,435 + MPMX19_04446 0.13 +0.6
813,435 + MPMX19_04446 0.13 -0.7
813,435 + MPMX19_04446 0.13 -0.8
813,435 + MPMX19_04446 0.13 -0.9
813,435 + MPMX19_04446 0.13 -1.0
813,435 + MPMX19_04446 0.13 -1.7
813,435 + MPMX19_04446 0.13 -1.8
813,435 + MPMX19_04446 0.13 -0.1
813,435 + MPMX19_04446 0.13 +0.7
813,435 + MPMX19_04446 0.13 -0.6
813,436 - MPMX19_04446 0.13 -0.9
813,436 - MPMX19_04446 0.13 -1.9
813,436 - MPMX19_04446 0.13 -0.4
813,436 - MPMX19_04446 0.13 -2.1
813,436 - MPMX19_04446 0.13 +0.1
813,436 - MPMX19_04446 0.13 -0.9
813,436 - MPMX19_04446 0.13 -0.1
813,436 - MPMX19_04446 0.13 -0.2
813,436 - MPMX19_04446 0.13 +0.8
813,436 - MPMX19_04446 0.13 +0.9
813,436 - MPMX19_04446 0.13 -0.1
813,436 - MPMX19_04446 0.13 +0.2
813,630 + MPMX19_04446 0.27 -0.1
813,630 + MPMX19_04446 0.27 -0.3
813,630 + MPMX19_04446 0.27 +0.1
813,630 + MPMX19_04446 0.27 -0.7
813,630 + MPMX19_04446 0.27 +1.9
813,630 + MPMX19_04446 0.27 -0.8
813,630 + MPMX19_04446 0.27 -1.4
813,754 - MPMX19_04446 0.35 -0.8
813,754 - MPMX19_04446 0.35 -1.6
813,754 - MPMX19_04446 0.35 -0.0
813,754 - MPMX19_04446 0.35 -0.8
813,754 - MPMX19_04446 0.35 -2.0
813,754 - MPMX19_04446 0.35 +0.3
813,754 - MPMX19_04446 0.35 +0.0
813,754 - MPMX19_04446 0.35 -0.4
813,754 - MPMX19_04446 0.35 -1.4
813,754 - MPMX19_04446 0.35 +0.0
813,754 - MPMX19_04446 0.35 -1.2
813,754 - MPMX19_04446 0.35 +0.9
813,754 - MPMX19_04446 0.35 -1.5
813,991 - MPMX19_04446 0.52 -1.3
813,991 - MPMX19_04446 0.52 -0.9
813,991 - MPMX19_04446 0.52 -2.0
813,991 - MPMX19_04446 0.52 +0.6
813,991 - MPMX19_04446 0.52 -1.7
813,991 - MPMX19_04446 0.52 -0.2
813,991 - MPMX19_04446 0.52 -1.0
813,991 - MPMX19_04446 0.52 -0.3
813,991 - MPMX19_04446 0.52 -1.6
814,323 + MPMX19_04446 0.76 -1.0
814,323 + MPMX19_04446 0.76 +0.2
814,323 + MPMX19_04446 0.76 -0.5
814,338 + MPMX19_04446 0.77 -0.1
814,338 + MPMX19_04446 0.77 -1.0
814,338 + MPMX19_04446 0.77 -0.6
814,885 + MPMX19_04447 0.54 -0.1
814,885 + MPMX19_04447 0.54 -1.9
814,885 + MPMX19_04447 0.54 -0.8
814,885 + MPMX19_04447 0.54 -1.3
814,885 + MPMX19_04447 0.54 -0.8
814,885 + MPMX19_04447 0.54 -0.1
814,885 + MPMX19_04447 0.54 +0.4
814,885 + MPMX19_04447 0.54 +0.3
814,885 + MPMX19_04447 0.54 -1.4
814,885 + MPMX19_04447 0.54 -0.6
814,885 + MPMX19_04447 0.54 +0.1
814,885 + MPMX19_04447 0.54 +0.1
814,885 + MPMX19_04447 0.54 -1.5
814,885 + MPMX19_04447 0.54 +0.9
814,885 + MPMX19_04447 0.54 -1.0
814,885 + MPMX19_04447 0.54 -0.2
814,885 + MPMX19_04447 0.54 -1.1
814,885 + MPMX19_04447 0.54 -0.6
814,888 + MPMX19_04447 0.55 +0.3
814,888 + MPMX19_04447 0.55 -1.5
814,888 + MPMX19_04447 0.55 -0.0
814,888 + MPMX19_04447 0.55 +0.5
814,888 + MPMX19_04447 0.55 -1.1
815,289 - MPMX19_04448 0.17 +0.2
815,289 - MPMX19_04448 0.17 -0.1
815,289 - MPMX19_04448 0.17 -0.2
815,289 - MPMX19_04448 0.17 +0.4
815,289 - MPMX19_04448 0.17 +0.2
815,289 - MPMX19_04448 0.17 -0.1
815,289 - MPMX19_04448 0.17 -0.6
815,289 - MPMX19_04448 0.17 -0.9
815,289 - MPMX19_04448 0.17 +0.5
815,532 - MPMX19_04448 0.38 +0.6
815,532 - MPMX19_04448 0.38 +0.1
815,532 - MPMX19_04448 0.38 +0.3
815,532 - MPMX19_04448 0.38 -0.8
815,532 - MPMX19_04448 0.38 +1.5

Or see this region's nucleotide sequence