Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04051 and MPMX19_04052 are separated by 114 nucleotides MPMX19_04052 and MPMX19_04053 are separated by 269 nucleotides
MPMX19_04051: MPMX19_04051 - Alcohol dehydrogenase, at 353,794 to 354,867
_04051
MPMX19_04052: MPMX19_04052 - putative sugar-binding periplasmic protein, at 354,982 to 356,274
_04052
MPMX19_04053: MPMX19_04053 - Transcriptional regulatory protein OmpR, at 356,544 to 357,293
_04053
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.187 kb on + strand, within MPMX19_04051 at 354.187 kb on + strand, within MPMX19_04051 at 354.187 kb on + strand, within MPMX19_04051 at 354.188 kb on - strand, within MPMX19_04051 at 354.188 kb on - strand, within MPMX19_04051 at 354.622 kb on + strand, within MPMX19_04051 at 354.622 kb on + strand, within MPMX19_04051 at 354.622 kb on + strand, within MPMX19_04051 at 354.622 kb on + strand, within MPMX19_04051 at 354.623 kb on - strand, within MPMX19_04051 at 354.623 kb on - strand, within MPMX19_04051 at 354.623 kb on - strand, within MPMX19_04051 at 354.623 kb on - strand, within MPMX19_04051 at 354.811 kb on + strand at 354.811 kb on + strand at 354.811 kb on + strand at 354.811 kb on + strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.812 kb on - strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.983 kb on + strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 354.984 kb on - strand at 355.230 kb on + strand, within MPMX19_04052 at 355.230 kb on + strand, within MPMX19_04052 at 355.231 kb on - strand, within MPMX19_04052 at 355.231 kb on - strand, within MPMX19_04052 at 355.352 kb on + strand, within MPMX19_04052 at 355.352 kb on + strand, within MPMX19_04052 at 355.352 kb on + strand, within MPMX19_04052 at 355.352 kb on + strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.353 kb on - strand, within MPMX19_04052 at 355.523 kb on + strand, within MPMX19_04052 at 355.524 kb on - strand, within MPMX19_04052 at 355.524 kb on - strand, within MPMX19_04052 at 355.835 kb on + strand, within MPMX19_04052 at 355.835 kb on + strand, within MPMX19_04052 at 355.835 kb on + strand, within MPMX19_04052 at 355.835 kb on + strand, within MPMX19_04052 at 355.836 kb on - strand, within MPMX19_04052 at 355.836 kb on - strand, within MPMX19_04052 at 355.836 kb on - strand, within MPMX19_04052 at 355.836 kb on - strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.838 kb on + strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.839 kb on - strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.850 kb on + strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 355.851 kb on - strand, within MPMX19_04052 at 356.138 kb on + strand, within MPMX19_04052 at 356.138 kb on + strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.139 kb on - strand, within MPMX19_04052 at 356.396 kb on + strand at 356.416 kb on + strand at 356.416 kb on + strand at 356.416 kb on + strand at 356.416 kb on + strand at 356.427 kb on + strand at 356.427 kb on + strand at 356.428 