Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04395 and MPMX19_04396 are separated by 121 nucleotides MPMX19_04396 and MPMX19_04397 overlap by 4 nucleotides
MPMX19_04395: MPMX19_04395 - Riboflavin transporter RibZ, at 759,786 to 761,216
_04395
MPMX19_04396: MPMX19_04396 - HTH-type transcriptional regulator HmrR, at 761,338 to 761,736
_04396
MPMX19_04397: MPMX19_04397 - Copper-exporting P-type ATPase, at 761,733 to 764,186
_04397
Position (kb) 761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 760.462 kb on + strand, within MPMX19_04395 at 760.463 kb on - strand, within MPMX19_04395 at 760.717 kb on + strand, within MPMX19_04395 at 760.717 kb on + strand, within MPMX19_04395 at 760.718 kb on - strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.750 kb on + strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.751 kb on - strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.754 kb on + strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.755 kb on - strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.897 kb on + strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.898 kb on - strand, within MPMX19_04395 at 760.969 kb on + strand, within MPMX19_04395 at 760.970 kb on - strand, within MPMX19_04395 at 761.104 kb on + strand at 761.104 kb on + strand at 761.105 kb on - strand at 761.105 kb on - strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.216 kb on + strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.217 kb on - strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.292 kb on + strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.293 kb on - strand at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.609 kb on + strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.610 kb on - strand, within MPMX19_04396 at 761.619 kb on - strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.666 kb on + strand, within MPMX19_04396 at 761.669 kb on + strand, within MPMX19_04396 at 761.670 kb on - strand, within MPMX19_04396 at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.893 kb on + strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.894 kb on - strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.932 kb on + strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand at 761.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 760,462 + MPMX19_04395 0.47 -0.7 760,463 - MPMX19_04395 0.47 -0.3 760,717 + MPMX19_04395 0.65 +1.2 760,717 + MPMX19_04395 0.65 -1.2 760,718 - MPMX19_04395 0.65 +0.1 760,750 + MPMX19_04395 0.67 -0.5 760,750 + MPMX19_04395 0.67 -0.5 760,750 + MPMX19_04395 0.67 -1.0 760,750 + MPMX19_04395 0.67 +0.2 760,750 + MPMX19_04395 0.67 +0.4 760,750 + MPMX19_04395 0.67 +1.2 760,750 + MPMX19_04395 0.67 -0.4 760,750 + MPMX19_04395 0.67 +0.6 760,751 - MPMX19_04395 0.67 +0.4 760,751 - MPMX19_04395 0.67 +0.2 760,751 - MPMX19_04395 0.67 -0.1 760,751 - MPMX19_04395 0.67 -0.9 760,751 - MPMX19_04395 0.67 -1.5 760,751 - MPMX19_04395 0.67 +0.6 760,754 + MPMX19_04395 0.68 +1.2 760,754 + MPMX19_04395 0.68 +1.8 760,754 + MPMX19_04395 0.68 -0.7 760,754 + MPMX19_04395 0.68 +0.7 760,754 + MPMX19_04395 0.68 -0.6 760,754 + MPMX19_04395 0.68 -1.7 760,754 + MPMX19_04395 