Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04437 and MPMX19_04438 are separated by 43 nucleotides MPMX19_04438 and MPMX19_04439 are separated by 293 nucleotides
MPMX19_04437: MPMX19_04437 - Oxalyl-CoA decarboxylase, at 802,613 to 804,376
_04437
MPMX19_04438: MPMX19_04438 - hypothetical protein, at 804,420 to 805,109
_04438
MPMX19_04439: MPMX19_04439 - Pca regulon regulatory protein, at 805,403 to 806,236
_04439
Position (kb) 804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.652 kb on + strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.653 kb on - strand, within MPMX19_04437 at 803.740 kb on - strand, within MPMX19_04437 at 803.740 kb on - strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.835 kb on + strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.836 kb on - strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.970 kb on + strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 803.971 kb on - strand, within MPMX19_04437 at 804.229 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.243 kb on + strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.244 kb on - strand at 804.349 kb on + strand at 804.349 kb on + strand at 804.349 kb on + strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.350 kb on - strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.370 kb on + strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.371 kb on - strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.376 kb on + strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.377 kb on - strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.602 kb on + strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.603 kb on - strand, within MPMX19_04438 at 804.694 kb on + strand, within MPMX19_04438 at 804.694 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.728 kb on + strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.729 kb on - strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.730 kb on + strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 804.731 kb on - strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.006 kb on + strand, within MPMX19_04438 at 805.007 kb on - strand, within MPMX19_04438 at 805.007 kb on - strand, within MPMX19_04438 at 805.045 kb on + strand at 805.046 kb on + strand at 805.046 kb on - strand at 805.046 kb on - strand at 805.046 kb on - strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.206 kb on + strand at 805.207 kb on - strand at 805.207 kb on - strand at 805.245 kb on + strand at 805.312 kb on + strand at 805.312 kb on + strand at 805.313 kb on - strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.385 kb on + strand at 805.386 kb on - strand at 805.386 kb on - strand at 805.386 kb on - strand at 805.628 kb on + strand, within MPMX19_04439 at 805.628 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.802 kb on + strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.803 kb on - strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.804 kb on + strand, within MPMX19_04439 at 805.805 kb on - strand, within MPMX19_04439 at 805.805 kb on - strand, within MPMX19_04439 at 805.871 kb on + strand, within MPMX19_04439 at 805.871 kb on + strand, within MPMX19_04439 at 805.872 kb on - strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.931 kb on + strand, within MPMX19_04439 at 805.932 kb on - strand, within MPMX19_04439 at 805.932 kb on - strand, within MPMX19_04439
