Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04055

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04054 and MPMX19_04055 are separated by 152 nucleotidesMPMX19_04055 and MPMX19_04056 are separated by 139 nucleotides MPMX19_04054: MPMX19_04054 - Adaptive-response sensory-kinase SasA, at 357,283 to 358,728 _04054 MPMX19_04055: MPMX19_04055 - 2,5-diketo-D-gluconic acid reductase B, at 358,881 to 359,705 _04055 MPMX19_04056: MPMX19_04056 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 359,845 to 362,130 _04056 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2 3at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.106 kb on - strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.453 kb on + strand, within MPMX19_04054at 358.453 kb on + strand, within MPMX19_04054at 358.454 kb on - strand, within MPMX19_04054at 358.454 kb on - strand, within MPMX19_04054at 358.831 kb on + strandat 358.831 kb on + strandat 358.832 kb on - strandat 358.860 kb on + strandat 358.860 kb on + strandat 358.860 kb on + strandat 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055at 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.904 kb on - strandat 359.904 kb on - strandat 359.999 kb on + strandat 359.999 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.045 kb on - strandat 360.263 kb on + strand, within MPMX19_04056at 360.263 kb on + strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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358,105 + MPMX19_04054 0.57 +0.2
358,105 + MPMX19_04054 0.57 -1.6
358,105 + MPMX19_04054 0.57 -1.2
358,105 + MPMX19_04054 0.57 -1.2
358,105 + MPMX19_04054 0.57 +0.6
358,106 - MPMX19_04054 0.57 +1.2
358,264 + MPMX19_04054 0.68 -0.3
358,264 + MPMX19_04054 0.68 -1.2
358,264 + MPMX19_04054 0.68 +0.6
358,264 + MPMX19_04054 0.68 -1.6
358,265 - MPMX19_04054 0.68 +1.0
358,265 - MPMX19_04054 0.68 -1.4
358,265 - MPMX19_04054 0.68 +0.3
358,265 - MPMX19_04054 0.68 +0.3
358,265 - MPMX19_04054 0.68 -0.3
358,291 + MPMX19_04054 0.70 -1.1
358,291 + MPMX19_04054 0.70 +0.2
358,291 + MPMX19_04054 0.70 -0.5
358,291 + MPMX19_04054 0.70 -0.2
358,292 - MPMX19_04054 0.70 +0.2
358,292 - MPMX19_04054 0.70 +0.5
358,292 - MPMX19_04054 0.70 +0.9
358,292 - MPMX19_04054 0.70 +0.4
358,292 - MPMX19_04054 0.70 -0.3
358,292 - MPMX19_04054 0.70 -0.0
358,453 + MPMX19_04054 0.81 -0.0
358,453 + MPMX19_04054 0.81 -1.9
358,454 - MPMX19_04054 0.81 -0.6
358,454 - MPMX19_04054 0.81 -0.1
358,831 + +0.0
358,831 + -1.3
358,832 - -0.4
358,860 + +1.2
358,860 + +0.4
358,860 + -0.3
359,037 + MPMX19_04055 0.19 -1.2
359,037 + MPMX19_04055 0.19 -0.2
359,037 + MPMX19_04055 0.19 -0.4
359,037 + MPMX19_04055 0.19 +0.0
359,038 - MPMX19_04055 0.19 -0.4
359,038 - MPMX19_04055 0.19 -0.9
359,038 - MPMX19_04055 0.19 +3.2
359,155 + MPMX19_04055 0.33 -0.5
359,155 + MPMX19_04055 0.33 +0.2
359,155 + MPMX19_04055 0.33 -0.1
359,155 + MPMX19_04055 0.33 -0.8
359,155 + MPMX19_04055 0.33 -0.2
359,155 + MPMX19_04055 0.33 +1.6
359,155 + MPMX19_04055 0.33 -0.4
359,155 + MPMX19_04055 0.33 +0.4
359,155 + MPMX19_04055 0.33 +0.5
359,155 + MPMX19_04055 0.33 -1.0
359,155 + MPMX19_04055 0.33 -1.0
359,155 + MPMX19_04055 0.33 +1.5
359,156 - MPMX19_04055 0.33 -0.4
