Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04092 and MPMX19_04093 are separated by 34 nucleotides MPMX19_04093 and MPMX19_04094 are separated by 62 nucleotides MPMX19_04094 and MPMX19_04095 are separated by 651 nucleotides
MPMX19_04092: MPMX19_04092 - Flagellar motor switch protein FliN, at 397,316 to 397,633
_04092
MPMX19_04093: MPMX19_04093 - hypothetical protein, at 397,668 to 398,444
_04093
MPMX19_04094: MPMX19_04094 - Flagellar M-ring protein, at 398,507 to 400,168
_04094
MPMX19_04095: MPMX19_04095 - hypothetical protein, at 400,820 to 401,341
_04095
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.578 kb on + strand, within MPMX19_04092 at 397.578 kb on + strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.669 kb on + strand at 397.669 kb on + strand at 397.670 kb on - strand at 397.670 kb on - strand at 398.155 kb on + strand, within MPMX19_04093 at 398.156 kb on - strand, within MPMX19_04093 at 398.156 kb on - strand, within MPMX19_04093 at 398.203 kb on + strand, within MPMX19_04093 at 398.204 kb on - strand, within MPMX19_04093 at 398.251 kb on + strand, within MPMX19_04093 at 398.251 kb on + strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 399.045 kb on + strand, within MPMX19_04094 at 399.046 kb on - strand, within MPMX19_04094 at 399.046 kb on - strand, within MPMX19_04094 at 399.046 kb on - strand, within MPMX19_04094 at 399.046 kb on - strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.075 kb on + strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.076 kb on - strand, within MPMX19_04094 at 399.162 kb on + strand, within MPMX19_04094 at 399.162 kb on + strand, within MPMX19_04094 at 399.162 kb on + strand, within MPMX19_04094 at 399.162 kb on + strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.163 kb on - strand, within MPMX19_04094 at 399.411 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.465 kb on + strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.466 kb on - strand, within MPMX19_04094 at 399.859 kb on - strand, within MPMX19_04094 at 399.859 kb on - strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.966 kb on + strand, within MPMX19_04094 at 399.967 kb on - strand, within MPMX19_04094 at 399.967 kb on - strand, within MPMX19_04094 at 399.967 kb on - strand, within MPMX19_04094 at 399.967 kb on - strand, within MPMX19_04094 at 400.032 kb on + strand at 400.032 kb on + strand at 400.033 kb on - strand at 400.033 kb on - strand at 400.074 kb on + strand at 400.074 kb on + strand at 400.074 kb on + strand at 400.075 kb on - strand at 400.075 kb on - strand at 400.075 kb on - strand at 400.075 kb on - strand at 400.075 kb on - strand at 400.075 kb on - strand at 400.266 kb on + strand at 400.266 kb on + strand at 400.266 kb on + strand at 400.266 kb on + strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.267 kb on - strand at 400.307 kb on - strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.348 kb on + strand at 400.349 kb on - strand at 400.349 kb on - strand at 400.471 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.599 kb on + strand at 400.600 kb on - strand at 400.777 kb on + strand at 400.777 kb on + strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 401.168 kb on + strand, within MPMX19_04095