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 803,652 + MPMX19_04437 0.59 +2.6 803,652 + MPMX19_04437 0.59 -1.4 803,652 + MPMX19_04437 0.59 -0.5 803,652 + MPMX19_04437 0.59 -0.7 803,653 - MPMX19_04437 0.59 -0.4 803,653 - MPMX19_04437 0.59 +1.4 803,653 - MPMX19_04437 0.59 -0.7 803,653 - MPMX19_04437 0.59 -0.1 803,740 - MPMX19_04437 0.64 +0.2 803,740 - MPMX19_04437 0.64 -0.7 803,835 + MPMX19_04437 0.69 -1.2 803,835 + MPMX19_04437 0.69 -1.7 803,835 + MPMX19_04437 0.69 -0.1 803,835 + MPMX19_04437 0.69 -1.2 803,836 - MPMX19_04437 0.69 +0.2 803,836 - MPMX19_04437 0.69 -0.0 803,836 - MPMX19_04437 0.69 -0.8 803,836 - MPMX19_04437 0.69 -0.6 803,836 - MPMX19_04437 0.69 +1.3 803,836 - MPMX19_04437 0.69 +0.6 803,970 + MPMX19_04437 0.77 -0.7 803,970 + MPMX19_04437 0.77 +0.1 803,970 + MPMX19_04437 0.77 -0.2 803,971 - MPMX19_04437 0.77 -0.3 803,971 - MPMX19_04437 0.77 -1.0 803,971 - MPMX19_04437 0.77 -0.5 804,229 + -0.6 804,243 + -0.4 804,243 + +0.2 804,243 + -1.2 804,243 + -0.3 804,243 + -0.7 804,243 + -1.2 804,243 + -1.3 804,243 + -2.3 804,243 + -2.1 804,243 + -0.5 804,243 + -1.0 804,243 + -0.8 804,243 + -0.9 804,243 + -0.5 804,243 + -1.4 804,243 + -1.0 804,243 + +0.0 804,243 + -0.2 804,244 - -0.3 804,244 - -0.7 804,244 - -1.5 804,244 - +0.5 804,244 - -0.1 804,244 - -0.7 804,244 - -1.0 804,244 - -0.1 804,244 - +1.2 804,244 - -0.6 804,244 - +1.2 804,244 - -0.9 804,244 - -1.4 804,349 + -0.5 804,349 + -1.1 804,349 + -0.7 804,350 - -0.2 804,350 - -0.8 804,350 - -0.4 804,350 - +0.1 804,350 - +0.9 804,350 - -0.7 804,370 + -1.4 804,370 + -0.2 804,370 + -1.1 804,370 + -0.5 804,370 + +0.4 804,371 - +0.9 804,371 - +0.3 804,371 - -1.3 804,371 - +0.4 804,371 - -0.0 804,376 + +1.4 804,376 + +0.6 804,376 + -0.8 804,376 + -1.3 804,376 + -0.3 804,376 + -1.0 804,376 + +1.0 804,376 + -1.0 804,376 + -0.4 804,376 + +0.4 804,376 + -1.4 804,376 + -1.0 804,376 + -0.7 804,376 + +0.0 804,376 + -1.1 804,376 + -0.1 804,376 + +0.5 804,376 + +0.2 804,376 + -0.9 804,377 - +0.2 804,377 - -0.4 804,377 - +0.8 804,377 - -1.3 804,377 - +0.6 804,377 - +0.7 804,377 - +1.2 804,377 - -0.4 804,377 - +0.8 804,377 - -0.4 804,377 - -1.1 804,377 - +2.2 804,377 - +1.6 804,377 - -0.9 804,377 - -0.4 804,377 - +1.9 804,377 - -1.1 804,377 - +0.0 804,377 - -1.4 804,377 - -0.6 804,377 - -0.7 804,377 - -0.4 804,377 - -0.3 804,377 - -1.1 804,451 + +0.6 804,451 + -0.2 804,451 + -1.5 804,451 + -0.6 804,451 + -2.0 804,452 - -0.4 804,452 - +0.0 804,452 - -1.1 804,452 - +0.6 804,452 - -2.4 804,452 - -0.9 804,452 - -0.8 804,452 - -1.4 804,602 + MPMX19_04438 0.26 -1.8 804,602 + MPMX19_04438 0.26 +1.2 804,602 + MPMX19_04438 0.26 -2.4 804,602 + MPMX19_04438 0.26 +0.4 804,602 + MPMX19_04438 0.26 +0.2 804,602 + MPMX19_04438 0.26 -1.9 804,602 + MPMX19_04438 0.26 +0.4 804,603 - MPMX19_04438 0.27 -0.5 804,603 - MPMX19_04438 0.27 +1.2 804,603 - MPMX19_04438 0.27 +0.4 804,603 - MPMX19_04438 0.27 -0.6 804,603 - MPMX19_04438 0.27 +0.2 804,603 - MPMX19_04438 0.27 +0.3 804,603 - MPMX19_04438 0.27 -0.6 804,603 - MPMX19_04438 0.27 +0.6 804,603 - MPMX19_04438 0.27 +0.6 804,694 + MPMX19_04438 0.40 +0.4 804,694 + MPMX19_04438 0.40 -1.0 804,728 + MPMX19_04438 0.45 -0.9 804,728 + MPMX19_04438 0.45 -1.0 804,728 + MPMX19_04438 0.45 -0.1 804,729 - MPMX19_04438 0.45 -0.7 804,729 - MPMX19_04438 0.45 -0.2 804,729 - MPMX19_04438 0.45 -0.2 804,729 - MPMX19_04438 0.45 +0.0 804,729 - MPMX19_04438 0.45 -1.5 804,729 - MPMX19_04438 0.45 +0.6 804,729 - MPMX19_04438 0.45 -0.5 804,729 - MPMX19_04438 0.45 -0.8 804,729 - MPMX19_04438 0.45 -0.1 804,729 - MPMX19_04438 0.45 -1.1 804,730 + MPMX19_04438 0.45 +0.2 804,730 + MPMX19_04438 0.45 -1.5 804,730 + MPMX19_04438 0.45 +2.2 804,730 + MPMX19_04438 0.45 -0.1 804,730 + MPMX19_04438 0.45 -1.3 804,731 - MPMX19_04438 0.45 -2.2 804,731 - MPMX19_04438 0.45 +0.4 804,731 - MPMX19_04438 0.45 +0.1 804,731 - MPMX19_04438 0.45 -2.1 804,731 - MPMX19_04438 0.45 +0.2 804,731 - MPMX19_04438 0.45 -0.6 805,006 + MPMX19_04438 0.85 +0.2 805,006 + MPMX19_04438 0.85 +1.2 805,006 + MPMX19_04438 0.85 +2.2 805,006 + MPMX19_04438 0.85 -1.7 805,006 + MPMX19_04438 0.85 +0.8 805,006 + MPMX19_04438 0.85 -0.1 805,006 + MPMX19_04438 0.85 -0.3 805,007 - MPMX19_04438 0.85 +1.7 805,007 - MPMX19_04438 0.85 +0.6 805,045 + +0.0 805,046 + -0.1 805,046 - -0.8 805,046 - -1.0 805,046 - +0.9 805,206 + -0.1 805,206 + -1.1 805,206 + -0.6 805,206 + -2.2 805,207 - +0.9 805,207 - -0.5 805,245 + -0.1 805,312 + -1.1 805,312 + +0.0 805,313 - +0.7 805,385 + -0.8 805,385 + +0.6 805,385 + +1.2 805,385 + -0.2 805,386 - +0.0 805,386 - -1.5 805,386 - -1.1 805,628 + MPMX19_04439 0.27 -0.8 805,628 + MPMX19_04439 0.27 -0.9 805,802 + MPMX19_04439 0.48 -1.4 805,802 + MPMX19_04439 0.48 -1.4 805,802 + MPMX19_04439 0.48 -0.6 805,802 + MPMX19_04439 0.48 -0.5 805,802 + MPMX19_04439 0.48 -0.5 805,802 + MPMX19_04439 0.48 -1.3 805,802 + MPMX19_04439 0.48 -0.3 805,802 + MPMX19_04439 0.48 -0.8 805,802 + MPMX19_04439 0.48 +2.2 805,802 + MPMX19_04439 0.48 -2.2 805,802 + MPMX19_04439 0.48 +1.4 805,802 + MPMX19_04439 0.48 -1.1 805,802 + MPMX19_04439 0.48 +0.3 805,802 + MPMX19_04439 0.48 -1.0 805,802 + MPMX19_04439 0.48 +0.2 805,802 + MPMX19_04439 0.48 -1.5 805,802 + MPMX19_04439 0.48 +1.6 805,803 - MPMX19_04439 0.48 -0.4 805,803 - MPMX19_04439 0.48 +1.2 805,803 - MPMX19_04439 0.48 -0.6 805,803 - MPMX19_04439 0.48 -2.0 805,803 - MPMX19_04439 0.48 +0.2 805,803 - MPMX19_04439 0.48 +0.2 805,803 - MPMX19_04439 0.48 +0.4 805,803 - MPMX19_04439 0.48 -1.6 805,803 - MPMX19_04439 0.48 -1.4 805,803 - MPMX19_04439 0.48 -0.8 805,803 - MPMX19_04439 0.48 -0.1 805,803 - MPMX19_04439 0.48 +0.9 805,803 - MPMX19_04439 0.48 -1.2 805,803 - MPMX19_04439 0.48 +0.6 805,803 - MPMX19_04439 0.48 +0.6 805,803 - MPMX19_04439 0.48 -0.5 805,803 - MPMX19_04439 0.48 -2.1 805,803 - MPMX19_04439 0.48 +0.5 805,804 + MPMX19_04439 0.48 -0.5 805,804 + MPMX19_04439 0.48 +0.4 805,804 + MPMX19_04439 0.48 -0.8 805,805 - MPMX19_04439 0.48 +0.2 805,805 - MPMX19_04439 0.48 -1.4 805,871 + MPMX19_04439 0.56 -0.1 805,871 + MPMX19_04439 0.56 -0.8 805,872 - MPMX19_04439 0.56 -0.9 805,931 + MPMX19_04439 0.63 -2.0 805,931 + MPMX19_04439 0.63 +0.4 805,931 + MPMX19_04439 0.63 -0.2 805,931 + MPMX19_04439 0.63 +1.2 805,932 - MPMX19_04439 0.63 +1.0 805,932 - MPMX19_04439 0.63 +0.2
Or see this region's nucleotide sequence