Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04270

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04268 and MPMX19_04269 are separated by 340 nucleotidesMPMX19_04269 and MPMX19_04270 overlap by 4 nucleotidesMPMX19_04270 and MPMX19_04271 overlap by 1 nucleotidesMPMX19_04271 and MPMX19_04272 are separated by 4 nucleotides MPMX19_04268: MPMX19_04268 - 2-keto-3-deoxygluconate permease, at 627,168 to 628,184 _04268 MPMX19_04269: MPMX19_04269 - hypothetical protein, at 628,525 to 628,893 _04269 MPMX19_04270: MPMX19_04270 - hypothetical protein, at 628,890 to 630,413 _04270 MPMX19_04271: MPMX19_04271 - Response regulator rcp1, at 630,413 to 630,886 _04271 MPMX19_04272: MPMX19_04272 - Phytochrome-like protein cph1, at 630,891 to 633,107 _04272 Position (kb) 628 629 630 631Strain fitness (log2 ratio) -2 -1 0 1at 628.157 kb on + strandat 628.158 kb on - strandat 628.300 kb on + strandat 629.073 kb on + strand, within MPMX19_04270at 629.073 kb on + strand, within MPMX19_04270at 629.073 kb on + strand, within MPMX19_04270at 629.073 kb on + strand, within MPMX19_04270at 629.073 kb on + strand, within MPMX19_04270at 629.074 kb on - strand, within MPMX19_04270at 629.233 kb on + strand, within MPMX19_04270at 629.233 kb on + strand, within MPMX19_04270at 629.233 kb on + strand, within MPMX19_04270at 629.234 kb on - strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.644 kb on + strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.645 kb on - strand, within MPMX19_04270at 629.704 kb on + strand, within MPMX19_04270at 629.704 kb on + strand, within MPMX19_04270at 629.803 kb on + strand, within MPMX19_04270at 629.803 kb on + strand, within MPMX19_04270at 629.803 kb on + strand, within MPMX19_04270at 629.803 kb on + strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 629.804 kb on - strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.049 kb on + strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.050 kb on - strand, within MPMX19_04270at 630.555 kb on + strand, within MPMX19_04271at 630.556 kb on - strand, within MPMX19_04271at 630.702 kb on + strand, within MPMX19_04271at 630.702 kb on + strand, within MPMX19_04271at 630.702 kb on + strand, within MPMX19_04271at 630.753 kb on + strand, within MPMX19_04271at 630.753 kb on + strand, within MPMX19_04271at 630.753 kb on + strand, within MPMX19_04271at 630.754 kb on - strand, within MPMX19_04271at 630.754 kb on - strand, within MPMX19_04271at 630.754 kb on - strand, within MPMX19_04271at 630.754 kb on - strand, within MPMX19_04271at 630.892 kb on + strandat 630.892 kb on + strandat 631.062 kb on + strandat 631.063 kb on - strandat 631.076 kb on + strandat 631.084 kb on + strandat 631.084 kb on + strandat 631.085 kb on - strandat 631.085 kb on - strandat 631.085 kb on - strandat 631.085 kb on - strandat 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.189 kb on + strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272at 631.190 kb on - strand, within MPMX19_04272

