Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04277 and MPMX19_04278 are separated by 3 nucleotides MPMX19_04278 and MPMX19_04279 are separated by 134 nucleotides MPMX19_04279 and MPMX19_04280 are separated by 33 nucleotides MPMX19_04280 and MPMX19_04281 are separated by 9 nucleotides
MPMX19_04277: MPMX19_04277 - Protein YhgF, at 636,760 to 639,114
_04277
MPMX19_04278: MPMX19_04278 - Threonine efflux protein, at 639,118 to 639,753
_04278
MPMX19_04279: MPMX19_04279 - hypothetical protein, at 639,888 to 640,148
_04279
MPMX19_04280: MPMX19_04280 - hypothetical protein, at 640,182 to 640,523
_04280
MPMX19_04281: MPMX19_04281 - hypothetical protein, at 640,533 to 641,420
_04281
Position (kb) 639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.158 kb on + strand, within MPMX19_04277 at 638.159 kb on - strand, within MPMX19_04277 at 638.159 kb on - strand, within MPMX19_04277 at 638.467 kb on + strand, within MPMX19_04277 at 638.467 kb on + strand, within MPMX19_04277 at 638.467 kb on + strand, within MPMX19_04277 at 638.468 kb on - strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.787 kb on + strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 638.788 kb on - strand, within MPMX19_04277 at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.260 kb on + strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.536 kb on + strand, within MPMX19_04278 at 639.536 kb on + strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.788 kb on - strand at 639.943 kb on + strand, within MPMX19_04279 at 639.943 kb on + strand, within MPMX19_04279 at 639.943 kb on + strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.156 kb on + strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.372 kb on + strand, within MPMX19_04280 at 640.372 kb on + strand, within MPMX19_04280 at 640.372 kb on + strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.402 kb on + strand, within MPMX19_04280 at 640.403 kb on - strand, within MPMX19_04280
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 638,158 + MPMX19_04277 0.59 +0.1 638,159 - MPMX19_04277 0.59 -0.6 638,159 - MPMX19_04277 0.59 -1.0 638,467 + MPMX19_04277 0.72 -1.0 638,467 + MPMX19_04277 0.72 +0.8 638,467 + MPMX19_04277 0.72 -0.1 638,468 - MPMX19_04277 0.73 -0.6 638,787 + MPMX19_04277 0.86 -0.8 638,787 + MPMX19_04277 0.86 -0.6 638,787 + MPMX19_04277 0.86 +0.2 638,787 + MPMX19_04277 0.86 +0.0 638,787 + MPMX19_04277 0.86 -0.4 638,787 + MPMX19_04277 0.86 -0.9 638,787 + MPMX19_04277 0.86 -1.1 638,787 + MPMX19_04277 0.86 -0.4 638,787 + MPMX19_04277 0.86 +0.2 638,787 + MPMX19_04277 0.86 -0.6 638,787 + MPMX19_04277 