359,156 - MPMX19_04055 0.33 -0.4
359,156 - MPMX19_04055 0.33 -0.8
359,156 - MPMX19_04055 0.33 +1.0
359,156 - MPMX19_04055 0.33 +0.0
359,156 - MPMX19_04055 0.33 -0.5
359,156 - MPMX19_04055 0.33 -1.3
359,156 - MPMX19_04055 0.33 -0.1
359,156 - MPMX19_04055 0.33 -0.5
359,156 - MPMX19_04055 0.33 -0.5
359,156 - MPMX19_04055 0.33 -0.1
359,156 - MPMX19_04055 0.33 -0.1
359,156 - MPMX19_04055 0.33 +0.3
359,156 - MPMX19_04055 0.33 -1.0
359,156 - MPMX19_04055 0.33 +0.6
359,156 - MPMX19_04055 0.33 -0.5
359,158 + MPMX19_04055 0.34 +0.2
359,158 + MPMX19_04055 0.34 -0.4
359,158 + MPMX19_04055 0.34 -0.8
359,158 + MPMX19_04055 0.34 +0.2
359,219 - MPMX19_04055 0.41 +0.6
359,219 - MPMX19_04055 0.41 +0.3
359,219 - MPMX19_04055 0.41 -0.0
359,414 + MPMX19_04055 0.65 +0.4
359,414 + MPMX19_04055 0.65 -1.3
359,473 + MPMX19_04055 0.72 -0.6
359,473 + MPMX19_04055 0.72 -0.2
359,473 + MPMX19_04055 0.72 +0.5
359,473 + MPMX19_04055 0.72 -0.9
359,473 + MPMX19_04055 0.72 -2.0
359,473 + MPMX19_04055 0.72 -0.9
359,473 + MPMX19_04055 0.72 +0.2
359,473 + MPMX19_04055 0.72 +0.4
359,473 + MPMX19_04055 0.72 -0.3
359,473 + MPMX19_04055 0.72 +0.3
359,474 - MPMX19_04055 0.72 +0.4
359,474 - MPMX19_04055 0.72 -0.3
359,474 - MPMX19_04055 0.72 +0.0
359,474 - MPMX19_04055 0.72 -0.5
359,474 - MPMX19_04055 0.72 +0.3
359,474 - MPMX19_04055 0.72 +0.8
359,474 - MPMX19_04055 0.72 -1.1
359,474 - MPMX19_04055 0.72 -0.8
359,474 - MPMX19_04055 0.72 +0.2
359,474 - MPMX19_04055 0.72 -1.2
359,566 + MPMX19_04055 0.83 -0.6
359,566 + MPMX19_04055 0.83 +1.2
359,566 + MPMX19_04055 0.83 +0.6
359,567 - MPMX19_04055 0.83 -1.1
359,567 - MPMX19_04055 0.83 -0.5
359,762 + -0.5
359,762 + -0.1
359,762 + +1.2
359,762 + +0.3
359,762 + -0.7
359,762 + -0.4
359,762 + +1.0
359,762 + +0.4
359,762 + +0.4
359,762 + -1.3
359,762 + +2.2
359,762 + -0.3
359,762 + -0.0
359,762 + -0.0
359,762 + -0.0
359,762 + +0.3
359,762 + -0.1
359,762 + -0.3
359,762 + +0.7
359,762 + +0.8
359,762 + -0.6
359,763 - -0.6
359,763 - -1.2
359,763 - -1.6
359,763 - -1.1
359,763 - -1.2
359,763 - +0.2
359,763 - +0.4
359,763 - -1.6
359,763 - -0.2
359,763 - -0.2
359,763 - +0.9
359,763 - -1.6
359,903 + -0.8
359,903 + -0.5
359,903 + +1.2
359,903 + -0.8
359,903 + +0.9
359,903 + +0.4
359,903 + -1.3
359,904 - -0.2
359,904 - -0.2
359,999 + +0.2
359,999 + -0.8
360,044 + -0.2
360,044 + -1.2
360,044 + +0.8
360,044 + +1.2
360,044 + +0.5
360,044 + -0.1
360,045 - -0.2
360,263 + MPMX19_04056 0.18 +0.4
360,263 + MPMX19_04056 0.18 -0.9
360,264 - MPMX19_04056 0.18 -1.0
360,264 - MPMX19_04056 0.18 -0.4
360,264 - MPMX19_04056 0.18 +0.4
360,264 - MPMX19_04056 0.18 +0.9
360,359 + MPMX19_04056 0.22 +0.2
360,359 + MPMX19_04056 0.22 +0.2
360,359 + MPMX19_04056 0.22 -1.3
360,359 + MPMX19_04056 0.22 +0.3
360,359 + MPMX19_04056 0.22 +0.8
360,359 + MPMX19_04056 0.22 -1.5
360,359 + MPMX19_04056 0.22 +0.1
360,359 + MPMX19_04056 0.22 +1.2
360,359 + MPMX19_04056 0.22 -0.8
360,359 + MPMX19_04056 0.22 -1.1
360,359 + MPMX19_04056 0.22 -0.8
360,360 - MPMX19_04056 0.23 -1.2
360,360 - MPMX19_04056 0.23 +0.0
360,360 - MPMX19_04056 0.23 -1.3
360,360 - MPMX19_04056 0.23 -0.9
360,360 - MPMX19_04056 0.23 -0.9
360,360 - MPMX19_04056 0.23 -0.2
360,360 - MPMX19_04056 0.23 +0.1

Or see this region's nucleotide sequence