Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04110

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04108 and MPMX19_04109 are separated by 10 nucleotidesMPMX19_04109 and MPMX19_04110 are separated by 72 nucleotidesMPMX19_04110 and MPMX19_04111 are separated by 271 nucleotidesMPMX19_04111 and MPMX19_04112 overlap by 4 nucleotides MPMX19_04108: MPMX19_04108 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 415,759 to 416,670 _04108 MPMX19_04109: MPMX19_04109 - hypothetical protein, at 416,681 to 417,502 _04109 MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042 _04110 MPMX19_04111: MPMX19_04111 - hypothetical protein, at 418,314 to 418,877 _04111 MPMX19_04112: MPMX19_04112 - hypothetical protein, at 418,874 to 420,349 _04112 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1at 416.742 kb on + strandat 416.742 kb on + strandat 416.742 kb on + strandat 416.743 kb on - strandat 416.743 kb on - strandat 416.799 kb on + strand, within MPMX19_04109at 416.800 kb on - strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.896 kb on - strand, within MPMX19_04109at 417.130 kb on - strand, within MPMX19_04109at 417.130 kb on - strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.361 kb on + strand, within MPMX19_04109at 417.445 kb on + strandat 417.446 kb on - strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 418.132 kb on + strandat 418.132 kb on + strandat 418.133 kb on - strandat 418.133 kb on - strandat 418.209 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.551 kb on + strand, within MPMX19_04111at 418.551 kb on + strand, within MPMX19_04111at 418.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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416,742 + -0.4
416,742 + +1.2
416,742 + -1.1
416,743 - -0.8
416,743 - -1.0
416,799 + MPMX19_04109 0.14 -0.8
416,800 - MPMX19_04109 0.14 -1.0
416,817 + MPMX19_04109 0.17 -0.6
416,817 + MPMX19_04109 0.17 -0.4
416,817 + MPMX19_04109 0.17 +0.4
416,817 + MPMX19_04109 0.17 -0.9
416,818 - MPMX19_04109 0.17 -1.0
416,818 - MPMX19_04109 0.17 -1.0
416,818 - MPMX19_04109 0.17 +0.3
416,818 - MPMX19_04109 0.17 -1.4
416,818 - MPMX19_04109 0.17 -0.2
416,896 - MPMX19_04109 0.26 -0.9
417,130 - MPMX19_04109 0.55 -2.4
417,130 - MPMX19_04109 0.55 -1.0
417,237 + MPMX19_04109 0.68 +0.2
417,237 + MPMX19_04109 0.68 -3.3
417,237 + MPMX19_04109 0.68 -1.4
417,237 + MPMX19_04109 0.68 -2.4
417,237 + MPMX19_04109 0.68 -1.5
417,237 + MPMX19_04109 0.68 -0.6
417,237 + MPMX19_04109 0.68 -0.2
417,237 + MPMX19_04109 0.68 +0.5
417,237 + MPMX19_04109 0.68 +1.2
417,237 + MPMX19_04109 0.68 +1.2
417,237 + MPMX19_04109 0.68 -0.1
417,237 + MPMX19_04109 0.68 -1.9
417,237 + MPMX19_04109 0.68 -0.6
417,237 + MPMX19_04109 0.68 -1.2
417,238 - MPMX19_04109 0.68 -1.6
417,238 - MPMX19_04109 0.68 +0.6
417,238 - MPMX19_04109 0.68 -1.7
417,238 - MPMX19_04109 0.68 +0.6
417,238 - MPMX19_04109 0.68 -0.9
417,238 - MPMX19_04109 0.68 +0.4
417,238 - MPMX19_04109 0.68 -1.7
417,238 - MPMX19_04109 0.68 +0.4
417,238 - MPMX19_04109 0.68 -0.2
417,361 + MPMX19_04109 0.83 +1.2
417,445 + +0.4
417,446 - -2.3
417,538 + +0.9
417,538 + +0.1
417,538 + +0.5
417,538 + +1.6
417,539 - -0.6
417,539 - +0.6
417,539 - -0.0
417,539 - +1.6
417,539 - -0.2
417,539 - -0.2
417,672 + MPMX19_04110 0.21 -0.2
417,672 + MPMX19_04110 0.21 +0.8
417,672 + MPMX19_04110 0.21 +0.7
417,672 + MPMX19_04110 0.21 -0.5
417,672 + MPMX19_04110 0.21 -0.3
417,673 - MPMX19_04110 0.21 -0.6
417,673 - MPMX19_04110 0.21 -0.4
417,673 - MPMX19_04110 0.21 -0.4
417,673 - MPMX19_04110 0.21 -0.2
417,673 - MPMX19_04110 0.21 -0.3
417,673 - MPMX19_04110 0.21 +0.6
417,673 - MPMX19_04110 0.21 -1.0
417,673 - MPMX19_04110 0.21 +0.4
417,673 - MPMX19_04110 0.21 +0.3
418,132 + +1.2
418,132 + -1.3
418,133 - +0.3
418,133 - -1.2
418,209 + -1.8
418,295 + +0.1
418,295 + -0.5
418,295 + -0.6
418,295 + +0.4
418,295 + -0.2
418,295 + -1.5
418,295 + +0.4
418,295 + -0.6
418,295 + -2.0
418,295 + -0.9
418,295 + -0.6
418,295 + -3.3
418,295 + -0.6
418,551 + MPMX19_04111 0.42 -2.1
418,551 + MPMX19_04111 0.42 -1.6
418,970 + +0.2

Or see this region's nucleotide sequence