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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628,157 + -0.8
628,158 - -0.1
628,300 + +0.2
629,073 + MPMX19_04270 0.12 -0.4
629,073 + MPMX19_04270 0.12 -0.3
629,073 + MPMX19_04270 0.12 -0.9
629,073 + MPMX19_04270 0.12 -0.6
629,073 + MPMX19_04270 0.12 -0.4
629,074 - MPMX19_04270 0.12 -0.3
629,233 + MPMX19_04270 0.23 +0.9
629,233 + MPMX19_04270 0.23 -2.2
629,233 + MPMX19_04270 0.23 -2.0
629,234 - MPMX19_04270 0.23 -1.0
629,644 + MPMX19_04270 0.49 -0.1
629,644 + MPMX19_04270 0.49 -0.7
629,644 + MPMX19_04270 0.49 -2.2
629,644 + MPMX19_04270 0.49 -1.0
629,644 + MPMX19_04270 0.49 +0.0
629,644 + MPMX19_04270 0.49 +0.7
629,644 + MPMX19_04270 0.49 +1.0
629,644 + MPMX19_04270 0.49 -0.3
629,644 + MPMX19_04270 0.49 +0.1
629,644 + MPMX19_04270 0.49 +0.1
629,644 + MPMX19_04270 0.49 -1.6
629,644 + MPMX19_04270 0.49 -0.6
629,644 + MPMX19_04270 0.49 -0.6
629,645 - MPMX19_04270 0.50 -1.1
629,645 - MPMX19_04270 0.50 -0.3
629,645 - MPMX19_04270 0.50 +0.9
629,645 - MPMX19_04270 0.50 -0.4
629,645 - MPMX19_04270 0.50 -0.1
629,645 - MPMX19_04270 0.50 +1.2
629,645 - MPMX19_04270 0.50 -1.5
629,645 - MPMX19_04270 0.50 +0.5
629,645 - MPMX19_04270 0.50 -0.6
629,645 - MPMX19_04270 0.50 -0.1
629,645 - MPMX19_04270 0.50 +0.0
629,645 - MPMX19_04270 0.50 -0.6
629,704 + MPMX19_04270 0.53 +0.3
629,704 + MPMX19_04270 0.53 +0.0
629,803 + MPMX19_04270 0.60 -1.7
629,803 + MPMX19_04270 0.60 -0.3
629,803 + MPMX19_04270 0.60 -0.3
629,803 + MPMX19_04270 0.60 -1.4
629,804 - MPMX19_04270 0.60 -1.7
629,804 - MPMX19_04270 0.60 +0.3
629,804 - MPMX19_04270 0.60 -0.4
629,804 - MPMX19_04270 0.60 -0.7
629,804 - MPMX19_04270 0.60 -0.5
629,804 - MPMX19_04270 0.60 +0.8
629,804 - MPMX19_04270 0.60 -0.4
629,804 - MPMX19_04270 0.60 +1.1
629,804 - MPMX19_04270 0.60 +0.8
630,049 + MPMX19_04270 0.76 -1.0
630,049 + MPMX19_04270 0.76 -1.3
630,049 + MPMX19_04270 0.76 -1.0
630,049 + MPMX19_04270 0.76 -0.3
630,049 + MPMX19_04270 0.76 +0.0
630,049 + MPMX19_04270 0.76 +1.0
630,049 + MPMX19_04270 0.76 -1.9
630,049 + MPMX19_04270 0.76 -1.4
630,050 - MPMX19_04270 0.76 -0.6
630,050 - MPMX19_04270 0.76 +0.7
630,050 - MPMX19_04270 0.76 +0.2
630,050 - MPMX19_04270 0.76 +1.6
630,050 - MPMX19_04270 0.76 +0.0
630,050 - MPMX19_04270 0.76 -0.8
630,555 + MPMX19_04271 0.30 -0.7
630,556 - MPMX19_04271 0.30 +0.2
630,702 + MPMX19_04271 0.61 -0.8
630,702 + MPMX19_04271 0.61 +0.9
630,702 + MPMX19_04271 0.61 -0.0
630,753 + MPMX19_04271 0.72 -0.5
630,753 + MPMX19_04271 0.72 -0.1
630,753 + MPMX19_04271 0.72 +0.9
630,754 - MPMX19_04271 0.72 -0.1
630,754 - MPMX19_04271 0.72 +1.2
630,754 - MPMX19_04271 0.72 -0.1
630,754 - MPMX19_04271 0.72 -2.6
630,892 + +0.2
630,892 + -0.1
631,062 + -2.3
631,063 - +0.8
631,076 + +0.9
631,084 + +0.2
631,084 + +1.0
631,085 - -0.1
631,085 - -0.8
631,085 - -1.3
631,085 - -0.6
631,189 + MPMX19_04272 0.13 -0.2
631,189 + MPMX19_04272 0.13 -0.2
631,189 + MPMX19_04272 0.13 +0.5
631,189 + MPMX19_04272 0.13 -1.3
631,189 + MPMX19_04272 0.13 -0.8
631,189 + MPMX19_04272 0.13 +0.8
631,189 + MPMX19_04272 0.13 +0.2
631,189 + MPMX19_04272 0.13 +0.7
631,189 + MPMX19_04272 0.13 +1.0
631,189 + MPMX19_04272 0.13 +0.6
631,190 - MPMX19_04272 0.13 +0.9
631,190 - MPMX19_04272 0.13 +0.3
631,190 - MPMX19_04272 0.13 -0.9
631,190 - MPMX19_04272 0.13 -0.6
631,190 - MPMX19_04272 0.13 -1.4
631,190 - MPMX19_04272 0.13 -0.6
631,190 - MPMX19_04272 0.13 -0.4
631,190 - MPMX19_04272 0.13 -0.3

Or see this region's nucleotide sequence