Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04195 and MPMX19_04196 are separated by 62 nucleotides MPMX19_04196 and MPMX19_04197 overlap by 4 nucleotides MPMX19_04197 and MPMX19_04198 are separated by 180 nucleotides
MPMX19_04195: MPMX19_04195 - Sensor histidine kinase RcsC, at 528,267 to 530,489
_04195
MPMX19_04196: MPMX19_04196 - hypothetical protein, at 530,552 to 531,847
_04196
MPMX19_04197: MPMX19_04197 - hypothetical protein, at 531,844 to 532,062
_04197
MPMX19_04198: MPMX19_04198 - hypothetical protein, at 532,243 to 533,844
_04198
Position (kb) 530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.732 kb on + strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 529.733 kb on - strand, within MPMX19_04195 at 530.085 kb on + strand, within MPMX19_04195 at 530.085 kb on + strand, within MPMX19_04195 at 530.086 kb on - strand, within MPMX19_04195 at 530.242 kb on + strand, within MPMX19_04195 at 530.242 kb on + strand, within MPMX19_04195 at 530.242 kb on + strand, within MPMX19_04195 at 530.242 kb on + strand, within MPMX19_04195 at 530.242 kb on + strand, within MPMX19_04195 at 530.243 kb on - strand, within MPMX19_04195 at 530.243 kb on - strand, within MPMX19_04195 at 530.243 kb on - strand, within MPMX19_04195 at 530.243 kb on - strand, within MPMX19_04195 at 530.492 kb on + strand at 530.493 kb on - strand at 530.493 kb on - strand at 530.520 kb on + strand at 530.520 kb on + strand at 530.521 kb on - strand at 530.521 kb on - strand at 530.521 kb on - strand at 530.521 kb on - strand at 530.521 kb on - strand at 530.691 kb on + strand, within MPMX19_04196 at 531.046 kb on + strand, within MPMX19_04196 at 531.047 kb on - strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.316 kb on + strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.317 kb on - strand, within MPMX19_04196 at 531.484 kb on - strand, within MPMX19_04196 at 531.484 kb on - strand, within MPMX19_04196 at 531.656 kb on + strand, within MPMX19_04196 at 531.657 kb on - strand, within MPMX19_04196 at 531.657 kb on - strand, within MPMX19_04196 at 531.657 kb on - strand, within MPMX19_04196 at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.766 kb on + strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.767 kb on - strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.845 kb on + strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 531.846 kb on - strand at 532.164 kb on + strand at 532.164 kb on + strand at 532.164 kb on + strand at 532.164 kb on + strand at 532.165 kb on - strand at 532.165 kb on - strand at 532.165 kb on - strand at 532.165 kb on - strand at 532.165 kb on - strand at 532.165 kb on - strand at 532.203 kb on + strand at 532.204 kb on - strand at 532.204 kb on - strand at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.483 kb on + strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.484 kb on - strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.507 kb on + strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.508 kb on - strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.552 kb on + strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.553 kb on - strand, within MPMX19_04198 at 532.642 kb on + strand, within MPMX19_04198 at 532.642 kb on + strand, within MPMX19_04198 at 532.642 kb on + strand, within MPMX19_04198 at 532.643 kb on - strand, within MPMX19_04198 at 532.645 kb on + strand, within MPMX19_04198 at 532.645 kb on + strand, within MPMX19_04198 at 532.645 kb on + strand, within MPMX19_04198 at 532.645 kb on + strand, within MPMX19_04198 at 532.646 kb on - strand, within MPMX19_04198 at 532.646 kb on - strand, within MPMX19_04198 at 532.646 kb on - strand, within MPMX19_04198