kb on - strand at 356.428 kb on - strand at 356.453 kb on + strand at 356.454 kb on - strand at 356.454 kb on - strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.475 kb on + strand at 356.476 kb on - strand at 356.476 kb on - strand at 356.476 kb on - strand at 356.476 kb on - strand at 356.476 kb on - strand at 356.476 kb on - strand at 356.844 kb on + strand, within MPMX19_04053 at 356.844 kb on + strand, within MPMX19_04053 at 356.844 kb on + strand, within MPMX19_04053 at 356.845 kb on - strand, within MPMX19_04053 at 356.845 kb on - strand, within MPMX19_04053 at 356.845 kb on - strand, within MPMX19_04053 at 356.845 kb on - strand, within MPMX19_04053 at 357.033 kb on + strand, within MPMX19_04053 at 357.033 kb on + strand, within MPMX19_04053 at 357.034 kb on - strand, within MPMX19_04053 at 357.034 kb on - strand, within MPMX19_04053 at 357.034 kb on - strand, within MPMX19_04053 at 357.225 kb on + strand at 357.225 kb on + strand at 357.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 354,187 + MPMX19_04051 0.37 -1.0 354,187 + MPMX19_04051 0.37 -0.4 354,187 + MPMX19_04051 0.37 -0.0 354,188 - MPMX19_04051 0.37 +0.2 354,188 - MPMX19_04051 0.37 +0.1 354,622 + MPMX19_04051 0.77 -0.2 354,622 + MPMX19_04051 0.77 +0.1 354,622 + MPMX19_04051 0.77 +1.8 354,622 + MPMX19_04051 0.77 -0.3 354,623 - MPMX19_04051 0.77 -0.3 354,623 - MPMX19_04051 0.77 -0.2 354,623 - MPMX19_04051 0.77 -0.8 354,623 - MPMX19_04051 0.77 +0.4 354,811 + -1.7 354,811 + +0.9 354,811 + -0.2 354,811 + -1.5 354,812 - -1.0 354,812 - +0.2 354,812 - -0.3 354,812 - -0.4 354,812 - -1.9 354,812 - -0.4 354,812 - +1.6 354,812 - +1.2 354,812 - +0.3 354,983 + -0.6 354,983 + -1.3 354,983 + -1.2 354,983 + -0.6 354,983 + +0.6 354,983 + -0.4 354,983 + -1.8 354,983 + -0.7 354,983 + -1.1 354,983 + +0.7 354,983 + -0.6 354,983 + -1.5 354,983 + -0.3 354,983 + -0.4 354,983 + +1.2 354,983 + +1.2 354,983 + +0.4 354,983 + -1.2 354,983 + +1.0 354,983 + -0.5 354,983 + -0.3 354,983 + +0.9 354,983 + +1.3 354,984 - +0.6 354,984 - +0.2 354,984 - -0.9 354,984 - +0.0 354,984 - +0.1 354,984 - -0.8 354,984 - -0.7 354,984 - +0.6 354,984 - +0.3 354,984 - +0.6 354,984 - -0.2 354,984 - +2.2 354,984 - -1.2 354,984 - -1.5 354,984 - -0.6 354,984 - +1.0 354,984 - -0.1 354,984 - -0.2 354,984 - -0.2 354,984 - +0.6 354,984 - -1.2 354,984 - -0.2 354,984 - +0.6 354,984 - +0.2 354,984 - -1.1 354,984 - +1.2 354,984 - -2.3 354,984 - -0.8 354,984 - +0.1 354,984 - +0.1 354,984 - +1.0 354,984 - +0.0 354,984 - +0.3 354,984 - -1.1 355,230 + MPMX19_04052 0.19 +2.7 355,230 + MPMX19_04052 0.19 +1.2 355,231 - MPMX19_04052 0.19 +0.6 355,231 - MPMX19_04052 0.19 -0.6 355,352 + MPMX19_04052 0.29 +0.1 355,352 + MPMX19_04052 0.29 +0.3 355,352 + MPMX19_04052 0.29 -0.8 355,352 + MPMX19_04052 0.29 -1.4 355,353 - MPMX19_04052 0.29 +0.4 355,353 - MPMX19_04052 0.29 -1.5 355,353 - MPMX19_04052 0.29 +0.2 355,353 - MPMX19_04052 0.29 +1.4 355,353 - MPMX19_04052 0.29 +0.4 355,353 - MPMX19_04052 0.29 -1.1 355,353 - MPMX19_04052 0.29 +0.4 355,353 - MPMX19_04052 0.29 +0.9 355,353 - MPMX19_04052 0.29 -0.1 355,353 - MPMX19_04052 0.29 -0.2 355,523 + MPMX19_04052 0.42 -1.6 355,524 - MPMX19_04052 0.42 -1.4 355,524 - MPMX19_04052 0.42 +0.0 355,835 + MPMX19_04052 0.66 +1.2 355,835 + MPMX19_04052 0.66 -0.4 355,835 + MPMX19_04052 0.66 -0.2 355,835 + MPMX19_04052 0.66 +0.4 355,836 - MPMX19_04052 0.66 -1.0 355,836 - MPMX19_04052 0.66 +0.4 355,836 - MPMX19_04052 0.66 -0.0 355,836 - MPMX19_04052 0.66 -2.1 355,838 + MPMX19_04052 0.66 +0.9 355,838 + MPMX19_04052 0.66 +0.9 355,838 + MPMX19_04052 0.66 +0.4 355,838 + MPMX19_04052 0.66 -1.2 355,838 + MPMX19_04052 0.66 +0.6 355,838 + MPMX19_04052 0.66 +1.4 355,838 + MPMX19_04052 0.66 -0.0 355,838 + MPMX19_04052 0.66 -0.8 355,839 - MPMX19_04052 0.66 -0.2 355,839 - MPMX19_04052 0.66 +0.4 355,839 - MPMX19_04052 0.66 -1.2 355,839 - MPMX19_04052 0.66 -2.2 355,839 - MPMX19_04052 0.66 +0.9 355,839 - MPMX19_04052 0.66 -0.2 355,839 - MPMX19_04052 0.66 +0.2 355,839 - MPMX19_04052 0.66 -0.4 355,839 - MPMX19_04052 0.66 +0.2 355,839 - MPMX19_04052 0.66 -1.1 355,839 - MPMX19_04052 0.66 -0.5 355,839 - MPMX19_04052 0.66 -0.6 355,839 - MPMX19_04052 0.66 +1.0 355,839 - MPMX19_04052 0.66 -0.8 355,839 - MPMX19_04052 0.66 +1.7 355,850 + MPMX19_04052 0.67 -0.3 355,850 + MPMX19_04052 0.67 +0.4 355,850 + MPMX19_04052 0.67 +0.2 355,850 + MPMX19_04052 0.67 +0.2 355,850 + MPMX19_04052 0.67 -0.3 355,850 + MPMX19_04052 0.67 -0.4 355,850 + MPMX19_04052 0.67 -0.0 355,851 - MPMX19_04052 0.67 -0.3 355,851 - MPMX19_04052 0.67 +0.8 355,851 - MPMX19_04052 0.67 -0.0 355,851 - MPMX19_04052 0.67 +1.8 355,851 - MPMX19_04052 0.67 +0.6 355,851 - MPMX19_04052 0.67 +0.6 355,851 - MPMX19_04052 0.67 +0.2 355,851 - MPMX19_04052 0.67 -1.2 355,851 - MPMX19_04052 0.67 -0.4 355,851 - MPMX19_04052 0.67 -0.1 356,138 + MPMX19_04052 0.89 +0.2 356,138 + MPMX19_04052 0.89 +2.2 356,139 - MPMX19_04052 0.89 +0.0 356,139 - MPMX19_04052 0.89 +0.4 356,139 - MPMX19_04052 0.89 -0.6 356,139 - MPMX19_04052 0.89 +0.6 356,139 - MPMX19_04052 0.89 -1.4 356,139 - MPMX19_04052 0.89 -0.0 356,139 - MPMX19_04052 0.89 -1.5 356,139 - MPMX19_04052 0.89 +0.5 356,139 - MPMX19_04052 0.89 -1.4 356,139 - MPMX19_04052 0.89 -1.2 356,396 + -0.3 356,416 + -0.3 356,416 + -0.4 356,416 + -1.2 356,416 + +0.2 356,427 + +0.4 356,427 + -0.4 356,428 - -0.0 356,428 - +0.3 356,453 + +0.8 356,454 - -0.2 356,454 - +0.6 356,475 + -1.4 356,475 + -0.8 356,475 + -2.3 356,475 + +0.7 356,475 + -0.3 356,475 + -0.4 356,475 + +0.2 356,475 + +0.7 356,476 - -1.9 356,476 - -1.4 356,476 - +0.3 356,476 - +0.5 356,476 - +0.1 356,476 - +0.8 356,844 + MPMX19_04053 0.40 +0.4 356,844 + MPMX19_04053 0.40 +0.6 356,844 + MPMX19_04053 0.40 -0.9 356,845 - MPMX19_04053 0.40 +0.2 356,845 - MPMX19_04053 0.40 -0.3 356,845 - MPMX19_04053 0.40 +0.4 356,845 - MPMX19_04053 0.40 -1.3 357,033 + MPMX19_04053 0.65 -0.6 357,033 + MPMX19_04053 0.65 -1.0 357,034 - MPMX19_04053 0.65 -1.2 357,034 - MPMX19_04053 0.65 +0.6 357,034 - MPMX19_04053 0.65 -1.0 357,225 + -2.4 357,225 + -0.3 357,225 + -2.2
Or see this region's nucleotide sequence