Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04162 and MPMX19_04163 are separated by 6 nucleotides MPMX19_04163 and MPMX19_04164 are separated by 4 nucleotides
MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582
_04162
MPMX19_04163: MPMX19_04163 - hypothetical protein, at 482,589 to 483,812
_04163
MPMX19_04164: MPMX19_04164 - hypothetical protein, at 483,817 to 485,376
_04164
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.730 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.879 kb on - strand, within MPMX19_04162 at 481.879 kb on - strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.245 kb on - strand, within MPMX19_04163 at 483.245 kb on - strand, within MPMX19_04163 at 483.307 kb on + strand, within MPMX19_04163 at 483.307 kb on + strand, within MPMX19_04163 at 483.308 kb on - strand, within MPMX19_04163 at 483.308 kb on - strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.616 kb on + strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.617 kb on - strand, within MPMX19_04163 at 483.819 kb on - strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.857 kb on + strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 483.858 kb on - strand at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.763 kb on + strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.764 kb on - strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.766 kb on + strand, within MPMX19_04164 at 484.767 kb on - strand, within MPMX19_04164 at 484.767 kb on - strand, within MPMX19_04164
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 481,730 + MPMX19_04162 0.75 -1.3 481,872 + MPMX19_04162 0.79 -0.7 481,872 + MPMX19_04162 0.79 -1.3 481,872 + MPMX19_04162 0.79 -1.6 481,872 + MPMX19_04162 0.79 -1.3 481,872 + MPMX19_04162 0.79 +2.2 481,872 + MPMX19_04162 0.79 -0.7 481,872 + MPMX19_04162 0.79 -0.5 481,872 + MPMX19_04162 0.79 +0.6 481,873 - MPMX19_04162 0.79 -1.3 481,873 - MPMX19_04162 0.79 +0.0 481,873 - MPMX19_04162 0.79 -0.4 481,873 - MPMX19_04162 0.79 -0.4 481,873 - MPMX19_04162 0.79 -1.7 481,873 - MPMX19_04162 0.79 -2.0 481,873 - MPMX19_04162 0.79 +0.2 481,873 - MPMX19_04162 0.79 +1.4 481,873 - MPMX19_04162 0.79 +0.6 481,873 - MPMX19_04162 0.79 +0.0 481,878 + MPMX19_04162 0.79 -1.2 481,878 + MPMX19_04162 0.79 -1.5 481,878 + MPMX19_04162 0.79 +0.8 481,878 + MPMX19_04162 0.79 -0.9 481,879 - MPMX19_04162 0.79 -1.0 481,879 - MPMX19_04162 0.79 +0.3 482,064 + MPMX19_04162 0.85 +0.3 482,064 + MPMX19_04162 0.85 +0.2 482,064 + MPMX19_04162 0.85 -0.5 482,065 - MPMX19_04162 0.85 -2.1 482,065 - MPMX19_04162 0.85 +1.2 482,065 - MPMX19_04162 0.85 -0.7 482,065 - MPMX19_04162 0.85 +0.6 482,169 + MPMX19_04162 0.88 -1.2 482,169 + MPMX19_04162 0.88 +0.8 482,169 + MPMX19_04162 0.88 -2.0 482,169 + MPMX19_04162 0.88 -0.7 482,169 + MPMX19_04162 0.88 -0.2 482,169 + MPMX19_04162 0.88 -0.8 482,169 + MPMX19_04162 0.88 +0.6 482,169 + MPMX19_04162 0.88 +0.6 482,169 + MPMX19_04162 0.88 -0.4 482,169 + MPMX19_04162 0.88 -1.2 482,169 + MPMX19_04162 0.88 -0.2 482,169 + MPMX19_04162 0.88 -1.5 482,170 - MPMX19_04162 0.88 -1.3 482,170 - MPMX19_04162 0.88 -1.0 482,170 - MPMX19_04162 0.88 +0.7 482,170 - MPMX19_04162 0.88 -1.4 482,170 - MPMX19_04162 0.88 -1.8 482,170 - MPMX19_04162 0.88 -0.7 482,170 - MPMX19_04162 0.88 -1.1 482,170 - MPMX19_04162 0.88 -1.3 482,170 - MPMX19_04162 0.88 -0.8 482,170 - MPMX19_04162 0.88 -1.5 482,170 - MPMX19_04162 0.88 -0.6 482,580 + +1.2 482,580 + +0.7 482,580 + +0.3 482,580 + -1.9 482,580 + -0.9 482,581 - +0.2 482,581 - +0.2 482,581 - -0.0 482,581 - -0.2 482,581 - -1.4 482,581 - -0.5 483,244 + MPMX19_04163 0.54 -0.7 483,244 + MPMX19_04163 0.54 +0.2 483,244 + MPMX19_04163 0.54 -0.2 483,244 + MPMX19_04163 0.54 +1.2 483,244 + MPMX19_04163 0.54 -0.8 483,245 - MPMX19_04163 0.54 -2.5 483,245 - MPMX19_04163 0.54 -0.8 483,307 + MPMX19_04163 0.59 -0.3 483,307 + MPMX19_04163 0.59 -0.7 483,308 - MPMX19_04163 0.59 +0.6 483,308 - MPMX19_04163 0.59 -0.0 483,355 + MPMX19_04163 0.63 -0.7 483,355 + MPMX19_04163 0.63 -1.3 483,355 + MPMX19_04163 0.63 -0.5 483,355 + MPMX19_04163 0.63 +2.2 483,355 + MPMX19_04163 0.63 +1.2 483,355 + MPMX19_04163 0.63 +0.2 483,355 + MPMX19_04163 0.63 -1.2 483,355 + MPMX19_04163 0.63 -1.2 483,355 + MPMX19_04163 0.63 -0.5 483,355 + MPMX19_04163 0.63 -0.8 483,355 + MPMX19_04163 0.63 -1.0 483,355 + MPMX19_04163 0.63 +0.0 483,356 - MPMX19_04163 0.63 -1.3 483,356 - MPMX19_04163 0.63 -0.4 483,356 - MPMX19_04163 0.63 -1.8 483,356 - MPMX19_04163 0.63 -0.8 483,356 - MPMX19_04163 0.63 +0.6 483,356 - MPMX19_04163 0.63 -1.5 483,356 - MPMX19_04163 0.63 +0.2 483,356 - MPMX19_04163 0.63 -1.9 483,356 - MPMX19_04163 0.63 -0.6 483,616 + MPMX19_04163 0.84 -1.0 483,616 + MPMX19_04163 0.84 -0.4 483,616 + MPMX19_04163 0.84 -0.8 483,616 + MPMX19_04163 0.84 -0.9 483,616 + MPMX19_04163 0.84 -0.2 483,616 + MPMX19_04163 0.84 -2.3 483,616 + MPMX19_04163 0.84 -0.3 483,616 + MPMX19_04163 0.84 -2.4 483,617 - MPMX19_04163 0.84 -0.3 483,617 - MPMX19_04163 0.84 -0.4 483,617 - MPMX19_04163 0.84 -1.8 483,617 - MPMX19_04163 0.84 +0.8 483,617 - MPMX19_04163 0.84 -1.1 483,617 - MPMX19_04163 0.84 -1.7 483,617 - MPMX19_04163 0.84 -0.2 483,819 - -1.5 483,857 + -0.3 483,857 + +0.4 483,857 + -1.7 483,857 + -1.0 483,857 + +0.2 483,857 + -0.8 483,857 + -0.5 483,857 + -0.8 483,857 + -1.1 483,857 + +0.6 483,857 + -0.6 483,857 + -0.5 483,857 + -1.0 483,857 + -0.4 483,857 + -0.7 483,857 + -1.1 483,857 + +0.8 483,857 + +1.3 483,858 - -0.0 483,858 - +0.3 483,858 - -1.2 483,858 - -0.2 483,858 - +1.0 483,858 - -0.3 483,858 - -0.7 483,858 - -1.8 483,858 - -1.0 483,858 - -1.7 483,858 - -0.6 483,858 - -1.4 483,858 - -0.7 483,858 - -1.7 483,858 - -1.4 483,858 - -0.2 483,858 - -0.1 483,858 - -0.3 483,858 - -0.3 484,763 + MPMX19_04164 0.61 -1.1 484,763 + MPMX19_04164 0.61 -0.4 484,763 + MPMX19_04164 0.61 +0.4 484,763 + MPMX19_04164 0.61 -0.4 484,763 + MPMX19_04164 0.61 +0.2 484,763 + MPMX19_04164 0.61 -0.4 484,763 + MPMX19_04164 0.61 -2.2 484,763 + MPMX19_04164 0.61 -1.3 484,763 + MPMX19_04164 0.61 +0.6 484,763 + MPMX19_04164 0.61 +0.3 484,763 + MPMX19_04164 0.61 -0.2 484,763 + MPMX19_04164 0.61 -0.5 484,763 + MPMX19_04164 0.61 +0.2 484,763 + MPMX19_04164 0.61 -3.2 484,763 + MPMX19_04164 0.61 -1.1 484,763 + MPMX19_04164 0.61 -0.5 484,763 + MPMX19_04164 0.61 -0.2 484,763 + MPMX19_04164 0.61 -0.9 484,763 + MPMX19_04164 0.61 -0.1 484,764 - MPMX19_04164 0.61 +1.0 484,764 - MPMX19_04164 0.61 -1.3 484,764 - MPMX19_04164 0.61 +0.3 484,764 - MPMX19_04164 0.61 -0.5 484,764 - MPMX19_04164 0.61 -0.9 484,764 - MPMX19_04164 0.61 -0.8 484,764 - MPMX19_04164 0.61 -0.2 484,764 - MPMX19_04164 0.61 -0.5 484,764 - MPMX19_04164 0.61 +0.3 484,764 - MPMX19_04164 0.61 -0.9 484,764 - MPMX19_04164 0.61 -1.2 484,764 - MPMX19_04164 0.61 +0.2 484,764 - MPMX19_04164 0.61 +0.8 484,764 - MPMX19_04164 0.61 -1.4 484,766 + MPMX19_04164 0.61 +0.2 484,766 + MPMX19_04164 0.61 -0.3 484,766 + MPMX19_04164 0.61 -0.0 484,766 + MPMX19_04164 0.61 +0.3 484,766 + MPMX19_04164 0.61 -1.7 484,766 + MPMX19_04164 0.61 -0.4 484,767 - MPMX19_04164 0.61 -0.7 484,767 - MPMX19_04164 0.61 -1.1
Or see this region's nucleotide sequence