Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04053

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04052 and MPMX19_04053 are separated by 269 nucleotidesMPMX19_04053 and MPMX19_04054 overlap by 11 nucleotides MPMX19_04052: MPMX19_04052 - putative sugar-binding periplasmic protein, at 354,982 to 356,274 _04052 MPMX19_04053: MPMX19_04053 - Transcriptional regulatory protein OmpR, at 356,544 to 357,293 _04053 MPMX19_04054: MPMX19_04054 - Adaptive-response sensory-kinase SasA, at 357,283 to 358,728 _04054 Position (kb) 356 357 358Strain fitness (log2 ratio) -2 -1 0 1 2at 355.835 kb on + strand, within MPMX19_04052at 355.835 kb on + strand, within MPMX19_04052at 355.835 kb on + strand, within MPMX19_04052at 355.835 kb on + strand, within MPMX19_04052at 355.836 kb on - strand, within MPMX19_04052at 355.836 kb on - strand, within MPMX19_04052at 355.836 kb on - strand, within MPMX19_04052at 355.836 kb on - strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.838 kb on + strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.839 kb on - strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.850 kb on + strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 355.851 kb on - strand, within MPMX19_04052at 356.138 kb on + strand, within MPMX19_04052at 356.138 kb on + strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.139 kb on - strand, within MPMX19_04052at 356.396 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.427 kb on + strandat 356.427 kb on + strandat 356.428 kb on - strandat 356.428 kb on - strandat 356.453 kb on + strandat 356.454 kb on - strandat 356.454 kb on - strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.844 kb on + strand, within MPMX19_04053at 356.844 kb on + strand, within MPMX19_04053at 356.844 kb on + strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 357.033 kb on + strand, within MPMX19_04053at 357.033 kb on + strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.225 kb on + strandat 357.225 kb on + strandat 357.225 kb on + strandat 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.106 kb on - strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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355,835 + MPMX19_04052 0.66 +1.2
355,835 + MPMX19_04052 0.66 -0.4
355,835 + MPMX19_04052 0.66 -0.2
355,835 + MPMX19_04052 0.66 +0.4
355,836 - MPMX19_04052 0.66 -1.0
355,836 - MPMX19_04052 0.66 +0.4
355,836 - MPMX19_04052 0.66 -0.0
355,836 - MPMX19_04052 0.66 -2.1
355,838 + MPMX19_04052 0.66 +0.9
355,838 + MPMX19_04052 0.66 +0.9
355,838 + MPMX19_04052 0.66 +0.4
355,838 + MPMX19_04052 0.66 -1.2
355,838 + MPMX19_04052 0.66 +0.6
355,838 + MPMX19_04052 0.66 +1.4
355,838 + MPMX19_04052 0.66 -0.0
355,838 + MPMX19_04052 0.66 -0.8
355,839 - MPMX19_04052 0.66 -0.2
355,839 - MPMX19_04052 0.66 +0.4
355,839 - MPMX19_04052 0.66 -1.2
355,839 - MPMX19_04052 0.66 -2.2
355,839 - MPMX19_04052 0.66 +0.9
355,839 - MPMX19_04052 0.66 -0.2
355,839 - MPMX19_04052 0.66 +0.2
355,839 - MPMX19_04052 0.66 -0.4
355,839 - MPMX19_04052 0.66 +0.2
355,839 - MPMX19_04052 0.66 -1.1
355,839 - MPMX19_04052 0.66 -0.5
355,839 - MPMX19_04052 0.66 -0.6
355,839 - MPMX19_04052 0.66 +1.0
355,839 - MPMX19_04052 0.66 -0.8
355,839 - MPMX19_04052 0.66 +1.7
355,850 + MPMX19_04052 0.67 -0.3
355,850 + MPMX19_04052 0.67 +0.4
355,850 + MPMX19_04052 0.67 +0.2