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 397,539 + MPMX19_04092 0.70 -1.2 397,539 + MPMX19_04092 0.70 -1.8 397,539 + MPMX19_04092 0.70 +1.2 397,539 + MPMX19_04092 0.70 +0.1 397,539 + MPMX19_04092 0.70 -1.5 397,539 + MPMX19_04092 0.70 -0.8 397,539 + MPMX19_04092 0.70 -1.0 397,539 + MPMX19_04092 0.70 -0.4 397,539 + MPMX19_04092 0.70 -1.2 397,539 + MPMX19_04092 0.70 +2.2 397,539 + MPMX19_04092 0.70 +1.2 397,539 + MPMX19_04092 0.70 +0.2 397,539 + MPMX19_04092 0.70 -1.0 397,539 + MPMX19_04092 0.70 -1.5 397,539 + MPMX19_04092 0.70 -0.6 397,540 - MPMX19_04092 0.70 -0.6 397,540 - MPMX19_04092 0.70 -1.0 397,540 - MPMX19_04092 0.70 -1.3 397,540 - MPMX19_04092 0.70 -2.6 397,540 - MPMX19_04092 0.70 -1.2 397,540 - MPMX19_04092 0.70 -2.7 397,540 - MPMX19_04092 0.70 -0.4 397,540 - MPMX19_04092 0.70 -0.5 397,578 + MPMX19_04092 0.82 -1.0 397,578 + MPMX19_04092 0.82 +1.1 397,579 - MPMX19_04092 0.83 -2.1 397,579 - MPMX19_04092 0.83 -0.5 397,579 - MPMX19_04092 0.83 -0.6 397,669 + +1.4 397,669 + +0.2 397,670 - -0.4 397,670 - -0.6 398,155 + MPMX19_04093 0.63 +0.9 398,156 - MPMX19_04093 0.63 -0.0 398,156 - MPMX19_04093 0.63 -1.4 398,203 + MPMX19_04093 0.69 -0.4 398,204 - MPMX19_04093 0.69 -1.2 398,251 + MPMX19_04093 0.75 +1.2 398,251 + MPMX19_04093 0.75 +1.8 398,252 - MPMX19_04093 0.75 -0.6 398,252 - MPMX19_04093 0.75 -0.4 398,252 - MPMX19_04093 0.75 -0.7 398,252 - MPMX19_04093 0.75 +1.3 398,252 - MPMX19_04093 0.75 -0.5 398,520 + +0.4 398,520 + +0.5 398,520 + -1.2 398,520 + -1.8 398,520 + -2.1 398,520 + -1.0 398,520 + -1.7 398,520 + -2.5 398,520 + -1.3 398,520 + +2.2 398,521 - -3.7 398,521 - -1.3 398,521 - -2.5 398,521 - +0.2 398,521 - -1.1 398,521 - -1.7 398,521 - -1.3 398,521 - +2.2 398,521 - -0.6 399,045 + MPMX19_04094 0.32 -0.8 399,046 - MPMX19_04094 0.32 -0.3 399,046 - MPMX19_04094 0.32 -1.5 399,046 - MPMX19_04094 0.32 -2.8 399,046 - MPMX19_04094 0.32 -1.6 399,075 + MPMX19_04094 0.34 -1.5 399,075 + MPMX19_04094 0.34 -1.9 399,075 + MPMX19_04094 0.34 +0.3 399,075 + MPMX19_04094 0.34 -1.4 399,075 + MPMX19_04094 0.34 -0.9 399,075 + MPMX19_04094 0.34 -1.2 399,075 + MPMX19_04094 0.34 +1.2 399,075 + MPMX19_04094 0.34 -1.5 399,075 + MPMX19_04094 0.34 -1.2 399,075 + MPMX19_04094 0.34 -1.2 399,075 + MPMX19_04094 0.34 +0.2 399,075 + MPMX19_04094 0.34 -1.3 399,075 + MPMX19_04094 0.34 -0.0 399,075 + MPMX19_04094 0.34 +0.8 399,075 + MPMX19_04094 0.34 -1.4 399,075 + MPMX19_04094 0.34 +0.6 399,075 + MPMX19_04094 0.34 +0.8 399,075 + MPMX19_04094 0.34 -1.4 399,075 + MPMX19_04094 0.34 -1.7 399,076 - MPMX19_04094 0.34 -0.8 399,076 - MPMX19_04094 0.34 -1.7 399,076 - MPMX19_04094 0.34 -1.2 399,076 - MPMX19_04094 0.34 -2.1 399,076 - MPMX19_04094 0.34 -0.5 399,076 - MPMX19_04094 0.34 -0.4 399,076 - MPMX19_04094 0.34 -0.3 399,076 - MPMX19_04094 0.34 -1.5 399,076 - MPMX19_04094 0.34 -1.7 399,076 - MPMX19_04094 0.34 +0.4 399,076 - MPMX19_04094 0.34 +0.8 399,076 - MPMX19_04094 0.34 -0.2 399,076 - MPMX19_04094 0.34 +1.6 399,076 - MPMX19_04094 0.34 -0.5 399,076 - MPMX19_04094 0.34 +0.4 399,076 - MPMX19_04094 0.34 -2.0 399,076 - MPMX19_04094 0.34 +0.5 399,076 - MPMX19_04094 0.34 +0.8 399,076 - MPMX19_04094 0.34 -1.4 399,076 - MPMX19_04094 0.34 -0.4 399,076 - MPMX19_04094 0.34 -1.2 399,076 - MPMX19_04094 0.34 -0.3 399,076 - MPMX19_04094 0.34 -0.2 399,162 + MPMX19_04094 0.39 -1.3 399,162 + MPMX19_04094 0.39 -0.2 399,162 + MPMX19_04094 0.39 -0.0 399,162 + MPMX19_04094 0.39 +0.8 399,163 - MPMX19_04094 0.39 -2.6 399,163 - MPMX19_04094 0.39 -0.3 399,163 - MPMX19_04094 0.39 -1.8 399,163 - MPMX19_04094 0.39 +1.0 399,163 - MPMX19_04094 0.39 -0.3 399,163 - MPMX19_04094 0.39 +0.2 399,411 + MPMX19_04094 0.54 -0.6 399,465 + MPMX19_04094 0.58 +0.2 399,465 + MPMX19_04094 0.58 -1.1 399,465 + MPMX19_04094 0.58 -0.5 399,465 + MPMX19_04094 0.58 -0.6 399,465 + MPMX19_04094 0.58 -0.9 399,465 + MPMX19_04094 0.58 -2.3 399,465 + MPMX19_04094 0.58 +1.2 399,465 + MPMX19_04094 0.58 +0.1 399,465 + MPMX19_04094 0.58 -0.3 399,465 + MPMX19_04094 0.58 -0.1 399,465 + MPMX19_04094 0.58 +0.2 399,465 + MPMX19_04094 0.58 +0.2 399,465 + MPMX19_04094 0.58 -1.8 399,465 + MPMX19_04094 0.58 -1.1 399,465 + MPMX19_04094 0.58 -1.2 399,465 + MPMX19_04094 0.58 -1.8 399,465 + MPMX19_04094 0.58 -0.1 399,465 + MPMX19_04094 0.58 -0.4 399,465 + MPMX19_04094 0.58 -1.5 399,466 - MPMX19_04094 0.58 -0.2 399,466 - MPMX19_04094 0.58 -0.9 399,466 - MPMX19_04094 0.58 -0.9 399,466 - MPMX19_04094 0.58 -0.3 399,466 - MPMX19_04094 0.58 +0.1 399,466 - MPMX19_04094 0.58 -0.8 399,466 - MPMX19_04094 0.58 -0.7 399,466 - MPMX19_04094 0.58 -1.2 399,466 - MPMX19_04094 0.58 -1.9 399,466 - MPMX19_04094 0.58 -1.9 399,859 - MPMX19_04094 0.81 +0.3 399,859 - MPMX19_04094 0.81 -0.2 399,966 + MPMX19_04094 0.88 -1.3 399,966 + MPMX19_04094 0.88 +0.6 399,966 + MPMX19_04094 0.88 -1.1 399,966 + MPMX19_04094 0.88 -1.7 399,966 + MPMX19_04094 0.88 -0.4 399,966 + MPMX19_04094 0.88 -1.0 399,967 - MPMX19_04094 0.88 -0.3 399,967 - MPMX19_04094 0.88 +0.2 399,967 - MPMX19_04094 0.88 -0.2 399,967 - MPMX19_04094 0.88 -0.4 400,032 + -1.3 400,032 + +0.4 400,033 - -1.4 400,033 - -1.8 400,074 + -0.9 400,074 + -1.3 400,074 + -0.6 400,075 - -0.3 400,075 - -0.2 400,075 - +0.2 400,075 - -1.6 400,075 - +0.2 400,075 - -1.2 400,266 + -1.4 400,266 + -1.3 400,266 + -0.1 400,266 + -0.0 400,267 - -1.4 400,267 - -1.6 400,267 - -0.6 400,267 - +0.5 400,267 - -2.9 400,267 - +1.2 400,267 - -0.4 400,267 - +0.3 400,267 - +1.6 400,267 - +1.7 400,267 - -0.0 400,267 - -1.4 400,307 - -1.7 400,342 + -0.9 400,342 + -1.0 400,342 + -0.4 400,342 + +0.2 400,342 + -0.0 400,342 + -1.4 400,342 + -1.1 400,343 - -1.8 400,343 - -1.1 400,343 - +0.1 400,343 - -0.4 400,343 - -0.0 400,343 - -2.0 400,343 - -1.4 400,343 - -0.2 400,348 + +0.8 400,349 - +0.8 400,349 - -1.7 400,471 + -0.4 400,496 + +0.1 400,496 + -1.0 400,496 + -1.0 400,496 + -2.0 400,496 + -0.5 400,496 + -0.6 400,496 + -0.6 400,497 - +0.9 400,497 - -0.7 400,497 - -1.5 400,599 + -1.7 400,600 - -2.6 400,777 + -1.5 400,777 + +0.2 400,778 - -0.7 400,778 - -0.8 400,778 - +2.2 400,797 + +0.4 400,797 + -0.5 400,797 + -1.2 400,798 - -0.2 400,798 - -0.3 400,798 - +2.2 400,819 + -0.3 400,819 + -1.2 400,819 + -1.2 400,819 + -0.7 400,819 + +0.1 400,819 + -1.3 400,819 + -0.5 400,820 - +0.6 400,820 - -0.1 400,820 - +1.6 400,820 - +1.4 400,820 - -0.9 400,820 - -0.6 400,820 - +0.4 400,820 - -0.9 400,820 - -0.8 400,820 - +1.2 400,820 - -1.9 400,820 - +0.1 400,820 - +1.2 400,820 - -1.0 400,970 + MPMX19_04095 0.29 +0.6 400,970 + MPMX19_04095 0.29 -1.0 400,970 + MPMX19_04095 0.29 -0.1 400,970 + MPMX19_04095 0.29 -0.2 400,970 + MPMX19_04095 0.29 -0.8 400,970 + MPMX19_04095 0.29 +0.8 400,971 - MPMX19_04095 0.29 -0.5 400,971 - MPMX19_04095 0.29 +2.4 400,971 - MPMX19_04095 0.29 -0.1 401,168 + MPMX19_04095 0.67 +0.7
Or see this region's nucleotide sequence