Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04233 and MPMX19_04234 are separated by 187 nucleotides MPMX19_04234 and MPMX19_04235 are separated by 271 nucleotides
MPMX19_04233: MPMX19_04233 - hypothetical protein, at 580,306 to 581,532
_04233
MPMX19_04234: MPMX19_04234 - Disulfide-bond oxidoreductase YfcG, at 581,720 to 582,427
_04234
MPMX19_04235: MPMX19_04235 - Acryloyl-CoA reductase (NADH), at 582,699 to 583,850
_04235
Position (kb) 581
582
583 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 580.811 kb on + strand, within MPMX19_04233 at 580.811 kb on + strand, within MPMX19_04233 at 580.811 kb on + strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 580.812 kb on - strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.160 kb on + strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.161 kb on - strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.162 kb on + strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.163 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.184 kb on - strand, within MPMX19_04233 at 581.455 kb on + strand at 581.455 kb on + strand at 581.455 kb on + strand at 581.456 kb on + strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.456 kb on - strand at 581.550 kb on + strand at 581.550 kb on + strand at 581.550 kb on + strand at 581.551 kb on - strand at 581.551 kb on - strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.601 kb on - strand at 581.653 kb on + strand at 581.653 kb on + strand at 581.653 kb on + strand at 581.661 kb on + strand at 581.661 kb on + strand at 581.661 kb on + strand at 581.662 kb on - strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.663 kb on + strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.664 kb on - strand at 581.820 kb on + strand, within MPMX19_04234 at 581.910 kb on + strand, within MPMX19_04234 at 581.911 kb on - strand, within MPMX19_04234 at 581.911 kb on - strand, within MPMX19_04234 at 581.928 kb on + strand, within MPMX19_04234 at 581.929 kb on - strand, within MPMX19_04234 at 581.929 kb on - strand, within MPMX19_04234 at 582.006 kb on + strand, within MPMX19_04234 at 582.006 kb on + strand, within MPMX19_04234 at 582.007 kb on - strand, within MPMX19_04234 at 582.007 kb on - strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.030 kb on + strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.031 kb on - strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.045 kb on + strand, within MPMX19_04234 at 582.046 kb on - strand, within MPMX19_04234 at 582.046 kb on - strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.066 kb on + strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.067 kb on - strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.195 kb on + strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.196 kb on - strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.351 kb on + strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.352 kb on - strand, within MPMX19_04234 at 582.414 kb on + strand at 582.414 kb on + strand at 582.414 kb on + strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.415 