Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04046

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04045 and MPMX19_04046 are separated by 449 nucleotidesMPMX19_04046 and MPMX19_04047 are separated by 130 nucleotides MPMX19_04045: MPMX19_04045 - Arsenate reductase, at 347,319 to 348,230 _04045 MPMX19_04046: MPMX19_04046 - hypothetical protein, at 348,680 to 349,567 _04046 MPMX19_04047: MPMX19_04047 - 2-haloacrylate reductase, at 349,698 to 350,675 _04047 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.224 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.390 kb on - strandat 348.390 kb on - strandat 348.454 kb on + strandat 348.454 kb on + strandat 348.454 kb on + strandat 348.455 kb on - strandat 348.506 kb on + strandat 348.506 kb on + strandat 349.017 kb on + strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.606 kb on + strandat 349.698 kb on - strandat 349.698 kb on - strandat 349.698 kb on - strandat 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.980 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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347,803 + MPMX19_04045 0.53 -0.7
347,803 + MPMX19_04045 0.53 -0.5
347,803 + MPMX19_04045 0.53 +0.2
347,803 + MPMX19_04045 0.53 -0.1
347,803 + MPMX19_04045 0.53 -0.6
347,803 + MPMX19_04045 0.53 +0.1
347,803 + MPMX19_04045 0.53 +0.1
347,803 + MPMX19_04045 0.53 -0.3
347,804 - MPMX19_04045 0.53 +0.1
347,804 - MPMX19_04045 0.53 -0.1
347,804 - MPMX19_04045 0.53 +0.2
347,804 - MPMX19_04045 0.53 -0.4
347,804 - MPMX19_04045 0.53 -1.2
347,804 - MPMX19_04045 0.53 -1.0
347,804 - MPMX19_04045 0.53 -0.3
347,804 - MPMX19_04045 0.53 -0.1
348,001 + MPMX19_04045 0.75 -2.9
348,001 + MPMX19_04045 0.75 -1.4
348,001 + MPMX19_04045 0.75 -2.1
348,001 + MPMX19_04045 0.75 +0.8
348,002 - MPMX19_04045 0.75 -0.3
348,002 - MPMX19_04045 0.75 -0.5
348,002 - MPMX19_04045 0.75 -1.1
348,002 - MPMX19_04045 0.75 -0.0
348,002 - MPMX19_04045 0.75 -0.2
348,002 - MPMX19_04045 0.75 +1.0
348,224 + -0.6
348,389 + +0.4
348,389 + -2.4
348,389 + -0.3
348,389 + +0.2
348,389 + -1.4
348,390 - +0.3
348,390 - -1.6
348,454 + -1.0
348,454 + -0.3
348,454 + +0.2
348,455 - -1.4
348,506 + -0.3
348,506 + +0.4
349,017 + MPMX19_04046 0.38 -0.8
349,018 - MPMX19_04046 0.38 -0.0
349,018 - MPMX19_04046 0.38 -0.2
349,059 + MPMX19_04046 0.43 +0.4
349,059 + MPMX19_04046 0.43 -0.5
349,059 + MPMX19_04046 0.43 -1.4
349,059 + MPMX19_04046 0.43 +0.6
349,074 + MPMX19_04046 0.44 -0.2
349,074 + MPMX19_04046 0.44 -0.4
349,075 - MPMX19_04046 0.44 -0.2
349,075 - MPMX19_04046 0.44 +0.6
349,075 - MPMX19_04046 0.44 -1.5
