Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04084 and MPMX19_04085 are separated by 167 nucleotides MPMX19_04085 and MPMX19_04086 overlap by 4 nucleotides MPMX19_04086 and MPMX19_04087 are separated by 19 nucleotides MPMX19_04087 and MPMX19_04088 overlap by 4 nucleotides
MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581
_04083
MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041
_04084
MPMX19_04085: MPMX19_04085 - hypothetical protein, at 388,209 to 388,562
_04085
MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463
_04086
MPMX19_04087: MPMX19_04087 - Flagellum site-determining protein YlxH, at 390,483 to 391,280
_04087
MPMX19_04088: MPMX19_04088 - Signal recognition particle 54 kDa protein, at 391,277 to 392,557
_04088
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.560 kb on + strand at 387.560 kb on + strand at 387.560 kb on + strand at 387.561 kb on - strand at 387.561 kb on - strand at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 388.027 kb on + strand at 388.027 kb on + strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.162 kb on + strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.612 kb on + strand at 388.612 kb on + strand at 388.612 kb on + strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.648 kb on - strand at 388.648 kb on - strand at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.545 kb on + strand, within MPMX19_04086 at 390.634 kb on + strand, within MPMX19_04087 at 390.634 kb on + strand, within MPMX19_04087 at 390.673 kb on + strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.769 kb on + strand, within MPMX19_04087 at 390.770 kb on - strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.890 kb on - strand, within MPMX19_04087 at 390.890 kb on - strand, within MPMX19_04087 at 391.251 kb on + strand at 391.252 kb on - strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.316 kb on - strand at 391.316 kb on - strand at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 387,560 + -1.0 387,560 + +1.0 387,560 + +0.3 387,561 - -0.6 387,561 - +0.4 387,862 + MPMX19_04084 0.60 -1.5 387,862 + MPMX19_04084 0.60 -0.0 387,862 + MPMX19_04084 0.60 -1.0 387,862 + MPMX19_04084 0.60 -2.1 387,862 + MPMX19_04084 0.60 -0.1 387,862 + MPMX19_04084 0.60 +1.0 387,862 + MPMX19_04084 0.60 -1.3 387,862 + MPMX19_04084 0.60 +0.2 387,862 + MPMX19_04084 0.60 -1.5 387,863 - MPMX19_04084 0.60 -0.4 387,863 - MPMX19_04084 0.60 -0.1 387,863 - MPMX19_04084 0.60 -1.4 387,863 - MPMX19_04084 0.60 -1.6 387,863 - MPMX19_04084 0.60 -1.4 387,863 - MPMX19_04084 0.60 +0.1 387,863 - MPMX19_04084 0.60 +1.6 388,027 + -0.3 388,027 + -1.3 388,028 - -0.6 388,028 - +0.7 388,028 - -1.4 388,028 - +0.4 388,028 - -1.6 388,028 - +2.4 388,028 - -1.7 388,028 - -0.4 388,054 + -1.0 388,054 + -1.4 388,054 + -1.4 388,054 + +0.2 388,054 + -1.3 388,054 + -0.1 388,054 + -1.6 388,054 + -0.1 388,055 - +0.2 388,055 - -1.3 388,055 - +1.4 388,055 - -0.4 388,055 - -0.6 388,055 - -1.6 388,055 - -1.5 388,055 - +1.9 388,055 - -0.3 388,055 - -0.7 388,055 - -0.4 388,055 - -0.4 388,055 - +0.0 388,055 - -0.2 388,066 + +0.8 388,066 + +0.3 388,066 + -1.1 388,066 + -0.5 388,066 + -0.1 388,066 + -0.7 388,066 + -0.1 388,066 + -0.6 388,066 + -0.1 388,066 + -1.2 388,067 - -0.4 388,067 - +0.4 388,067 - -0.5 388,067 - +0.1 388,067 - -0.3 388,162 + -1.5 388,163 - -0.3 388,163 - -1.8 388,163 - -0.1 388,163 - -1.0 388,184 + -0.3 388,184 + +0.2 388,184 + -0.4 388,193 + -0.3 388,193 + -0.1 388,193 + +0.0 388,193 + +0.1 388,193 + +1.2 388,193 + +1.7 388,196 + +0.2 388,196 + +1.4 388,196 + +0.2 388,196 + -1.1 388,196 + -0.0 388,196 + +0.3 388,196 + +0.4 388,196 + -1.9 388,196 + +0.0 388,196 + +0.9 388,196 + +0.3 388,196 + +1.1 388,196 + -0.4 388,196 + -0.4 388,196 + -0.4 388,411 + MPMX19_04085 0.57 -0.0 388,411 + MPMX19_04085 0.57 +0.4 388,411 + MPMX19_04085 0.57 +0.0 388,411 + MPMX19_04085 0.57 +0.6 388,411 + MPMX19_04085 0.57 -0.2 388,411 + MPMX19_04085 0.57 +1.0 388,411 + MPMX19_04085 0.57 -1.3 388,412 - MPMX19_04085 0.57 -1.7 388,412 - MPMX19_04085 0.57 +0.6 388,612 + -0.1 388,612 + -1.3 388,612 + -1.5 388,613 - +0.2 388,613 - -0.3 388,613 - +0.1 388,613 - -1.6 388,613 - -1.8 388,613 - +0.6 388,613 - -1.0 388,613 - +0.7 388,613 - -2.3 388,613 - -0.0 388,613 - -0.8 388,613 - -0.2 388,648 - -1.3 388,648 - -1.6 388,923 + MPMX19_04086 0.19 -1.9 388,923 + MPMX19_04086 0.19 -1.0 388,923 + MPMX19_04086 0.19 -0.1 388,923 + MPMX19_04086 0.19 -0.7 388,923 + MPMX19_04086 0.19 -0.8 388,923 + MPMX19_04086 0.19 +0.2 388,923 + MPMX19_04086 0.19 -0.4 388,923 + MPMX19_04086 0.19 -0.1 388,923 + MPMX19_04086 0.19 -0.8 388,923 + MPMX19_04086 0.19 +0.0 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 +0.0 388,923 + MPMX19_04086 0.19 -0.1 388,923 + MPMX19_04086 0.19 -1.4 388,923 + MPMX19_04086 0.19 +0.0 388,923 + MPMX19_04086 0.19 +0.1 388,924 - MPMX19_04086 0.19 +1.2 388,924 - MPMX19_04086 0.19 -0.1 388,924 - MPMX19_04086 0.19 -1.9 388,924 - MPMX19_04086 0.19 -0.7 388,924 - MPMX19_04086 0.19 -0.4 388,924 - MPMX19_04086 0.19 -1.4 388,924 - MPMX19_04086 0.19 -0.8 388,924 - MPMX19_04086 0.19 -0.3 388,924 - MPMX19_04086 0.19 -0.5 388,924 - MPMX19_04086 0.19 -0.7 388,924 - MPMX19_04086 0.19 -0.0 388,924 - MPMX19_04086 0.19 -0.8 388,924 - MPMX19_04086 0.19 +0.7 388,924 - MPMX19_04086 0.19 -1.1 388,924 - MPMX19_04086 0.19 -0.1 389,220 - MPMX19_04086 0.35 +0.6 389,220 - MPMX19_04086 0.35 -0.5 389,220 - MPMX19_04086 0.35 +0.4 389,545 + MPMX19_04086 0.52 -0.1 390,634 + MPMX19_04087 0.19 -1.1 390,634 + MPMX19_04087 0.19 -1.6 390,673 + MPMX19_04087 0.24 +1.2 390,674 - MPMX19_04087 0.24 +0.2 390,674 - MPMX19_04087 0.24 -0.6 390,674 - MPMX19_04087 0.24 -0.1 390,674 - MPMX19_04087 0.24 +0.6 390,674 - MPMX19_04087 0.24 +0.6 390,674 - MPMX19_04087 0.24 -0.5 390,769 + MPMX19_04087 0.36 +0.6 390,770 - MPMX19_04087 0.36 -1.5 390,889 + MPMX19_04087 0.51 +0.4 390,889 + MPMX19_04087 0.51 +0.7 390,889 + MPMX19_04087 0.51 +2.2 390,889 + MPMX19_04087 0.51 -0.1 390,889 + MPMX19_04087 0.51 -1.6 390,889 + MPMX19_04087 0.51 -1.3 390,890 - MPMX19_04087 0.51 -1.6 390,890 - MPMX19_04087 0.51 -0.6 391,251 + -1.3 391,252 - +0.4 391,315 + -1.7 391,315 + -0.9 391,315 + +1.0 391,315 + +2.2 391,315 + -0.0 391,316 - -0.0 391,316 - +1.7 391,443 + MPMX19_04088 0.13 +0.3 391,443 + MPMX19_04088 0.13 -1.5 391,443 + MPMX19_04088 0.13 -1.0 391,443 + MPMX19_04088 0.13 -0.6 391,444 - MPMX19_04088 0.13 -0.2 391,444 - MPMX19_04088 0.13 -1.0 391,444 - MPMX19_04088 0.13 -1.5
Or see this region's nucleotide sequence