kb on - strand at 582.448 kb on - strand at 582.448 kb on - strand at 582.448 kb on - strand at 582.870 kb on + strand, within MPMX19_04235 at 582.870 kb on + strand, within MPMX19_04235 at 582.871 kb on - strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.023 kb on + strand, within MPMX19_04235 at 583.024 kb on - strand, within MPMX19_04235 at 583.024 kb on - strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.161 kb on + strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235 at 583.162 kb on - strand, within MPMX19_04235
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 580,811 + MPMX19_04233 0.41 +0.2 580,811 + MPMX19_04233 0.41 +0.7 580,811 + MPMX19_04233 0.41 -0.4 580,812 - MPMX19_04233 0.41 +0.8 580,812 - MPMX19_04233 0.41 +0.0 580,812 - MPMX19_04233 0.41 -0.6 580,812 - MPMX19_04233 0.41 -0.8 581,160 + MPMX19_04233 0.70 -1.1 581,160 + MPMX19_04233 0.70 +0.4 581,160 + MPMX19_04233 0.70 -1.9 581,160 + MPMX19_04233 0.70 -1.1 581,160 + MPMX19_04233 0.70 -0.6 581,160 + MPMX19_04233 0.70 +0.4 581,161 - MPMX19_04233 0.70 -0.1 581,161 - MPMX19_04233 0.70 +1.6 581,161 - MPMX19_04233 0.70 +0.4 581,161 - MPMX19_04233 0.70 -0.6 581,161 - MPMX19_04233 0.70 -0.8 581,161 - MPMX19_04233 0.70 +0.1 581,161 - MPMX19_04233 0.70 -0.6 581,161 - MPMX19_04233 0.70 -2.2 581,161 - MPMX19_04233 0.70 +0.9 581,162 + MPMX19_04233 0.70 -0.5 581,162 + MPMX19_04233 0.70 +1.2 581,162 + MPMX19_04233 0.70 -1.4 581,162 + MPMX19_04233 0.70 -0.9 581,162 + MPMX19_04233 0.70 +1.2 581,162 + MPMX19_04233 0.70 +0.1 581,162 + MPMX19_04233 0.70 -1.1 581,163 - MPMX19_04233 0.70 -0.5 581,163 - MPMX19_04233 0.70 +0.6 581,163 - MPMX19_04233 0.70 +1.5 581,163 - MPMX19_04233 0.70 +0.1 581,163 - MPMX19_04233 0.70 +0.9 581,163 - MPMX19_04233 0.70 +0.7 581,163 - MPMX19_04233 0.70 +1.1 581,163 - MPMX19_04233 0.70 +0.1 581,163 - MPMX19_04233 0.70 -1.3 581,184 - MPMX19_04233 0.72 -0.2 581,184 - MPMX19_04233 0.72 -0.1 581,184 - MPMX19_04233 0.72 +0.6 581,184 - MPMX19_04233 0.72 -0.4 581,455 + +0.5 581,455 + -0.4 581,455 + -1.7 581,456 + -0.3 581,456 - -1.1 581,456 - -0.5 581,456 - +0.2 581,456 - -0.3 581,456 - -0.8 581,550 + +0.9 581,550 + -0.8 581,550 + -1.8 581,551 - -1.7 581,551 - -1.4 581,554 + -0.4 581,554 + +0.3 581,554 + +0.6 581,554 + -2.1 581,554 + +0.6 581,554 + +0.4 581,554 + +0.7 581,554 + -1.0 581,554 + -1.4 581,554 + -0.4 581,554 + +0.4 581,554 + -0.2 581,554 + -1.7 581,554 + -0.5 581,554 + -2.5 581,554 + -1.3 581,554 + -1.1 581,554 + -0.6 581,554 + -0.1 581,555 - +1.2 581,555 - -0.6 581,555 - +0.3 581,555 - -0.1 581,555 - -0.8 581,555 - -0.8 581,555 - -0.9 581,555 - -2.4 581,555 - -0.4 581,555 - -1.0 581,555 - -0.9 581,555 - +1.0 581,555 - -1.2 581,555 - +0.5 581,555 - -0.6 581,555 - -0.4 581,555 - -1.3 581,601 - -0.5 581,653 + -1.5 581,653 + -1.3 581,653 + -0.5 581,661 + +0.2 581,661 + -1.3 581,661 + -0.4 581,662 - +1.0 581,663 + -1.0 581,663 + +0.1 581,663 + -1.0 581,663 + -0.7 581,664 - +0.4 581,664 - +0.2 581,664 - +0.2 581,664 - -0.7 581,820 + MPMX19_04234 0.14 -0.5 581,910 + MPMX19_04234 0.27 +0.9 581,911 - MPMX19_04234 0.27 +0.2 581,911 - MPMX19_04234 