349,075 - MPMX19_04046 0.44 -0.2
349,405 - MPMX19_04046 0.82 +1.8
349,405 - MPMX19_04046 0.82 -2.3
349,405 - MPMX19_04046 0.82 -0.3
349,405 - MPMX19_04046 0.82 +0.7
349,606 + -1.3
349,698 - +0.1
349,698 - +0.8
349,698 - +2.2
349,833 + MPMX19_04047 0.14 +0.2
349,833 + MPMX19_04047 0.14 -1.5
349,833 + MPMX19_04047 0.14 -0.9
349,833 + MPMX19_04047 0.14 -0.0
349,833 + MPMX19_04047 0.14 -1.3
349,833 + MPMX19_04047 0.14 +0.1
349,833 + MPMX19_04047 0.14 -1.6
349,833 + MPMX19_04047 0.14 -0.4
349,833 + MPMX19_04047 0.14 +0.6
349,833 + MPMX19_04047 0.14 +0.3
349,833 + MPMX19_04047 0.14 -0.2
349,833 + MPMX19_04047 0.14 -0.2
349,833 + MPMX19_04047 0.14 +0.4
349,834 - MPMX19_04047 0.14 -0.3
349,834 - MPMX19_04047 0.14 -1.0
349,834 - MPMX19_04047 0.14 -0.4
349,834 - MPMX19_04047 0.14 -1.0
349,834 - MPMX19_04047 0.14 -0.3
349,834 - MPMX19_04047 0.14 +0.5
349,834 - MPMX19_04047 0.14 -1.8
349,834 - MPMX19_04047 0.14 +1.6
349,867 - MPMX19_04047 0.17 -0.9
349,867 - MPMX19_04047 0.17 -0.3
349,867 - MPMX19_04047 0.17 -2.3
349,980 + MPMX19_04047 0.29 -1.4
350,502 + MPMX19_04047 0.82 -0.4
350,502 + MPMX19_04047 0.82 -2.4
350,502 + MPMX19_04047 0.82 -0.6
350,502 + MPMX19_04047 0.82 -2.2
350,502 + MPMX19_04047 0.82 -0.8
350,502 + MPMX19_04047 0.82 -0.0
350,502 + MPMX19_04047 0.82 -0.2
350,502 + MPMX19_04047 0.82 -0.5
350,502 + MPMX19_04047 0.82 -0.4
350,502 + MPMX19_04047 0.82 +1.7
350,502 + MPMX19_04047 0.82 -0.4
350,502 + MPMX19_04047 0.82 -0.3
350,502 + MPMX19_04047 0.82 -0.4
350,502 + MPMX19_04047 0.82 +1.4
350,502 + MPMX19_04047 0.82 -0.7
350,502 - MPMX19_04047 0.82 -0.3
350,503 - MPMX19_04047 0.82 -0.8
350,503 - MPMX19_04047 0.82 -0.3
350,503 - MPMX19_04047 0.82 -1.4
350,503 - MPMX19_04047 0.82 +0.0
350,503 - MPMX19_04047 0.82 +0.2
350,503 - MPMX19_04047 0.82 +0.3
350,503 - MPMX19_04047 0.82 -1.7
350,503 - MPMX19_04047 0.82 -0.5
350,503 - MPMX19_04047 0.82 -0.2
350,503 - MPMX19_04047 0.82 -0.4
350,503 - MPMX19_04047 0.82 -1.0
350,523 + MPMX19_04047 0.84 -2.0
350,523 + MPMX19_04047 0.84 +0.4
350,523 + MPMX19_04047 0.84 +0.2
350,523 + MPMX19_04047 0.84 +2.0
350,523 + MPMX19_04047 0.84 -0.4
350,523 + MPMX19_04047 0.84 +0.4
350,523 + MPMX19_04047 0.84 -0.0
350,523 + MPMX19_04047 0.84 +0.3
350,523 + MPMX19_04047 0.84 -2.2
350,523 + MPMX19_04047 0.84 +0.7
350,523 + MPMX19_04047 0.84 -0.4
350,524 - MPMX19_04047 0.84 +0.2
350,524 - MPMX19_04047 0.84 -1.2
350,524 - MPMX19_04047 0.84 -0.4
350,524 - MPMX19_04047 0.84 -1.1
350,524 - MPMX19_04047 0.84 -0.8
350,524 - MPMX19_04047 0.84 -1.4
350,524 - MPMX19_04047 0.84 +0.2

Or see this region's nucleotide sequence