Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04125

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04124 and MPMX19_04125 are separated by 135 nucleotidesMPMX19_04125 and MPMX19_04126 are separated by 126 nucleotidesMPMX19_04126 and MPMX19_04127 are separated by 19 nucleotides MPMX19_04124: MPMX19_04124 - hypothetical protein, at 434,461 to 435,942 _04124 MPMX19_04125: MPMX19_04125 - hypothetical protein, at 436,078 to 436,569 _04125 MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424 _04126 MPMX19_04127: MPMX19_04127 - hypothetical protein, at 437,444 to 437,938 _04127 Position (kb) 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 435.162 kb on - strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.174 kb on - strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.653 kb on + strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 436.120 kb on + strandat 436.120 kb on + strandat 436.121 kb on - strandat 436.121 kb on - strandat 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.377 kb on + strand, within MPMX19_04125at 436.378 kb on - strand, within MPMX19_04125at 436.588 kb on - strandat 436.602 kb on + strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.604 kb on + strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.675 kb on + strandat 436.675 kb on + strandat 436.676 kb on - strandat 436.676 kb on - strandat 436.677 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 437.333 kb on + strand, within MPMX19_04126

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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435,162 - MPMX19_04124 0.47 +2.6
435,173 + MPMX19_04124 0.48 +1.9
435,173 + MPMX19_04124 0.48 -1.0
435,173 + MPMX19_04124 0.48 -1.6
435,174 - MPMX19_04124 0.48 -0.2
435,347 + MPMX19_04124 0.60 -0.2
435,347 + MPMX19_04124 0.60 +0.8
435,347 + MPMX19_04124 0.60 -0.1
435,347 + MPMX19_04124 0.60 +0.8
435,347 + MPMX19_04124 0.60 +0.8
435,347 + MPMX19_04124 0.60 -1.0
435,347 + MPMX19_04124 0.60 -0.0
435,347 + MPMX19_04124 0.60 -0.6
435,347 + MPMX19_04124 0.60 -0.2
435,347 + MPMX19_04124 0.60 -0.8
435,347 + MPMX19_04124 0.60 -0.4
435,348 - MPMX19_04124 0.60 -0.6
435,348 - MPMX19_04124 0.60 -0.8
435,348 - MPMX19_04124 0.60 +0.6
435,348 - MPMX19_04124 0.60 +0.2
435,348 - MPMX19_04124 0.60 -1.7
435,348 - MPMX19_04124 0.60 +1.2
435,348 - MPMX19_04124 0.60 +0.4
435,348 - MPMX19_04124 0.60 +0.5
435,348 - MPMX19_04124 0.60 +1.0
435,348 - MPMX19_04124 0.60 -1.0
435,653 + MPMX19_04124 0.80 -1.5
435,654 - MPMX19_04124 0.80 -1.4
435,654 - MPMX19_04124 0.80 -0.2
435,654 - MPMX19_04124 0.80 -0.6
435,654 - MPMX19_04124 0.80 -2.0
435,654 - MPMX19_04124 0.80 -0.4
436,120 + -1.4
436,120 + -1.0
436,121 - -0.9
436,121 - -0.2
436,172 + MPMX19_04125 0.19 -0.2
436,172 + MPMX19_04125 0.19 -0.8
436,172 + MPMX19_04125 0.19 +0.1
436,172 + MPMX19_04125 0.19 +0.1
436,172 + MPMX19_04125 0.19 +0.7
436,172 + MPMX19_04125 0.19 -0.1
436,172 + MPMX19_04125 0.19 -0.1
436,172 + MPMX19_04125 0.19 -0.2
436,173 - MPMX19_04125 0.19 +0.3
436,173 - MPMX19_04125 0.19 +0.0
436,173 - MPMX19_04125 0.19 +0.2
