Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04011 and MPMX19_04012 are separated by 33 nucleotides MPMX19_04012 and MPMX19_04013 are separated by 84 nucleotides MPMX19_04013 and MPMX19_04014 are separated by 208 nucleotides
MPMX19_04011: MPMX19_04011 - Zinc-type alcohol dehydrogenase-like protein, at 307,493 to 308,443
_04011
MPMX19_04012: MPMX19_04012 - hypothetical protein, at 308,477 to 308,902
_04012
MPMX19_04013: MPMX19_04013 - hypothetical protein, at 308,987 to 309,466
_04013
MPMX19_04014: MPMX19_04014 - hypothetical protein, at 309,675 to 310,625
_04014
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.075 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.265 kb on - strand, within MPMX19_04011 at 308.416 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.494 kb on + strand at 308.897 kb on + strand at 308.897 kb on + strand at 308.898 kb on - strand at 308.898 kb on - strand at 308.909 kb on + strand at 308.909 kb on + strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.260 kb on + strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.525 kb on + strand at 309.652 kb on - strand at 309.701 kb on + strand at 309.786 kb on - strand, within MPMX19_04014 at 309.786 kb on - strand, within MPMX19_04014 at 309.825 kb on - strand, within MPMX19_04014 at 309.825 kb on - strand, within MPMX19_04014 at 309.862 kb on + strand, within MPMX19_04014 at 309.863 kb on - strand, within MPMX19_04014 at 309.863 kb on - strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.900 kb on + strand, within MPMX19_04014 at 309.900 kb on + strand, within MPMX19_04014 at 309.901 kb on - strand, within MPMX19_04014 at 309.903 kb on - strand, within MPMX19_04014 at 309.945 kb on + strand, within MPMX19_04014 at 309.945 kb on + strand, within MPMX19_04014 at 309.983 kb on + strand, within MPMX19_04014 at 309.985 kb on + strand, within MPMX19_04014 at 309.985 kb on + strand, within MPMX19_04014 at 309.986 kb on - strand, within MPMX19_04014 at 309.986 kb on - strand, within MPMX19_04014 at 310.077 kb on - strand, within MPMX19_04014 at 310.103 kb on - strand, within MPMX19_04014 at 310.103 kb on - strand, within MPMX19_04014 at 310.166 kb on + strand, within MPMX19_04014 at 310.167 kb on - strand, within MPMX19_04014 at 310.372 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.417 kb on - strand, within MPMX19_04014 at 310.417 kb on - strand, within MPMX19_04014 at 310.445 kb on + strand, within MPMX19_04014
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 308,075 + MPMX19_04011 0.61 -1.0 308,243 + MPMX19_04011 0.79 -1.2 308,243 + MPMX19_04011 0.79 -0.7 308,243 + MPMX19_04011 0.79 +0.8 308,243 + MPMX19_04011 0.79 -1.5 308,243 + MPMX19_04011 0.79 -0.3 308,243 + MPMX19_04011 0.79 -0.4 308,243 + MPMX19_04011 0.79 -0.4 308,243 + MPMX19_04011 0.79 -0.5 308,243 + MPMX19_04011 0.79 -2.4 308,243 + MPMX19_04011 0.79 +1.2 308,243 + MPMX19_04011 0.79 -1.3 308,243 + MPMX19_04011 0.79 -0.7 308,243 + MPMX19_04011 0.79 -2.5 308,243 + MPMX19_04011 0.79 -0.8 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 -1.9 308,244 - MPMX19_04011 0.79 -0.8 308,244 - MPMX19_04011 0.79 -1.3 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 -0.1 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 +0.3 308,244 - MPMX19_04011 0.79 -1.2 308,244 - MPMX19_04011 0.79 -2.9 308,244 - MPMX19_04011 0.79 -1.5 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -2.8 308,264 + MPMX19_04011 0.81 -0.3 308,264 + MPMX19_04011 0.81 -0.5 308,265 - MPMX19_04011 0.81 -0.5 308,416 + +0.9 308,483 + +0.4 308,483 + -0.6 308,483 + -0.8 308,483 + +1.6 308,483 + -0.1 308,483 + -1.7 308,483 + -0.5 308,483 + -1.8 308,483 + -0.2 308,483 + -0.4 308,483 + -0.5 308,483 + -0.5 308,483 + +0.7 308,483 + -1.5 308,483 + -0.8 308,483 + -0.4 308,483 + -0.7 308,483 + -1.0 308,483 + -1.1 308,483 + -0.4 308,483 + -0.7 308,483 + -0.3 308,483 + -0.8 308,483 + +0.8 308,483 + -0.4 308,483 + -0.2 308,483 + -1.0 308,484 - -0.1 308,484 - -1.3 308,484 - -0.7 308,484 - -2.0 308,484 - +0.6 308,484 - -1.8 308,484 - -0.7 308,484 - -1.5 308,484 - -2.2 308,484 - -0.8 308,484 - +0.3 308,484 - -0.1 308,484 - -2.2 308,484 - -1.0 308,484 - -0.9 308,484 - +0.7 308,484 - -1.4 308,484 - -0.5 308,484 - -0.4 308,485 + +1.2 308,485 + +0.2 308,485 + -0.3 308,485 + -0.6 308,485 + +0.3 308,485 + -0.5 308,485 + +0.2 308,485 + +1.2 308,485 + +0.2 308,485 + -0.5 308,485 + -0.4 308,485 + -0.4 308,485 + -1.1 308,485 + -0.2 308,485 + +1.4 308,486 - -0.8 308,486 - -0.2 308,486 - -0.8 308,486 - -2.7 308,486 - +0.7 308,486 - +1.4 308,486 - -1.9 308,486 - -0.5 308,486 - -0.0 308,486 - +0.7 308,486 - +0.2 308,486 - -0.5 308,486 - -0.0 308,486 - -0.5 308,486 - +0.7 308,486 - -1.2 308,486 - +0.2 308,494 + -0.4 308,897 + +0.4 308,897 + +0.1 308,898 - -1.2 308,898 - +0.8 308,909 + +0.3 308,909 + -1.1 308,910 - -0.4 308,910 - +0.2 308,910 - -0.3 308,910 - +1.2 308,910 - -0.3 308,910 - +1.9 308,910 - -1.8 308,910 - -1.4 308,910 - -0.4 308,910 - -0.8 308,910 - -2.3 308,910 - -0.3 308,910 - -1.7 309,053 + MPMX19_04013 0.14 -0.9 309,053 + MPMX19_04013 0.14 -0.7 309,053 + MPMX19_04013 0.14 -2.0 309,053 + MPMX19_04013 0.14 -1.2 309,054 - MPMX19_04013 0.14 -0.7 309,054 - MPMX19_04013 0.14 +0.6 309,054 - MPMX19_04013 0.14 -0.7 309,260 + MPMX19_04013 0.57 -0.9 309,261 - MPMX19_04013 0.57 -1.3 309,261 - MPMX19_04013 0.57 -1.0 309,525 + -0.2 309,652 - -1.3 309,701 + -1.0 309,786 - MPMX19_04014 0.12 +0.6 309,786 - MPMX19_04014 0.12 -0.2 309,825 - MPMX19_04014 0.16 -0.8 309,825 - MPMX19_04014 0.16 +0.6 309,862 + MPMX19_04014 0.20 +0.2 309,863 - MPMX19_04014 0.20 -0.2 309,863 - MPMX19_04014 0.20 -0.3 309,896 + MPMX19_04014 0.23 +0.6 309,896 + MPMX19_04014 0.23 +0.6 309,896 + MPMX19_04014 0.23 +0.8 309,900 + MPMX19_04014 0.24 -1.0 309,900 + MPMX19_04014 0.24 -1.3 309,901 - MPMX19_04014 0.24 -1.0 309,903 - MPMX19_04014 0.24 -1.2 309,945 + MPMX19_04014 0.28 -1.2 309,945 + MPMX19_04014 0.28 +0.8 309,983 + MPMX19_04014 0.32 -1.0 309,985 + MPMX19_04014 0.33 -0.8 309,985 + MPMX19_04014 0.33 -1.0 309,986 - MPMX19_04014 0.33 -0.5 309,986 - MPMX19_04014 0.33 +0.1 310,077 - MPMX19_04014 0.42 -0.7 310,103 - MPMX19_04014 0.45 +0.2 310,103 - MPMX19_04014 0.45 -1.0 310,166 + MPMX19_04014 0.52 -0.9 310,167 - MPMX19_04014 0.52 -1.2 310,372 + MPMX19_04014 0.73 +0.6 310,407 + MPMX19_04014 0.77 -1.2 310,407 + MPMX19_04014 0.77 -0.0 310,407 + MPMX19_04014 0.77 -1.2 310,407 + MPMX19_04014 0.77 -0.4 310,408 - MPMX19_04014 0.77 +0.2 310,408 - MPMX19_04014 0.77 -1.8 310,408 - MPMX19_04014 0.77 +0.2 310,408 - MPMX19_04014 0.77 +0.6 310,411 + MPMX19_04014 0.77 -0.5 310,411 + MPMX19_04014 0.77 -0.4 310,411 + MPMX19_04014 0.77 -0.4 310,411 + MPMX19_04014 0.77 +0.6 310,411 + MPMX19_04014 0.77 +0.6 310,411 + MPMX19_04014 0.77 -1.0 310,411 + MPMX19_04014 0.77 +0.2 310,411 + MPMX19_04014 0.77 +2.2 310,411 + MPMX19_04014 0.77 +0.2 310,411 + MPMX19_04014 0.77 -0.8 310,411 + MPMX19_04014 0.77 -0.4 310,412 - MPMX19_04014 0.77 +0.6 310,412 - MPMX19_04014 0.77 +1.4 310,412 - MPMX19_04014 0.77 -1.3 310,412 - MPMX19_04014 0.77 +0.6 310,412 - MPMX19_04014 0.77 +0.3 310,412 - MPMX19_04014 0.77 +0.2 310,412 - MPMX19_04014 0.77 -0.0 310,412 - MPMX19_04014 0.77 -0.8 310,412 - MPMX19_04014 0.77 +0.3 310,412 - MPMX19_04014 0.77 +0.2 310,412 - MPMX19_04014 0.77 +1.3 310,416 + MPMX19_04014 0.78 +0.2 310,416 + MPMX19_04014 0.78 +1.0 310,416 + MPMX19_04014 0.78 +1.2 310,416 + MPMX19_04014 0.78 -1.4 310,417 - MPMX19_04014 0.78 -1.4 310,417 - MPMX19_04014 0.78 -1.0 310,445 + MPMX19_04014 0.81 -1.5
Or see this region's nucleotide sequence