0.86 +0.2 638,787 + MPMX19_04277 0.86 -0.6 638,787 + MPMX19_04277 0.86 -0.7 638,787 + MPMX19_04277 0.86 -1.2 638,787 + MPMX19_04277 0.86 -0.6 638,787 + MPMX19_04277 0.86 -0.5 638,787 + MPMX19_04277 0.86 -2.1 638,787 + MPMX19_04277 0.86 -0.7 638,787 + MPMX19_04277 0.86 +0.2 638,787 + MPMX19_04277 0.86 +1.0 638,787 + MPMX19_04277 0.86 +1.2 638,788 - MPMX19_04277 0.86 -0.1 638,788 - MPMX19_04277 0.86 -0.7 638,788 - MPMX19_04277 0.86 +0.6 638,788 - MPMX19_04277 0.86 +0.1 638,788 - MPMX19_04277 0.86 -1.4 638,788 - MPMX19_04277 0.86 -0.6 638,788 - MPMX19_04277 0.86 -0.4 638,788 - MPMX19_04277 0.86 -0.6 638,788 - MPMX19_04277 0.86 -1.4 638,788 - MPMX19_04277 0.86 -1.0 638,788 - MPMX19_04277 0.86 -2.0 638,788 - MPMX19_04277 0.86 +0.6 638,788 - MPMX19_04277 0.86 -0.9 638,788 - MPMX19_04277 0.86 -0.4 638,788 - MPMX19_04277 0.86 +0.3 638,788 - MPMX19_04277 0.86 -0.7 638,788 - MPMX19_04277 0.86 -1.7 638,788 - MPMX19_04277 0.86 -0.3 638,788 - MPMX19_04277 0.86 -0.4 639,112 + -0.8 639,112 + -1.3 639,112 + -1.3 639,112 + -0.6 639,112 + -0.0 639,112 + -1.3 639,112 + -1.0 639,112 + -1.5 639,112 + -0.3 639,113 - +0.4 639,113 - -1.4 639,113 - +1.0 639,113 - +1.0 639,113 - -0.8 639,113 - +0.0 639,113 - +0.9 639,113 - -2.5 639,113 - -0.7 639,113 - +0.0 639,113 - -2.8 639,113 - +0.6 639,113 - -2.1 639,113 - -0.4 639,212 + MPMX19_04278 0.15 +1.2 639,212 + MPMX19_04278 0.15 -0.8 639,212 + MPMX19_04278 0.15 +0.4 639,212 + MPMX19_04278 0.15 -0.8 639,212 + MPMX19_04278 0.15 -1.0 639,213 - MPMX19_04278 0.15 +0.2 639,213 - MPMX19_04278 0.15 -1.2 639,213 - MPMX19_04278 0.15 -2.3 639,213 - MPMX19_04278 0.15 -0.4 639,213 - MPMX19_04278 0.15 -1.5 639,260 + MPMX19_04278 0.22 +0.6 639,261 - MPMX19_04278 0.22 +2.2 639,261 - MPMX19_04278 0.22 +0.2 639,261 - MPMX19_04278 0.22 -0.6 639,356 + MPMX19_04278 0.37 -0.8 639,356 + MPMX19_04278 0.37 -0.1 639,356 + MPMX19_04278 0.37 -1.7 639,356 + MPMX19_04278 0.37 -1.2 639,356 + MPMX19_04278 0.37 +0.1 639,357 - MPMX19_04278 0.38 -0.3 639,357 - MPMX19_04278 0.38 +1.5 639,357 - MPMX19_04278 0.38 +1.4 639,357 - MPMX19_04278 0.38 +0.8 639,357 - MPMX19_04278 0.38 +1.6 639,357 - MPMX19_04278 0.38 -1.4 639,357 - MPMX19_04278 0.38 +0.8 639,497 + MPMX19_04278 0.60 -0.4 639,497 + MPMX19_04278 0.60 +0.6 639,497 + MPMX19_04278 0.60 -2.1 639,498 - MPMX19_04278 0.60 -0.7 639,498 - MPMX19_04278 0.60 +0.2 639,498 - MPMX19_04278 0.60 -1.1 639,498 - MPMX19_04278 0.60 -0.5 639,498 - MPMX19_04278 0.60 +0.8 639,498 - MPMX19_04278 0.60 -0.4 639,506 + MPMX19_04278 0.61 -0.7 639,506 + MPMX19_04278 0.61 -1.4 639,506 + MPMX19_04278 0.61 -1.0 639,506 + MPMX19_04278 0.61 +1.2 639,506 + MPMX19_04278 