436,173 - MPMX19_04125 0.19 -0.3
436,173 - MPMX19_04125 0.19 +0.6
436,173 - MPMX19_04125 0.19 +0.2
436,173 - MPMX19_04125 0.19 -0.2
436,173 - MPMX19_04125 0.19 -1.0
436,173 - MPMX19_04125 0.19 +0.1
436,173 - MPMX19_04125 0.19 -1.7
436,377 + MPMX19_04125 0.61 -0.6
436,378 - MPMX19_04125 0.61 +1.0
436,588 - -1.7
436,602 + -1.2
436,603 - +0.9
436,603 - +0.4
436,603 - -1.6
436,604 + -1.0
436,605 - -0.4
436,605 - -0.0
436,605 - -0.4
436,675 + -1.5
436,675 + +2.2
436,676 - +0.8
436,676 - +0.7
436,677 + -0.5
436,757 + -1.1
436,757 + +0.2
436,757 + -0.2
436,757 + -0.6
436,758 - -0.5
436,758 - -0.2
436,758 - -0.3
436,758 - -1.4
436,758 - +0.0
436,967 + MPMX19_04126 0.37 +0.0
436,967 + MPMX19_04126 0.37 +0.9
436,967 + MPMX19_04126 0.37 +0.2
436,967 + MPMX19_04126 0.37 -0.2
436,967 + MPMX19_04126 0.37 -1.9
436,968 - MPMX19_04126 0.37 -0.8
436,968 - MPMX19_04126 0.37 +0.2
436,968 - MPMX19_04126 0.37 +0.6
436,968 - MPMX19_04126 0.37 -0.6
436,968 - MPMX19_04126 0.37 -0.6
436,968 - MPMX19_04126 0.37 -0.6
436,968 - MPMX19_04126 0.37 -1.4
436,968 - MPMX19_04126 0.37 -0.4
436,968 - MPMX19_04126 0.37 -0.4
436,985 + MPMX19_04126 0.40 -0.8
436,985 + MPMX19_04126 0.40 -0.5
436,985 + MPMX19_04126 0.40 -0.5
436,985 + MPMX19_04126 0.40 -1.9
436,985 + MPMX19_04126 0.40 -0.8
436,985 + MPMX19_04126 0.40 -1.3
436,985 + MPMX19_04126 0.40 -0.2
436,985 + MPMX19_04126 0.40 -0.5
436,985 + MPMX19_04126 0.40 +0.6
436,985 + MPMX19_04126 0.40 -0.0
436,985 + MPMX19_04126 0.40 -0.4
436,985 + MPMX19_04126 0.40 -0.4
436,985 + MPMX19_04126 0.40 -1.2
436,985 + MPMX19_04126 0.40 +1.0
436,985 + MPMX19_04126 0.40 +0.2
436,985 + MPMX19_04126 0.40 -0.6
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 -1.0
436,985 + MPMX19_04126 0.40 -1.3
436,985 + MPMX19_04126 0.40 +1.4
436,985 + MPMX19_04126 0.40 -0.3
436,985 + MPMX19_04126 0.40 -0.6
436,985 + MPMX19_04126 0.40 -0.6
436,985 + MPMX19_04126 0.40 +0.4
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 +0.2
436,985 + MPMX19_04126 0.40 -0.2
436,985 + MPMX19_04126 0.40 +0.0
436,985 + MPMX19_04126 0.40 +0.6
436,985 + MPMX19_04126 0.40 +0.6
436,986 - MPMX19_04126 0.40 +0.5
436,986 - MPMX19_04126 0.40 -0.7
436,986 - MPMX19_04126 0.40 -0.2
436,986 - MPMX19_04126 0.40 -0.6
436,986 - MPMX19_04126 0.40 -0.2
436,986 - MPMX19_04126 0.40 -0.9
436,986 - MPMX19_04126 0.40 -0.6
436,986 - MPMX19_04126 0.40 -0.2
436,986 - MPMX19_04126 0.40 -0.1
436,986 - MPMX19_04126 0.40 -0.2
436,986 - MPMX19_04126 0.40 -0.4
436,986 - MPMX19_04126 0.40 -0.8
436,986 - MPMX19_04126 0.40 +0.3
436,986 - MPMX19_04126 0.40 -1.2
436,986 - MPMX19_04126 0.40 -0.7
436,986 - MPMX19_04126 0.40 -0.5
436,986 - MPMX19_04126 0.40 +0.8
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 +0.4
436,986 - MPMX19_04126 0.40 -0.8
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 +0.3
436,986 - MPMX19_04126 0.40 -1.9
436,986 - MPMX19_04126 0.40 -1.0
436,986 - MPMX19_04126 0.40 -0.8
436,986 - MPMX19_04126 0.40 -1.0
436,986 - MPMX19_04126 0.40 +0.3
436,986 - MPMX19_04126 0.40 -0.4
437,333 + MPMX19_04126 0.87 -0.6

Or see this region's nucleotide sequence