Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04115 and MPMX19_04116 overlap by 4 nucleotides MPMX19_04116 and MPMX19_04117 overlap by 4 nucleotides MPMX19_04117 and MPMX19_04118 are separated by 95 nucleotides
MPMX19_04115: MPMX19_04115 - Sensor histidine kinase RcsC, at 422,789 to 425,038
_04115
MPMX19_04116: MPMX19_04116 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 425,035 to 426,210
_04116
MPMX19_04117: MPMX19_04117 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 426,207 to 426,974
_04117
MPMX19_04118: MPMX19_04118 - Sensor histidine kinase RcsC, at 427,070 to 428,731
_04118
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 424.681 kb on + strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 425.416 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.975 kb on - strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.061 kb on + strand, within MPMX19_04116 at 426.068 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.922 kb on - strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.984 kb on - strand at 427.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 424,681 + MPMX19_04115 0.84 +0.6 424,682 - MPMX19_04115 0.84 -1.8 424,682 - MPMX19_04115 0.84 -2.5 424,976 + -0.4 424,976 + -1.0 424,976 + -0.5 424,976 + -0.3 424,977 - -1.4 424,977 - -1.3 424,977 - -0.0 424,977 - -0.2 425,416 + MPMX19_04116 0.32 -0.8 425,745 + MPMX19_04116 0.60 +0.1 425,745 + MPMX19_04116 0.60 +0.0 425,745 + MPMX19_04116 0.60 -1.3 425,745 + MPMX19_04116 0.60 -0.7 425,746 - MPMX19_04116 0.60 -0.9 425,746 - MPMX19_04116 0.60 -0.4 425,746 - MPMX19_04116 0.60 +1.2 425,746 - MPMX19_04116 0.60 +1.0 425,746 - MPMX19_04116 0.60 -1.8 425,851 + MPMX19_04116 0.69 +0.3 425,851 + MPMX19_04116 0.69 -1.0 425,851 + MPMX19_04116 0.69 -0.2 425,851 + MPMX19_04116 0.69 -1.0 425,851 + MPMX19_04116 0.69 +0.6 425,851 + MPMX19_04116 0.69 -0.5 425,851 + MPMX19_04116 0.69 -1.8 425,851 + MPMX19_04116 0.69 +0.1 425,851 + MPMX19_04116 0.69 +0.6 425,852 - MPMX19_04116 0.69 -0.8 425,852 - MPMX19_04116 0.69 -1.4 425,852 - MPMX19_04116 0.69 -0.7 425,852 - MPMX19_04116 0.69 -0.5 425,852 - MPMX19_04116 0.69 -1.3 425,852 - MPMX19_04116 0.69 -0.8 425,852 - MPMX19_04116 0.69 -0.8 425,852 - MPMX19_04116 0.69 -0.2 425,975 - MPMX19_04116 0.80 -0.6 426,061 + MPMX19_04116 0.87 -0.4 426,061 + MPMX19_04116 0.87 +0.6 426,061 + MPMX19_04116 0.87 +0.0 426,061 + MPMX19_04116 0.87 +1.9 426,061 + MPMX19_04116 0.87 -0.2 426,061 + MPMX19_04116 0.87 -0.8 426,068 + MPMX19_04116 0.88 -0.6 426,084 + MPMX19_04116 0.89 -1.9 426,084 + MPMX19_04116 0.89 -0.1 426,084 + MPMX19_04116 0.89 +0.4 426,922 - -0.2 426,972 + -1.0 426,972 + -0.2 426,972 + +0.2 426,972 + -0.1 426,973 - -0.6 426,973 - +0.8 426,973 - -0.2 426,973 - +0.2 426,984 - +0.4 427,023 - -1.2
Or see this region's nucleotide sequence