Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04095 and MPMX19_04096 are separated by 30 nucleotides MPMX19_04096 and MPMX19_04097 are separated by 194 nucleotides
MPMX19_04095: MPMX19_04095 - hypothetical protein, at 400,820 to 401,341
_04095
MPMX19_04096: MPMX19_04096 - hypothetical protein, at 401,372 to 401,980
_04096
MPMX19_04097: MPMX19_04097 - IS5 family transposase ISAzs10, at 402,175 to 403,251
_04097
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.471 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.599 kb on + strand at 400.600 kb on - strand at 400.777 kb on + strand at 400.777 kb on + strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 401.168 kb on + strand, within MPMX19_04095 at 401.169 kb on - strand, within MPMX19_04095 at 401.169 kb on - strand, within MPMX19_04095 at 401.394 kb on + strand at 401.703 kb on + strand, within MPMX19_04096 at 401.703 kb on + strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.710 kb on - strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.995 kb on + strand at 401.995 kb on + strand at 401.995 kb on + strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 402.042 kb on + strand at 402.042 kb on + strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 400,471 + -0.4 400,496 + +0.1 400,496 + -1.0 400,496 + -1.0 400,496 + -2.0 400,496 + -0.5 400,496 + -0.6 400,496 + -0.6 400,497 - +0.9 400,497 - -0.7 400,497 - -1.5 400,599 + -1.7 400,600 - -2.6 400,777 + -1.5 400,777 + +0.2 400,778 - -0.7 400,778 - -0.8 400,778 - +2.2 400,797 + +0.4 400,797 + -0.5 400,797 + -1.2 400,798 - -0.2 400,798 - -0.3 400,798 - +2.2 400,819 + -0.3 400,819 + -1.2 400,819 + -1.2 400,819 + -0.7 400,819 + +0.1 400,819 + -1.3 400,819 + -0.5 400,820 - +0.6 400,820 - -0.1 400,820 - +1.6 400,820 - +1.4 400,820 - -0.9 400,820 - -0.6 400,820 - +0.4 400,820 - -0.9 400,820 - -0.8 400,820 - +1.2 400,820 - -1.9 400,820 - +0.1 400,820 - +1.2 400,820 - -1.0 400,970 + MPMX19_04095 0.29 +0.6 400,970 + MPMX19_04095 0.29 -1.0 400,970 + MPMX19_04095 0.29 -0.1 400,970 + MPMX19_04095 0.29 -0.2 400,970 + MPMX19_04095 0.29 -0.8 400,970 + MPMX19_04095 0.29 +0.8 400,971 - MPMX19_04095 0.29 -0.5 400,971 - MPMX19_04095 0.29 +2.4 400,971 - MPMX19_04095 0.29 -0.1 401,168 + MPMX19_04095 0.67 +0.7 401,169 - MPMX19_04095 0.67 -1.0 401,169 - MPMX19_04095 0.67 +0.4 401,394 + +0.6 401,703 + MPMX19_04096 0.54 +0.6 401,703 + MPMX19_04096 0.54 +2.2 401,704 - MPMX19_04096 0.55 -1.4 401,704 - MPMX19_04096 0.55 -0.0 401,709 + MPMX19_04096 0.55 -0.3 401,709 + MPMX19_04096 0.55 -1.9 401,710 - MPMX19_04096 0.56 -1.2 401,796 + MPMX19_04096 0.70 -0.1 401,796 + MPMX19_04096 0.70 +0.2 401,796 + MPMX19_04096 0.70 +0.3 401,796 + MPMX19_04096 0.70 +0.6 401,797 - MPMX19_04096 0.70 +0.8 401,797 - MPMX19_04096 0.70 -0.8 401,797 - MPMX19_04096 0.70 -1.3 401,797 - MPMX19_04096 0.70 -0.7 401,797 - MPMX19_04096 0.70 +1.8 401,797 - MPMX19_04096 0.70 -0.3 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 +1.4 401,874 + MPMX19_04096 0.82 +0.2 401,874 + MPMX19_04096 0.82 -0.8 401,874 + MPMX19_04096 0.82 +0.8 401,874 + MPMX19_04096 0.82 -0.4 401,874 + MPMX19_04096 0.82 -0.0 401,874 + MPMX19_04096 0.82 -0.9 401,874 + MPMX19_04096 0.82 -0.2 401,874 + MPMX19_04096 0.82 -0.2 401,874 + MPMX19_04096 0.82 +0.9 401,875 - MPMX19_04096 0.83 -2.4 401,875 - MPMX19_04096 0.83 +0.3 401,875 - MPMX19_04096 0.83 -2.1 401,875 - MPMX19_04096 0.83 +0.2 401,875 - MPMX19_04096 0.83 -1.4 401,875 - MPMX19_04096 0.83 -0.2 401,875 - MPMX19_04096 0.83 -1.0 401,875 - MPMX19_04096 0.83 +0.2 401,875 - MPMX19_04096 0.83 -0.8 401,875 - MPMX19_04096 0.83 -0.2 401,995 + -0.7 401,995 + -1.2 401,995 + +1.3 401,996 - -1.0 401,996 - +0.2 401,996 - -0.9 401,996 - -0.5 402,042 + -0.2 402,042 + +1.2 402,043 - -2.1 402,043 - -0.8 402,043 - -1.4 402,043 - -1.2 402,093 - -0.2 402,093 - +0.2 402,093 - -0.3 402,093 - -2.6 402,093 - +0.2
Or see this region's nucleotide sequence