Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04209 and MPMX19_04210 are separated by 75 nucleotides MPMX19_04210 and MPMX19_04211 are separated by 233 nucleotides MPMX19_04211 and MPMX19_04212 overlap by 4 nucleotides
MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912
_04209
MPMX19_04210: MPMX19_04210 - hypothetical protein, at 548,988 to 549,167
_04210
MPMX19_04211: MPMX19_04211 - hypothetical protein, at 549,401 to 550,084
_04211
MPMX19_04212: MPMX19_04212 - Photosystem I assembly protein Ycf3, at 550,081 to 553,632
_04212
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 548.038 kb on + strand, within MPMX19_04209 at 548.039 kb on - strand, within MPMX19_04209 at 548.177 kb on - strand, within MPMX19_04209 at 548.177 kb on - strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.321 kb on + strand at 548.321 kb on + strand at 548.321 kb on + strand at 548.321 kb on + strand at 548.322 kb on - strand at 548.322 kb on - strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.467 kb on - strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.533 kb on - strand at 548.533 kb on - strand at 548.937 kb on + strand at 548.944 kb on + strand at 548.944 kb on + strand at 548.944 kb on + strand at 548.945 kb on - strand at 548.945 kb on - strand at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.064 kb on - strand, within MPMX19_04210 at 549.064 kb on - strand, within MPMX19_04210 at 549.259 kb on + strand at 549.259 kb on + strand at 549.260 kb on - strand at 549.272 kb on + strand at 549.273 kb on - strand at 549.273 kb on - strand at 549.316 kb on + strand at 549.316 kb on + strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.402 kb on + strand at 549.402 kb on + strand at 549.467 kb on - strand at 549.498 kb on + strand, within MPMX19_04211 at 549.499 kb on - strand, within MPMX19_04211 at 549.499 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 550.005 kb on + strand, within MPMX19_04211 at 550.006 kb on - strand, within MPMX19_04211 at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 548,038 + MPMX19_04209 0.86 +0.6 548,039 - MPMX19_04209 0.86 +1.2 548,177 - MPMX19_04209 0.88 -0.1 548,177 - MPMX19_04209 0.88 -0.2 548,264 + MPMX19_04209 0.89 +1.2 548,264 + MPMX19_04209 0.89 +2.8 548,264 + MPMX19_04209 0.89 -0.6 548,321 + -0.4 548,321 + -1.1 548,321 + +0.8 548,321 + -0.6 548,322 - -0.6 548,322 - -0.4 548,466 + -0.8 548,466 + +0.1 548,466 + +0.2 548,466 + -0.9 548,467 - +0.7 548,532 + -1.1 548,532 + -1.3 548,532 + +0.9 548,532 + -1.3 548,533 - +0.6 548,533 - +0.2 548,937 + -1.7 548,944 + -1.8 548,944 + +0.9 548,944 + -0.1 548,945 - -2.5 548,945 - +1.0 549,063 + MPMX19_04210 0.42 -1.1 549,063 + MPMX19_04210 0.42 +0.2 549,063 + MPMX19_04210 0.42 -1.7 549,063 + MPMX19_04210 0.42 -0.1 549,064 - MPMX19_04210 0.42 -1.6 549,064 - MPMX19_04210 0.42 -1.8 549,259 + -0.4 549,259 + -0.7 549,260 - -2.0 549,272 + -0.0 549,273 - -0.4 549,273 - -1.1 549,316 + -1.3 549,316 + -2.0 549,317 - -1.6 549,317 - +0.1 549,317 - -0.4 549,317 - -1.5 549,402 + -1.1 549,402 + -1.9 549,467 - -0.6 549,498 + MPMX19_04211 0.14 -1.4 549,499 - MPMX19_04211 0.14 -1.1 549,499 - MPMX19_04211 0.14 -1.3 549,528 - MPMX19_04211 0.19 +0.9 549,528 - MPMX19_04211 0.19 +0.7 549,528 - MPMX19_04211 0.19 -2.1 549,699 + MPMX19_04211 0.44 -1.3 549,699 + MPMX19_04211 0.44 -0.4 549,699 + MPMX19_04211 0.44 +0.4 549,699 + MPMX19_04211 0.44 -1.0 549,699 + MPMX19_04211 0.44 -1.0 549,699 + MPMX19_04211 0.44 +0.9 549,699 + MPMX19_04211 0.44 +0.8 549,699 + MPMX19_04211 0.44 -0.1 549,699 + MPMX19_04211 0.44 +1.9 549,700 - MPMX19_04211 0.44 +0.1 549,700 - MPMX19_04211 0.44 -2.1 549,700 - MPMX19_04211 0.44 +1.2 549,700 - MPMX19_04211 0.44 +0.4 549,700 - MPMX19_04211 0.44 +0.3 550,005 + MPMX19_04211 0.88 +0.2 550,006 - MPMX19_04211 0.88 -0.4 550,069 + -1.1 550,069 + +0.0 550,069 + +0.2 550,069 + +0.8 550,069 + +1.2 550,069 + -1.4 550,069 + +0.3 550,070 - -0.1 550,070 - -1.1 550,070 - -2.8 550,070 - -1.3 550,070 - +0.0 550,070 - +0.9 550,070 - -0.4
Or see this region's nucleotide sequence