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 529,732 + MPMX19_04195 0.66 -1.1 529,732 + MPMX19_04195 0.66 -1.8 529,732 + MPMX19_04195 0.66 -1.8 529,732 + MPMX19_04195 0.66 +0.8 529,732 + MPMX19_04195 0.66 -2.0 529,732 + MPMX19_04195 0.66 -0.5 529,732 + MPMX19_04195 0.66 -0.6 529,732 + MPMX19_04195 0.66 +0.6 529,732 + MPMX19_04195 0.66 +0.8 529,732 + MPMX19_04195 0.66 -0.4 529,732 + MPMX19_04195 0.66 +0.8 529,733 - MPMX19_04195 0.66 -0.8 529,733 - MPMX19_04195 0.66 -0.4 529,733 - MPMX19_04195 0.66 +0.2 529,733 - MPMX19_04195 0.66 -0.1 529,733 - MPMX19_04195 0.66 -0.0 529,733 - MPMX19_04195 0.66 -0.9 529,733 - MPMX19_04195 0.66 -1.0 529,733 - MPMX19_04195 0.66 -1.0 529,733 - MPMX19_04195 0.66 -1.7 529,733 - MPMX19_04195 0.66 -0.7 529,733 - MPMX19_04195 0.66 -0.1 529,733 - MPMX19_04195 0.66 -0.7 529,733 - MPMX19_04195 0.66 -0.3 529,733 - MPMX19_04195 0.66 +0.2 529,733 - MPMX19_04195 0.66 -2.1 530,085 + MPMX19_04195 0.82 -0.7 530,085 + MPMX19_04195 0.82 -0.1 530,086 - MPMX19_04195 0.82 +0.0 530,242 + MPMX19_04195 0.89 -0.3 530,242 + MPMX19_04195 0.89 +0.9 530,242 + MPMX19_04195 0.89 +1.0 530,242 + MPMX19_04195 0.89 -1.6 530,242 + MPMX19_04195 0.89 -0.8 530,243 - MPMX19_04195 0.89 -0.4 530,243 - MPMX19_04195 0.89 +0.4 530,243 - MPMX19_04195 0.89 -0.4 530,243 - MPMX19_04195 0.89 +0.2 530,492 + +1.4 530,493 - -0.1 530,493 - +0.6 530,520 + -1.5 530,520 + -0.9 530,521 - +0.8 530,521 - -0.3 530,521 - +0.4 530,521 - -0.6 530,521 - +0.0 530,691 + MPMX19_04196 0.11 -0.4 531,046 + MPMX19_04196 0.38 -0.7 531,047 - MPMX19_04196 0.38 -0.5 531,316 + MPMX19_04196 0.59 -1.1 531,316 + MPMX19_04196 0.59 -0.6 531,316 + MPMX19_04196 0.59 -0.8 531,316 + MPMX19_04196 0.59 +1.3 531,316 + MPMX19_04196 0.59 -1.4 531,316 + MPMX19_04196 0.59 -0.9 531,316 + MPMX19_04196 0.59 -1.1 531,316 + MPMX19_04196 0.59 +1.3 531,316 + MPMX19_04196 0.59 -1.5 531,316 + MPMX19_04196 0.59 -1.5 531,316 + MPMX19_04196 0.59 +0.3 531,316 + MPMX19_04196 0.59 +0.4 531,316 + MPMX19_04196 0.59 -0.0 531,316 + MPMX19_04196 0.59 +1.0 531,316 + MPMX19_04196 0.59 +1.5 531,317 - MPMX19_04196 0.59 -1.3 531,317 - MPMX19_04196 0.59 -0.7 531,317 - MPMX19_04196 0.59 -0.8 531,317 - MPMX19_04196 0.59 +0.3 531,317 - MPMX19_04196 0.59 +0.6 531,317 - MPMX19_04196 0.59 +0.9 531,317 - MPMX19_04196 0.59 +0.0 531,317 - MPMX19_04196 0.59 +0.6 531,317 - MPMX19_04196 0.59 -2.1 531,317 - MPMX19_04196 0.59 +0.6 531,317 - MPMX19_04196 0.59 -0.1 531,317 - MPMX19_04196 0.59 +0.1 531,317 - MPMX19_04196 0.59 -0.4 531,317 - MPMX19_04196 0.59 -0.6 531,317 - MPMX19_04196 0.59 +0.3 531,317 - MPMX19_04196 0.59 -1.8 531,317 - MPMX19_04196 0.59 -1.8 531,484 - MPMX19_04196 0.72 +0.2 531,484 - MPMX19_04196 0.72 -1.9 531,656 + MPMX19_04196 0.85 +0.0 531,657 - MPMX19_04196 0.85 +1.0 531,657 - MPMX19_04196 0.85 +0.2 531,657 - MPMX19_04196 0.85 +1.0 531,766 + -0.6 531,766 + +0.6 531,766 + -0.0 531,766 + -1.4 531,766 + -1.5 531,766 + -0.8 531,766 + -0.5 531,766 + +0.5 531,766 + -0.9 531,766 + -0.8 531,766 + -2.1 531,766 + +1.5 531,766 + -1.0 531,766 + -0.6 531,766 + -0.4 531,766 + -1.3 531,766 + +0.3 531,766 + -0.8 531,766 + -1.5 531,766 + -0.3 531,766 + +0.5 531,766 + -0.2 531,766 + -0.1 531,766 + -0.6 531,767 - -0.4 531,767 - -0.9 531,767 - +1.9 531,767 - +0.5 531,767 - +0.6 531,767 - +1.6 531,767 - -0.8 531,767 - -0.2 531,767 - +0.9 531,767 - -0.8 531,767 - -0.7 531,767 - -1.1 531,767 - -1.0 531,845 + -0.1 531,845 + -0.7 531,845 + -0.6 531,845 + -1.7 531,845 + -1.0 531,845 + -0.4 531,845 + +0.6 531,845 + +0.1 531,845 + -1.8 531,845 + -1.4 531,845 + -0.3 531,845 + -0.2 531,845 + -0.2 531,845 + -0.2 531,845 + -0.2 531,845 + -0.3 531,845 + -1.0 531,845 + +1.6 531,845 + +0.7 531,846 - -1.4 531,846 - +0.3 531,846 - +0.1 531,846 - -0.1 531,846 - -1.4 531,846 - -2.2 531,846 - +0.0 531,846 - -0.1 531,846 - -0.6 531,846 - -0.8 531,846 - +1.4 531,846 - -0.2 531,846 - +0.6 531,846 - -1.7 531,846 - -0.3 531,846 - -2.6 531,846 - -1.5 531,846 - -1.1 532,164 + -0.0 532,164 + +0.6 532,164 + -0.8 532,164 + -1.6 532,165 - -0.1 532,165 - +1.2 532,165 - -1.0 532,165 - +0.9 532,165 - -0.6 532,165 - -1.4 532,203 + -0.6 532,204 - -0.1 532,204 - -0.3 532,483 + MPMX19_04198 0.15 +0.6 532,483 + MPMX19_04198 0.15 +0.1 532,483 + MPMX19_04198 0.15 +0.6 532,483 + MPMX19_04198 0.15 -0.9 532,483 + MPMX19_04198 0.15 -0.6 532,483 + MPMX19_04198 0.15 +1.2 532,483 + MPMX19_04198 0.15 -0.7 532,483 + MPMX19_04198 0.15 -1.1 532,484 - MPMX19_04198 0.15 +0.5 532,484 - MPMX19_04198 0.15 +0.2 532,484 - MPMX19_04198 0.15 -0.0 532,484 - MPMX19_04198 0.15 -0.1 532,484 - MPMX19_04198 0.15 +1.3 532,484 - MPMX19_04198 0.15 -1.0 532,507 + MPMX19_04198 0.16 -0.8 532,507 + MPMX19_04198 0.16 -1.0 532,507 + MPMX19_04198 0.16 -0.4 532,507 + MPMX19_04198 0.16 -0.3 532,507 + MPMX19_04198 0.16 +1.4 532,507 + MPMX19_04198 0.16 +1.2 532,507 + MPMX19_04198 0.16 +0.3 532,507 + MPMX19_04198 0.16 +0.3 532,508 - MPMX19_04198 0.17 +0.4 532,508 - MPMX19_04198 0.17 -0.1 532,508 - MPMX19_04198 0.17 -0.9 532,508 - MPMX19_04198 0.17 -0.0 532,508 - MPMX19_04198 0.17 -2.2 532,508 - MPMX19_04198 0.17 -0.1 532,508 - MPMX19_04198 0.17 -1.6 532,508 - MPMX19_04198 0.17 -0.8 532,508 - MPMX19_04198 0.17 +1.2 532,508 - MPMX19_04198 0.17 -1.3 532,552 + MPMX19_04198 0.19 +0.2 532,552 + MPMX19_04198 0.19 -0.0 532,552 + MPMX19_04198 0.19 -0.5 532,552 + MPMX19_04198 0.19 -1.1 532,552 + MPMX19_04198 0.19 +1.2 532,552 + MPMX19_04198 0.19 +1.2 532,552 + MPMX19_04198 0.19 -1.0 532,552 + MPMX19_04198 0.19 +0.2 532,552 + MPMX19_04198 0.19 -0.7 532,552 + MPMX19_04198 0.19 +0.1 532,552 + MPMX19_04198 0.19 -0.0 532,552 + MPMX19_04198 0.19 +0.9 532,553 - MPMX19_04198 0.19 +0.4 532,553 - MPMX19_04198 0.19 +0.0 532,553 - MPMX19_04198 0.19 -0.5 532,553 - MPMX19_04198 0.19 +0.2 532,553 - MPMX19_04198 0.19 +1.8 532,553 - MPMX19_04198 0.19 -2.1 532,553 - MPMX19_04198 0.19 +0.2 532,553 - MPMX19_04198 0.19 -2.0 532,642 + MPMX19_04198 0.25 +0.8 532,642 + MPMX19_04198 0.25 -0.8 532,642 + MPMX19_04198 0.25 +0.6 532,643 - MPMX19_04198 0.25 +0.6 532,645 + MPMX19_04198 0.25 -1.1 532,645 + MPMX19_04198 0.25 -0.1 532,645 + MPMX19_04198 0.25 -1.0 532,645 + MPMX19_04198 0.25 +0.4 532,646 - MPMX19_04198 0.25 +0.5 532,646 - MPMX19_04198 0.25 -0.6 532,646 - MPMX19_04198 0.25 -0.7
Or see this region's nucleotide sequence