355,850 + MPMX19_04052 0.67 +0.2
355,850 + MPMX19_04052 0.67 -0.3
355,850 + MPMX19_04052 0.67 -0.4
355,850 + MPMX19_04052 0.67 -0.0
355,851 - MPMX19_04052 0.67 -0.3
355,851 - MPMX19_04052 0.67 +0.8
355,851 - MPMX19_04052 0.67 -0.0
355,851 - MPMX19_04052 0.67 +1.8
355,851 - MPMX19_04052 0.67 +0.6
355,851 - MPMX19_04052 0.67 +0.6
355,851 - MPMX19_04052 0.67 +0.2
355,851 - MPMX19_04052 0.67 -1.2
355,851 - MPMX19_04052 0.67 -0.4
355,851 - MPMX19_04052 0.67 -0.1
356,138 + MPMX19_04052 0.89 +0.2
356,138 + MPMX19_04052 0.89 +2.2
356,139 - MPMX19_04052 0.89 +0.0
356,139 - MPMX19_04052 0.89 +0.4
356,139 - MPMX19_04052 0.89 -0.6
356,139 - MPMX19_04052 0.89 +0.6
356,139 - MPMX19_04052 0.89 -1.4
356,139 - MPMX19_04052 0.89 -0.0
356,139 - MPMX19_04052 0.89 -1.5
356,139 - MPMX19_04052 0.89 +0.5
356,139 - MPMX19_04052 0.89 -1.4
356,139 - MPMX19_04052 0.89 -1.2
356,396 + -0.3
356,416 + -0.3
356,416 + -0.4
356,416 + -1.2
356,416 + +0.2
356,427 + +0.4
356,427 + -0.4
356,428 - -0.0
356,428 - +0.3
356,453 + +0.8
356,454 - -0.2
356,454 - +0.6
356,475 + -1.4
356,475 + -0.8
356,475 + -2.3
356,475 + +0.7
356,475 + -0.3
356,475 + -0.4
356,475 + +0.2
356,475 + +0.7
356,476 - -1.9
356,476 - -1.4
356,476 - +0.3
356,476 - +0.5
356,476 - +0.1
356,476 - +0.8
356,844 + MPMX19_04053 0.40 +0.4
356,844 + MPMX19_04053 0.40 +0.6
356,844 + MPMX19_04053 0.40 -0.9
356,845 - MPMX19_04053 0.40 +0.2
356,845 - MPMX19_04053 0.40 -0.3
356,845 - MPMX19_04053 0.40 +0.4
356,845 - MPMX19_04053 0.40 -1.3
357,033 + MPMX19_04053 0.65 -0.6
357,033 + MPMX19_04053 0.65 -1.0
357,034 - MPMX19_04053 0.65 -1.2
357,034 - MPMX19_04053 0.65 +0.6
357,034 - MPMX19_04053 0.65 -1.0
357,225 + -2.4
357,225 + -0.3
357,225 + -2.2
357,733 + MPMX19_04054 0.31 +1.8
357,733 + MPMX19_04054 0.31 -1.0
357,733 + MPMX19_04054 0.31 -0.6
357,733 + MPMX19_04054 0.31 -0.2
357,733 + MPMX19_04054 0.31 -0.8
357,733 + MPMX19_04054 0.31 +0.7
357,733 + MPMX19_04054 0.31 -0.6
357,733 + MPMX19_04054 0.31 +0.4
357,733 + MPMX19_04054 0.31 -2.1
357,733 + MPMX19_04054 0.31 +0.0
357,733 + MPMX19_04054 0.31 -1.2
357,733 + MPMX19_04054 0.31 -0.0
357,733 + MPMX19_04054 0.31 +0.2
357,733 + MPMX19_04054 0.31 -0.0
357,734 - MPMX19_04054 0.31 -0.2
357,734 - MPMX19_04054 0.31 -0.0
357,734 - MPMX19_04054 0.31 -2.4
357,734 - MPMX19_04054 0.31 -0.2
357,734 - MPMX19_04054 0.31 -0.4
357,734 - MPMX19_04054 0.31 -0.6
357,734 - MPMX19_04054 0.31 -1.2
357,734 - MPMX19_04054 0.31 -0.8
357,734 - MPMX19_04054 0.31 -0.0
358,105 + MPMX19_04054 0.57 +0.2
358,105 + MPMX19_04054 0.57 -1.6
358,105 + MPMX19_04054 0.57 -1.2
358,105 + MPMX19_04054 0.57 -1.2
358,105 + MPMX19_04054 0.57 +0.6
358,106 - MPMX19_04054 0.57 +1.2
358,264 + MPMX19_04054 0.68 -0.3
358,264 + MPMX19_04054 0.68 -1.2
358,264 + MPMX19_04054 0.68 +0.6
358,264 + MPMX19_04054 0.68 -1.6
358,265 - MPMX19_04054 0.68 +1.0
358,265 - MPMX19_04054 0.68 -1.4
358,265 - MPMX19_04054 0.68 +0.3
358,265 - MPMX19_04054 0.68 +0.3
358,265 - MPMX19_04054 0.68 -0.3
358,291 + MPMX19_04054 0.70 -1.1
358,291 + MPMX19_04054 0.70 +0.2
358,291 + MPMX19_04054 0.70 -0.5
358,291 + MPMX19_04054 0.70 -0.2
358,292 - MPMX19_04054 0.70 +0.2
358,292 - MPMX19_04054 0.70 +0.5
358,292 - MPMX19_04054 0.70 +0.9
358,292 - MPMX19_04054 0.70 +0.4
358,292 - MPMX19_04054 0.70 -0.3
358,292 - MPMX19_04054 0.70 -0.0

Or see this region's nucleotide sequence