Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04272 and MPMX19_04273 are separated by 412 nucleotides MPMX19_04273 and MPMX19_04274 are separated by 466 nucleotides
MPMX19_04272: MPMX19_04272 - Phytochrome-like protein cph1, at 630,891 to 633,107
_04272
MPMX19_04273: MPMX19_04273 - NADH:quinone reductase, at 633,520 to 634,494
_04273
MPMX19_04274: MPMX19_04274 - RNA polymerase sigma-H factor, at 634,961 to 635,497
_04274
MPMX19_04275: MPMX19_04275 - hypothetical protein, at 635,494 to 635,922
_04275
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 632.548 kb on + strand, within MPMX19_04272 at 632.548 kb on + strand, within MPMX19_04272 at 632.548 kb on + strand, within MPMX19_04272 at 632.614 kb on + strand, within MPMX19_04272 at 632.614 kb on + strand, within MPMX19_04272 at 632.615 kb on - strand, within MPMX19_04272 at 632.731 kb on + strand, within MPMX19_04272 at 632.731 kb on + strand, within MPMX19_04272 at 632.732 kb on - strand, within MPMX19_04272 at 633.339 kb on + strand at 633.339 kb on + strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.360 kb on - strand at 633.360 kb on - strand at 633.366 kb on + strand at 633.366 kb on + strand at 633.367 kb on - strand at 633.422 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.452 kb on - strand at 633.452 kb on - strand at 633.452 kb on - strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.533 kb on + strand at 633.534 kb on - strand at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.688 kb on + strand at 634.785 kb on + strand at 634.794 kb on + strand at 634.795 kb on - strand at 634.832 kb on + strand at 634.833 kb on - strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.882 kb on - strand at 634.882 kb on - strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.930 kb on + strand at 634.931 kb on - strand at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.388 kb on + strand, within MPMX19_04274
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 632,548 + MPMX19_04272 0.75 -0.0 632,548 + MPMX19_04272 0.75 -0.9 632,548 + MPMX19_04272 0.75 -1.0 632,614 + MPMX19_04272 0.78 +0.2 632,614 + MPMX19_04272 0.78 +0.6 632,615 - MPMX19_04272 0.78 -0.1 632,731 + MPMX19_04272 0.83 -2.3 632,731 + MPMX19_04272 0.83 -2.0 632,732 - MPMX19_04272 0.83 -1.1 633,339 + -1.5 633,339 + +0.6 633,340 - -0.6 633,340 - -0.2 633,340 - +0.6 633,340 - +0.4 633,340 - +0.1 633,340 - -0.3 633,340 - -1.3 633,340 - -0.4 633,341 + -0.8 633,341 + -1.5 633,341 + -0.6 633,341 + -1.0 633,342 - -0.9 633,342 - -0.6 633,342 - +0.8 633,342 - -1.3 633,342 - -1.0 633,342 - +0.9 633,342 - +0.2 633,350 - +3.8 633,350 - -0.6 633,350 - -1.4 633,350 - +0.2 633,350 - +0.2 633,350 - -0.8 633,354 + -1.6 633,354 + +0.5 633,354 + +1.6 633,354 + +0.2 633,354 + +0.1 633,355 - -2.6 633,355 - -0.4 633,355 - -0.6 633,355 - -0.1 633,359 + +0.1 633,359 + -1.0 633,359 + -0.8 633,359 + -0.9 633,360 - +0.2 633,360 - -1.4 633,366 + -0.1 633,366 + -1.9 633,367 - -2.3 633,422 + -0.9 