0.68 +0.2 760,754 + MPMX19_04395 0.68 +0.2 760,754 + MPMX19_04395 0.68 +0.4 760,754 + MPMX19_04395 0.68 +1.0 760,754 + MPMX19_04395 0.68 +0.5 760,754 + MPMX19_04395 0.68 +0.0 760,754 + MPMX19_04395 0.68 -0.6 760,754 + MPMX19_04395 0.68 -1.3 760,754 + MPMX19_04395 0.68 -1.1 760,754 + MPMX19_04395 0.68 -1.5 760,754 + MPMX19_04395 0.68 -1.2 760,754 + MPMX19_04395 0.68 -1.4 760,754 + MPMX19_04395 0.68 -1.6 760,755 - MPMX19_04395 0.68 -1.2 760,755 - MPMX19_04395 0.68 -0.1 760,755 - MPMX19_04395 0.68 +0.4 760,755 - MPMX19_04395 0.68 +1.2 760,755 - MPMX19_04395 0.68 -0.5 760,755 - MPMX19_04395 0.68 -0.0 760,755 - MPMX19_04395 0.68 +0.4 760,755 - MPMX19_04395 0.68 -0.8 760,755 - MPMX19_04395 0.68 -0.5 760,755 - MPMX19_04395 0.68 +0.6 760,755 - MPMX19_04395 0.68 +0.7 760,755 - MPMX19_04395 0.68 +0.4 760,897 + MPMX19_04395 0.78 +1.2 760,897 + MPMX19_04395 0.78 -2.0 760,897 + MPMX19_04395 0.78 +0.6 760,897 + MPMX19_04395 0.78 +0.4 760,897 + MPMX19_04395 0.78 -0.1 760,897 + MPMX19_04395 0.78 -1.4 760,898 - MPMX19_04395 0.78 -0.4 760,898 - MPMX19_04395 0.78 +1.4 760,898 - MPMX19_04395 0.78 +0.1 760,898 - MPMX19_04395 0.78 -1.5 760,898 - MPMX19_04395 0.78 +0.7 760,969 + MPMX19_04395 0.83 -0.4 760,970 - MPMX19_04395 0.83 -1.0 761,104 + -0.4 761,104 + +0.1 761,105 - -0.0 761,105 - -0.9 761,216 + +0.8 761,216 + -1.3 761,216 + -1.1 761,216 + -0.6 761,216 + -1.5 761,216 + -1.0 761,216 + +1.7 761,216 + +0.4 761,216 + -1.4 761,216 + -1.7 761,216 + -0.1 761,216 + -0.1 761,216 + -0.1 761,216 + -1.4 761,216 + -1.0 761,216 + +0.2 761,216 + -0.2 761,216 + -0.8 761,216 + -2.3 761,217 - -1.1 761,217 - +0.3 761,217 - -0.5 761,217 - -0.6 761,217 - +0.0 761,217 - -2.0 761,217 - -0.7 761,217 - +0.3 761,217 - -0.6 761,217 - -0.1 761,217 - -0.8 761,217 - +1.0 761,217 - -2.5 761,217 - -0.3 761,217 - -1.0 761,217 - -0.4 761,217 - -1.3 761,217 - -0.3 761,217 - +0.9 761,217 - -1.5 761,292 + -0.6 761,292 + -2.1 761,292 + -1.4 761,292 + -1.2 761,292 + -0.4 761,292 + +1.0 761,293 - -0.0 761,293 - +0.8 761,293 - +1.2 761,293 - -1.3 761,293 - +0.1 761,293 - +0.1 761,293 - -0.2 761,609 + MPMX19_04396 0.68 +0.0 761,609 + MPMX19_04396 0.68 +0.2 761,609 + MPMX19_04396 0.68 -0.8 761,609 + MPMX19_04396 0.68 -0.4 761,609 + MPMX19_04396 0.68 -0.7 761,609 + MPMX19_04396 0.68 -0.4 761,610 - MPMX19_04396 0.68 -2.9 761,610 - MPMX19_04396 0.68 +0.9 761,610 - MPMX19_04396 0.68 -0.7 761,619 - MPMX19_04396 0.70 +1.4 761,666 + MPMX19_04396 0.82 -0.6 761,666 + MPMX19_04396 0.82 +0.4 761,666 + MPMX19_04396 0.82 -1.7 761,669 + MPMX19_04396 0.83 -1.0 761,670 - MPMX19_04396 0.83 -0.3 761,893 + -0.8 761,893 + -0.9 761,893 + -0.4 761,893 + -1.3 761,893 + +0.0 761,894 - +0.9 761,894 - -1.7 761,894 - -0.3 761,894 - +0.4 761,894 - +0.6 761,894 - -1.2 761,894 - +0.2 761,894 - -0.7 761,932 + -0.4 761,932 + +0.4 761,932 + -1.1 761,932 + -0.1 761,932 + +0.2 761,932 + +0.9 761,932 + +0.7 761,932 + +1.0 761,932 + +0.3 761,932 + +0.3 761,932 + -0.6 761,933 - -0.5 761,933 - +1.6 761,933 - -0.4 761,933 - +0.3 761,933 - +0.1 761,933 - +1.4 761,933 - +0.0 761,933 - -0.1 761,933 - +1.2 761,933 - -0.2 761,933 - -0.2 761,933 - -0.8 761,933 - -0.8 761,933 - +1.0
Or see this region's nucleotide sequence