Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04274

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04273 and MPMX19_04274 are separated by 466 nucleotidesMPMX19_04274 and MPMX19_04275 overlap by 4 nucleotidesMPMX19_04275 and MPMX19_04276 overlap by 4 nucleotides MPMX19_04273: MPMX19_04273 - NADH:quinone reductase, at 633,520 to 634,494 _04273 MPMX19_04274: MPMX19_04274 - RNA polymerase sigma-H factor, at 634,961 to 635,497 _04274 MPMX19_04275: MPMX19_04275 - hypothetical protein, at 635,494 to 635,922 _04275 MPMX19_04276: MPMX19_04276 - hypothetical protein, at 635,919 to 636,362 _04276 Position (kb) 634 635 636Strain fitness (log2 ratio) -2 -1 0 1 2 3at 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.492 kb on + strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.493 kb on - strandat 634.688 kb on + strandat 634.785 kb on + strandat 634.794 kb on + strandat 634.795 kb on - strandat 634.832 kb on + strandat 634.833 kb on - strandat 634.881 kb on + strandat 634.881 kb on + strandat 634.881 kb on + strandat 634.881 kb on + strandat 634.882 kb on - strandat 634.882 kb on - strandat 634.883 kb on + strandat 634.883 kb on + strandat 634.883 kb on + strandat 634.883 kb on + strandat 634.883 kb on + strandat 634.883 kb on + strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.884 kb on - strandat 634.930 kb on + strandat 634.931 kb on - strandat 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.388 kb on + strand, within MPMX19_04274at 635.518 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.903 kb on - strandat 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.982 kb on - strand, within MPMX19_04276at 636.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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634,492 + -0.6
634,492 + -0.6
634,492 + -0.2
634,492 + -1.4
634,492 + +1.8
634,492 + -0.8
634,492 + +0.2
634,492 + +1.2
634,493 - -2.3
634,493 - -1.7
634,493 - -1.3
634,493 - -0.8
634,493 - -0.6
634,493 - +0.0
634,493 - -1.1
634,493 - -0.0
634,493 - -1.4
634,493 - +0.6
634,493 - -0.6
634,493 - -1.2
634,688 + +0.2
634,785 + -0.1
634,794 + +0.2
634,795 - -0.4
634,832 + -0.7
634,833 - +0.2
634,881 + -1.3
634,881 + -1.7
634,881 + -0.5
634,881 + +0.0
634,882 - -0.1
634,882 - -0.8
634,883 + +0.5
634,883 + -1.5
634,883 + +0.6
634,883 + -0.6
634,883 + -0.9
634,883 + -0.7
634,884 - -0.1
634,884 - -2.3
634,884 - -0.8
634,884 - -1.2
634,884 - +0.3
634,884 - -0.0
634,884 - -1.3
634,884 - -0.1
634,930 + -0.4
634,931 - -0.5
635,159 + MPMX19_04274 0.37 -0.4
635,159 + MPMX19_04274 0.37 +1.0
635,159 + MPMX19_04274 0.37 +0.5
635,159 + MPMX19_04274 0.37 -1.0
635,160 - MPMX19_04274 0.37 -0.6
635,160 - MPMX19_04274 0.37 -0.1
635,160 - MPMX19_04274 0.37 -0.1
635,189 + MPMX19_04274 0.42 -0.8
635,189 + MPMX19_04274 0.42 -0.3
635,189 + MPMX19_04274 0.42 +0.2
635,189 + MPMX19_04274 0.42 +1.2
635,189 + MPMX19_04274 0.42 +3.2
635,189 + MPMX19_04274 0.42 +0.9
635,189 + MPMX19_04274 0.42 -0.6
635,189 + MPMX19_04274 0.42 -0.2
635,189 + MPMX19_04274 0.42 -0.6
635,190 - MPMX19_04274 0.43 -0.8
635,190 - MPMX19_04274 0.43 -0.0
635,190 - MPMX19_04274 0.43 +0.1
635,190 - MPMX19_04274 0.43 +1.9
635,190 - MPMX19_04274 0.43 +0.1
635,190 - MPMX19_04274 0.43 +0.6
635,351 + MPMX19_04274 0.73 -0.5
635,351 + MPMX19_04274 0.73 -0.8
635,351 + MPMX19_04274 0.73 +0.3
635,351 + MPMX19_04274 0.73 -0.8
635,351 + MPMX19_04274 0.73 -0.5
635,351 + MPMX19_04274 0.73 -0.6
635,352 - MPMX19_04274 0.73 +0.1
635,352 - MPMX19_04274 0.73 +1.6
635,352 - MPMX19_04274 0.73 +1.4
635,352 - MPMX19_04274 0.73 -1.1
635,352 - MPMX19_04274 0.73 +0.0
635,352 - MPMX19_04274 0.73 -1.4
635,352 - MPMX19_04274 0.73 -0.9
635,352 - MPMX19_04274 0.73 -0.6
635,388 + MPMX19_04274 0.80 -1.5
635,518 + -0.2
635,530 + -2.0
635,530 + +0.3
635,530 + +0.0
635,530 + -0.3
635,530 + -0.5
635,530 + +0.2
635,530 + -1.7
635,902 + -0.6
635,902 + -2.1
635,902 + -0.9
635,902 + -1.5
635,903 - -1.0
635,981 + MPMX19_04276 0.14 -1.0
635,981 + MPMX19_04276 0.14 -0.6
635,981 + MPMX19_04276 0.14 -1.7
635,981 + MPMX19_04276 0.14 -1.0
635,981 + MPMX19_04276 0.14 -0.4
635,982 - MPMX19_04276 0.14 -1.6
636,488 + -0.2

Or see this region's nucleotide sequence