633,449 + +0.2 633,449 + -1.3 633,449 + +0.2 633,449 + -0.2 633,449 + -0.1 633,449 + -0.1 633,450 - +0.4 633,450 - +0.6 633,450 - -1.5 633,450 - -0.3 633,451 + -0.6 633,451 + +0.4 633,451 + -0.3 633,451 + +0.4 633,452 - +0.4 633,452 - -1.4 633,452 - +0.0 633,459 + -0.8 633,459 + -1.0 633,459 + -0.3 633,459 + -0.5 633,459 + -0.1 633,459 + -0.4 633,459 + -0.8 633,459 + -2.3 633,459 + -0.3 633,459 + -1.1 633,459 + -1.3 633,459 + -2.0 633,460 - -1.2 633,460 - -0.5 633,460 - -1.1 633,460 - -0.8 633,460 - -0.9 633,460 - -2.0 633,460 - -1.1 633,460 - -0.8 633,460 - -3.6 633,460 - +1.9 633,460 - -0.6 633,533 + +0.9 633,534 - -0.6 633,763 + MPMX19_04273 0.25 -1.5 633,763 + MPMX19_04273 0.25 -1.0 633,763 + MPMX19_04273 0.25 -3.4 633,763 + MPMX19_04273 0.25 -1.4 633,772 + MPMX19_04273 0.26 -0.8 633,772 + MPMX19_04273 0.26 -0.5 633,772 + MPMX19_04273 0.26 +1.3 633,773 - MPMX19_04273 0.26 -1.1 633,773 - MPMX19_04273 0.26 -0.0 633,773 - MPMX19_04273 0.26 -0.5 633,773 - MPMX19_04273 0.26 +1.2 634,492 + -0.6 634,492 + -0.6 634,492 + -0.2 634,492 + -1.4 634,492 + +1.8 634,492 + -0.8 634,492 + +0.2 634,492 + +1.2 634,493 - -2.3 634,493 - -1.7 634,493 - -1.3 634,493 - -0.8 634,493 - -0.6 634,493 - +0.0 634,493 - -1.1 634,493 - -0.0 634,493 - -1.4 634,493 - +0.6 634,493 - -0.6 634,493 - -1.2 634,688 + +0.2 634,785 + -0.1 634,794 + +0.2 634,795 - -0.4 634,832 + -0.7 634,833 - +0.2 634,881 + -1.3 634,881 + -1.7 634,881 + -0.5 634,881 + +0.0 634,882 - -0.1 634,882 - -0.8 634,883 + +0.5 634,883 + -1.5 634,883 + +0.6 634,883 + -0.6 634,883 + -0.9 634,883 + -0.7 634,884 - -0.1 634,884 - -2.3 634,884 - -0.8 634,884 - -1.2 634,884 - +0.3 634,884 - -0.0 634,884 - -1.3 634,884 - -0.1 634,930 + -0.4 634,931 - -0.5 635,159 + MPMX19_04274 0.37 -0.4 635,159 + MPMX19_04274 0.37 +1.0 635,159 + MPMX19_04274 0.37 +0.5 635,159 + MPMX19_04274 0.37 -1.0 635,160 - MPMX19_04274 0.37 -0.6 635,160 - MPMX19_04274 0.37 -0.1 635,160 - MPMX19_04274 0.37 -0.1 635,189 + MPMX19_04274 0.42 -0.8 635,189 + MPMX19_04274 0.42 -0.3 635,189 + MPMX19_04274 0.42 +0.2 635,189 + MPMX19_04274 0.42 +1.2 635,189 + MPMX19_04274 0.42 +3.2 635,189 + MPMX19_04274 0.42 +0.9 635,189 + MPMX19_04274 0.42 -0.6 635,189 + MPMX19_04274 0.42 -0.2 635,189 + MPMX19_04274 0.42 -0.6 635,190 - MPMX19_04274 0.43 -0.8 635,190 - MPMX19_04274 0.43 -0.0 635,190 - MPMX19_04274 0.43 +0.1 635,190 - MPMX19_04274 0.43 +1.9 635,190 - MPMX19_04274 0.43 +0.1 635,190 - MPMX19_04274 0.43 +0.6 635,351 + MPMX19_04274 0.73 -0.5 635,351 + MPMX19_04274 0.73 -0.8 635,351 + MPMX19_04274 0.73 +0.3 635,351 + MPMX19_04274 0.73 -0.8 635,351 + MPMX19_04274 0.73 -0.5 635,351 + MPMX19_04274 0.73 -0.6 635,352 - MPMX19_04274 0.73 +0.1 635,352 - MPMX19_04274 0.73 +1.6 635,352 - MPMX19_04274 0.73 +1.4 635,352 - MPMX19_04274 0.73 -1.1 635,352 - MPMX19_04274 0.73 +0.0 635,352 - MPMX19_04274 0.73 -1.4 635,352 - MPMX19_04274 0.73 -0.9 635,352 - MPMX19_04274 0.73 -0.6 635,388 + MPMX19_04274 0.80 -1.5
Or see this region's nucleotide sequence