0.61 +0.4 639,506 + MPMX19_04278 0.61 -0.1 639,506 + MPMX19_04278 0.61 -1.0 639,507 - MPMX19_04278 0.61 +0.6 639,507 - MPMX19_04278 0.61 -1.0 639,507 - MPMX19_04278 0.61 +1.0 639,507 - MPMX19_04278 0.61 -0.6 639,536 + MPMX19_04278 0.66 +0.6 639,536 + MPMX19_04278 0.66 +1.2 639,537 - MPMX19_04278 0.66 -0.8 639,537 - MPMX19_04278 0.66 +0.6 639,537 - MPMX19_04278 0.66 +1.4 639,537 - MPMX19_04278 0.66 -0.4 639,537 - MPMX19_04278 0.66 -1.9 639,537 - MPMX19_04278 0.66 +0.6 639,537 - MPMX19_04278 0.66 +1.4 639,537 - MPMX19_04278 0.66 -0.3 639,788 - -0.5 639,943 + MPMX19_04279 0.21 +0.2 639,943 + MPMX19_04279 0.21 -1.1 639,943 + MPMX19_04279 0.21 +0.2 639,944 - MPMX19_04279 0.21 -0.5 639,944 - MPMX19_04279 0.21 -0.6 639,944 - MPMX19_04279 0.21 +0.5 639,944 - MPMX19_04279 0.21 -0.1 639,944 - MPMX19_04279 0.21 +0.6 640,042 + MPMX19_04279 0.59 -0.4 640,042 + MPMX19_04279 0.59 -0.8 640,042 + MPMX19_04279 0.59 -1.0 640,042 + MPMX19_04279 0.59 +0.4 640,042 + MPMX19_04279 0.59 -0.1 640,042 + MPMX19_04279 0.59 +0.9 640,042 + MPMX19_04279 0.59 -0.8 640,042 + MPMX19_04279 0.59 +1.1 640,042 + MPMX19_04279 0.59 -1.0 640,042 + MPMX19_04279 0.59 +0.4 640,042 + MPMX19_04279 0.59 -1.4 640,042 + MPMX19_04279 0.59 +0.4 640,042 + MPMX19_04279 0.59 +1.4 640,042 + MPMX19_04279 0.59 +0.6 640,042 + MPMX19_04279 0.59 +1.4 640,042 + MPMX19_04279 0.59 -1.0 640,042 + MPMX19_04279 0.59 -1.4 640,042 + MPMX19_04279 0.59 -0.2 640,043 - MPMX19_04279 0.59 -0.5 640,043 - MPMX19_04279 0.59 -1.2 640,043 - MPMX19_04279 0.59 +0.4 640,043 - MPMX19_04279 0.59 -0.3 640,043 - MPMX19_04279 0.59 +0.3 640,043 - MPMX19_04279 0.59 -0.8 640,043 - MPMX19_04279 0.59 -0.3 640,043 - MPMX19_04279 0.59 +0.6 640,043 - MPMX19_04279 0.59 -1.0 640,043 - MPMX19_04279 0.59 +0.6 640,043 - MPMX19_04279 0.59 +0.9 640,043 - MPMX19_04279 0.59 +0.2 640,140 + +1.2 640,140 + -1.5 640,140 + +0.0 640,140 + -0.5 640,140 + +1.2 640,140 + +0.9 640,140 + -0.5 640,140 + +0.7 640,140 + +0.8 640,140 + +0.2 640,140 + -1.8 640,140 + -0.7 640,140 + +1.0 640,140 + -1.4 640,140 + -1.3 640,141 - -0.1 640,141 - +0.2 640,141 - -1.5 640,141 - -0.4 640,141 - -1.0 640,141 - -0.3 640,141 - -0.7 640,141 - +0.6 640,141 - -1.3 640,141 - -0.7 640,141 - +1.1 640,141 - -1.7 640,156 + -1.9 640,157 - -0.1 640,157 - +0.7 640,157 - -1.0 640,157 - +0.6 640,157 - -1.0 640,372 + MPMX19_04280 0.56 -1.5 640,372 + MPMX19_04280 0.56 -0.8 640,372 + MPMX19_04280 0.56 +0.1 640,373 - MPMX19_04280 0.56 -0.9 640,373 - MPMX19_04280 0.56 -0.5 640,373 - MPMX19_04280 0.56 -0.8 640,402 + MPMX19_04280 0.64 +0.3 640,403 - MPMX19_04280 0.65 +1.6
Or see this region's nucleotide sequence