Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04072

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04071 and MPMX19_04072 are separated by 324 nucleotidesMPMX19_04072 and MPMX19_04073 are separated by 209 nucleotides MPMX19_04071: MPMX19_04071 - Catabolite control protein A, at 376,297 to 377,316 _04071 MPMX19_04072: MPMX19_04072 - tRNA-Arg, at 377,641 to 377,717 _04072 MPMX19_04073: MPMX19_04073 - hypothetical protein, at 377,927 to 379,399 _04073 Position (kb) 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 377.012 kb on + strand, within MPMX19_04071at 377.012 kb on + strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.789 kb on + strandat 377.789 kb on + strandat 377.928 kb on + strandat 377.928 kb on + strandat 377.929 kb on - strandat 377.929 kb on - strandat 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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376,871 + MPMX19_04071 0.56 +0.6
376,871 + MPMX19_04071 0.56 +1.4
376,871 + MPMX19_04071 0.56 +0.7
376,871 + MPMX19_04071 0.56 -0.4
376,871 + MPMX19_04071 0.56 -0.9
376,871 + MPMX19_04071 0.56 -0.3
376,871 + MPMX19_04071 0.56 -1.6
376,871 + MPMX19_04071 0.56 -0.6
376,872 - MPMX19_04071 0.56 +0.7
376,872 - MPMX19_04071 0.56 -1.0
376,872 - MPMX19_04071 0.56 +0.0
376,872 - MPMX19_04071 0.56 -0.8
376,872 - MPMX19_04071 0.56 -0.6
376,872 - MPMX19_04071 0.56 -0.3
376,872 - MPMX19_04071 0.56 -0.4
376,872 - MPMX19_04071 0.56 -1.4
376,883 + MPMX19_04071 0.57 +0.0
376,883 + MPMX19_04071 0.57 -1.2
376,883 + MPMX19_04071 0.57 +0.3
376,883 + MPMX19_04071 0.57 -0.1
376,883 + MPMX19_04071 0.57 -0.6
376,883 + MPMX19_04071 0.57 -1.3
376,883 + MPMX19_04071 0.57 -0.6
376,883 + MPMX19_04071 0.57 +0.4
376,883 + MPMX19_04071 0.57 +0.2
376,883 + MPMX19_04071 0.57 -0.7
376,883 + MPMX19_04071 0.57 +0.6
376,883 + MPMX19_04071 0.57 -0.6
376,884 - MPMX19_04071 0.58 -0.4
376,884 - MPMX19_04071 0.58 -0.8
376,884 - MPMX19_04071 0.58 +0.2
376,884 - MPMX19_04071 0.58 +0.2
376,884 - MPMX19_04071 0.58 -0.1
376,884 - MPMX19_04071 0.58 -0.8
377,012 + MPMX19_04071 0.70 -0.1
377,012 + MPMX19_04071 0.70 -0.3
377,013 - MPMX19_04071 0.70 +0.1
377,013 - MPMX19_04071 0.70 -0.9
377,013 - MPMX19_04071 0.70 -0.5
377,013 - MPMX19_04071 0.70 -0.0
377,039 + MPMX19_04071 0.73 -0.8
377,039 + MPMX19_04071 0.73 +0.3
377,039 + MPMX19_04071 0.73 -0.8
377,039 + MPMX19_04071 0.73 -0.6
377,040 - MPMX19_04071 0.73 -0.1
377,040 - MPMX19_04071 0.73 -0.6
377,040 - MPMX19_04071 0.73 -2.2
377,789 + +0.9
377,789 + +0.1
377,928 + -1.3
377,928 + +0.2
377,929 - -0.8
377,929 - +0.0
378,111 + MPMX19_04073 0.12 -0.4
378,111 + MPMX19_04073 0.12 +1.6
378,111 + MPMX19_04073 0.12 +0.4
378,112 - MPMX19_04073 0.13 +0.2
378,112 - MPMX19_04073 0.13 +0.0
378,112 - MPMX19_04073 0.13 -0.1
378,112 - MPMX19_04073 0.13 -1.7
378,429 + MPMX19_04073 0.34 -0.9
378,429 + MPMX19_04073 0.34 -1.4
378,429 + MPMX19_04073 0.34 +0.4
378,429 + MPMX19_04073 0.34 -2.6
378,429 + MPMX19_04073 0.34 -0.4
378,429 + MPMX19_04073 0.34 +0.6
378,429 + MPMX19_04073 0.34 -1.1
378,429 + MPMX19_04073 0.34 +1.9
378,429 + MPMX19_04073 0.34 -0.6
378,429 + MPMX19_04073 0.34 +0.6
378,429 + MPMX19_04073 0.34 +0.0
378,429 + MPMX19_04073 0.34 -0.4
378,429 + MPMX19_04073 0.34 +1.2
378,430 - MPMX19_04073 0.34 -1.5
378,430 - MPMX19_04073 0.34 +2.2
378,430 - MPMX19_04073 0.34 +0.2
378,430 - MPMX19_04073 0.34 -0.6
378,430 - MPMX19_04073 0.34 +0.9
378,430 - MPMX19_04073 0.34 -0.8
378,430 - MPMX19_04073 0.34 -0.2
378,430 - MPMX19_04073 0.34 -0.6
378,430 - MPMX19_04073 0.34 +0.1
378,430 - MPMX19_04073 0.34 -0.6
378,430 - MPMX19_04073 0.34 +0.2
378,430 - MPMX19_04073 0.34 +0.4
378,430 - MPMX19_04073 0.34 -0.6
378,430 - MPMX19_04073 0.34 -1.3

Or see this region's nucleotide sequence