0.27 +1.0 581,928 + MPMX19_04234 0.29 -0.1 581,929 - MPMX19_04234 0.30 +0.7 581,929 - MPMX19_04234 0.30 -0.7 582,006 + MPMX19_04234 0.40 -0.8 582,006 + MPMX19_04234 0.40 -1.3 582,007 - MPMX19_04234 0.41 -1.2 582,007 - MPMX19_04234 0.41 -0.6 582,030 + MPMX19_04234 0.44 -1.1 582,030 + MPMX19_04234 0.44 -1.6 582,030 + MPMX19_04234 0.44 -1.0 582,030 + MPMX19_04234 0.44 -1.0 582,030 + MPMX19_04234 0.44 -0.0 582,031 - MPMX19_04234 0.44 +0.6 582,031 - MPMX19_04234 0.44 +0.9 582,031 - MPMX19_04234 0.44 -2.6 582,045 + MPMX19_04234 0.46 -1.3 582,045 + MPMX19_04234 0.46 +0.7 582,045 + MPMX19_04234 0.46 -1.3 582,046 - MPMX19_04234 0.46 -1.6 582,046 - MPMX19_04234 0.46 -1.5 582,066 + MPMX19_04234 0.49 -0.0 582,066 + MPMX19_04234 0.49 -1.5 582,066 + MPMX19_04234 0.49 -0.5 582,066 + MPMX19_04234 0.49 +1.2 582,066 + MPMX19_04234 0.49 -1.0 582,066 + MPMX19_04234 0.49 -0.5 582,066 + MPMX19_04234 0.49 +1.2 582,067 - MPMX19_04234 0.49 -0.4 582,067 - MPMX19_04234 0.49 -0.2 582,067 - MPMX19_04234 0.49 -1.3 582,195 + MPMX19_04234 0.67 -2.6 582,195 + MPMX19_04234 0.67 -0.1 582,195 + MPMX19_04234 0.67 +0.0 582,195 + MPMX19_04234 0.67 -0.1 582,195 + MPMX19_04234 0.67 -0.6 582,195 + MPMX19_04234 0.67 +0.1 582,195 + MPMX19_04234 0.67 +0.6 582,196 - MPMX19_04234 0.67 +0.6 582,196 - MPMX19_04234 0.67 -0.6 582,196 - MPMX19_04234 0.67 -0.9 582,196 - MPMX19_04234 0.67 +1.0 582,196 - MPMX19_04234 0.67 -0.1 582,196 - MPMX19_04234 0.67 -0.5 582,196 - MPMX19_04234 0.67 +0.3 582,351 + MPMX19_04234 0.89 +1.5 582,351 + MPMX19_04234 0.89 -0.4 582,351 + MPMX19_04234 0.89 -1.3 582,352 - MPMX19_04234 0.89 -0.7 582,352 - MPMX19_04234 0.89 -1.1 582,352 - MPMX19_04234 0.89 -1.0 582,414 + +0.1 582,414 + -0.1 582,414 + +0.3 582,415 - -1.4 582,415 - -0.7 582,415 - -0.6 582,415 - -0.3 582,448 - -0.1 582,448 - -0.1 582,448 - -0.1 582,870 + MPMX19_04235 0.15 +1.0 582,870 + MPMX19_04235 0.15 -1.0 582,871 - MPMX19_04235 0.15 +0.2 583,023 + MPMX19_04235 0.28 -1.4 583,023 + MPMX19_04235 0.28 +0.0 583,023 + MPMX19_04235 0.28 +0.4 583,023 + MPMX19_04235 0.28 +0.4 583,023 + MPMX19_04235 0.28 -0.4 583,023 + MPMX19_04235 0.28 -1.5 583,023 + MPMX19_04235 0.28 -1.3 583,023 + MPMX19_04235 0.28 +0.1 583,024 - MPMX19_04235 0.28 -0.4 583,024 - MPMX19_04235 0.28 -0.4 583,161 + MPMX19_04235 0.40 -0.1 583,161 + MPMX19_04235 0.40 +0.9 583,161 + MPMX19_04235 0.40 -1.8 583,161 + MPMX19_04235 0.40 -1.1 583,161 + MPMX19_04235 0.40 +0.2 583,161 + MPMX19_04235 0.40 -0.5 583,161 + MPMX19_04235 0.40 -1.1 583,161 + MPMX19_04235 0.40 -0.1 583,161 + MPMX19_04235 0.40 -2.1 583,162 - MPMX19_04235 0.40 -0.7 583,162 - MPMX19_04235 0.40 -1.4 583,162 - MPMX19_04235 0.40 +0.5 583,162 - MPMX19_04235 0.40 -4.0 583,162 - MPMX19_04235 0.40 -0.5 583,162 - MPMX19_04235 0.40 -0.1 583,162 - MPMX19_04235 0.40 +0.4 583,162 - MPMX19_04235 0.40 -0.0 583,162 - MPMX19_04235 0.40 +1.7 583,162 - MPMX19_04235 0.40 -1.1 583,162 - MPMX19_04235 0.40 -2.5 583,162 - MPMX19_04235 0.40 -1.0 583,162 - MPMX19_04235 0.40 -1.0 583,162 - MPMX19_04235 0.40 -0.4 583,162 - MPMX19_04235 0.40 -0.4 583,162 - MPMX19_04235 0.40 +0.6
Or see this region's nucleotide sequence