Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04010

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04008 and MPMX19_04009 overlap by 4 nucleotidesMPMX19_04009 and MPMX19_04010 are separated by 11 nucleotidesMPMX19_04010 and MPMX19_04011 are separated by 91 nucleotides MPMX19_04008: MPMX19_04008 - Beta-peptidyl aminopeptidase BapA, at 304,479 to 305,588 _04008 MPMX19_04009: MPMX19_04009 - D-aminopeptidase, at 305,585 to 306,418 _04009 MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401 _04010 MPMX19_04011: MPMX19_04011 - Zinc-type alcohol dehydrogenase-like protein, at 307,493 to 308,443 _04011 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.666 kb on + strandat 305.667 kb on - strandat 305.667 kb on - strandat 305.912 kb on + strand, within MPMX19_04009at 305.912 kb on + strand, within MPMX19_04009at 305.913 kb on - strand, within MPMX19_04009at 305.996 kb on + strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.871 kb on + strand, within MPMX19_04010at 306.871 kb on + strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 307.330 kb on + strandat 307.331 kb on - strandat 307.331 kb on - strandat 307.679 kb on + strand, within MPMX19_04011at 307.679 kb on + strand, within MPMX19_04011at 307.679 kb on + strand, within MPMX19_04011at 307.680 kb on - strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.751 kb on + strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.752 kb on - strand, within MPMX19_04011at 307.787 kb on + strand, within MPMX19_04011at 307.787 kb on + strand, within MPMX19_04011at 307.787 kb on + strand, within MPMX19_04011at 307.787 kb on + strand, within MPMX19_04011at 307.787 kb on + strand, within MPMX19_04011at 307.788 kb on - strand, within MPMX19_04011at 307.788 kb on - strand, within MPMX19_04011at 307.788 kb on - strand, within MPMX19_04011at 307.788 kb on - strand, within MPMX19_04011at 307.788 kb on - strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.796 kb on + strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 307.797 kb on - strand, within MPMX19_04011at 308.075 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.243 kb on + strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.244 kb on - strand, within MPMX19_04011at 308.264 kb on + strand, within MPMX19_04011at 308.264 kb on + strand, within MPMX19_04011at 308.265 kb on - strand, within MPMX19_04011

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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305,563 + -0.7
305,563 + -1.7
305,563 + -2.4
305,563 + -1.2
305,594 + +0.9
305,594 + +0.7
305,594 + -1.0
305,594 + -1.0
305,594 + -0.9
305,594 + -0.4
305,594 + -1.5
305,594 + -1.7
305,594 + +1.3
305,594 + -0.3
305,594 + -1.4
305,594 + +0.7
305,594 + -0.2
305,594 + +0.2
305,594 + -1.3
305,595 - -1.0
305,595 - +0.1
305,595 - -0.6
305,595 - -1.0
305,595 - -1.5
305,666 + -1.3
305,667 - +1.2
305,667 - -0.1
305,912 + MPMX19_04009 0.39 -0.2
305,912 + MPMX19_04009 0.39 -0.0
305,913 - MPMX19_04009 0.39 -1.3
305,996 + MPMX19_04009 0.49 +0.6
305,997 - MPMX19_04009 0.49 -0.7
305,997 - MPMX19_04009 0.49 +0.6
305,997 - MPMX19_04009 0.49 -1.8
305,997 - MPMX19_04009 0.49 -0.4
306,005 + MPMX19_04009 0.50 -2.4
306,005 + MPMX19_04009 0.50 -1.0
306,005 + MPMX19_04009 0.50 -1.9
306,005 + MPMX19_04009 0.50 +0.4
306,005 + MPMX19_04009 0.50 -0.2
306,005 + MPMX19_04009 0.50 -1.0
306,005 + MPMX19_04009 0.50 +0.8
306,005 + MPMX19_04009 0.50 -0.4
306,006 - MPMX19_04009 0.50 -1.2
306,006 - MPMX19_04009 0.50 -0.3
306,006 - MPMX19_04009 0.50 -0.4
306,871 + MPMX19_04010 0.45 -1.3
306,871 + MPMX19_04010 0.45 -0.8
306,872 - MPMX19_04010 0.45 -0.7
306,872 - MPMX19_04010 0.45 -0.5
306,872 - MPMX19_04010 0.45 -0.7
306,872 - MPMX19_04010 0.45 -1.7
307,330 + +1.3
307,331 - -0.7
307,331 - +0.3
307,679 + MPMX19_04011 0.20 -0.3
307,679 + MPMX19_04011 0.20 -0.1
307,679 + MPMX19_04011 0.20 -2.0
307,680 - MPMX19_04011 0.20 -0.7
307,751 + MPMX19_04011 0.27 -0.8
307,751 + MPMX19_04011 0.27 +0.2
307,751 + MPMX19_04011 0.27 -0.3
307,751 + MPMX19_04011 0.27 +1.2
307,751 + MPMX19_04011 0.27 -0.6
307,751 + MPMX19_04011 0.27 +0.3
307,751 + MPMX19_04011 0.27 -0.5
307,751 + MPMX19_04011 0.27 -1.0
307,751 + MPMX19_04011 0.27 -0.6
307,751 + MPMX19_04011 0.27 -1.8
307,751 + MPMX19_04011 0.27 -1.5
307,752 - MPMX19_04011 0.27 -2.3
307,752 - MPMX19_04011 0.27 +0.6
307,752 - MPMX19_04011 0.27 -1.5
307,752 - MPMX19_04011 0.27 -1.3
307,752 - MPMX19_04011 0.27 +0.2
307,752 - MPMX19_04011 0.27 +0.6
307,752 - MPMX19_04011 0.27 -2.1
307,752 - MPMX19_04011 0.27 -1.8
307,752 - MPMX19_04011 0.27 +0.6
307,752 - MPMX19_04011 0.27 -1.0
307,752 - MPMX19_04011 0.27 +0.8
307,752 - MPMX19_04011 0.27 -2.2
307,752 - MPMX19_04011 0.27 -1.2
307,752 - MPMX19_04011 0.27 +0.6
307,752 - MPMX19_04011 0.27 -1.2
307,787 + MPMX19_04011 0.31 +0.2
307,787 + MPMX19_04011 0.31 +0.7
307,787 + MPMX19_04011 0.31 -1.8
307,787 + MPMX19_04011 0.31 -0.5
307,787 + MPMX19_04011 0.31 +0.3
307,788 - MPMX19_04011 0.31 -0.6
307,788 - MPMX19_04011 0.31 -0.8
307,788 - MPMX19_04011 0.31 -1.2
307,788 - MPMX19_04011 0.31 +0.0
307,788 - MPMX19_04011 0.31 -0.4
307,796 + MPMX19_04011 0.32 -0.4
307,796 + MPMX19_04011 0.32 -3.1
307,796 + MPMX19_04011 0.32 -0.4
307,796 + MPMX19_04011 0.32 +2.2
307,796 + MPMX19_04011 0.32 +0.5
307,796 + MPMX19_04011 0.32 -0.2
307,796 + MPMX19_04011 0.32 -0.6
307,797 - MPMX19_04011 0.32 -0.0
307,797 - MPMX19_04011 0.32 +0.6
307,797 - MPMX19_04011 0.32 +0.5
307,797 - MPMX19_04011 0.32 -0.6
307,797 - MPMX19_04011 0.32 -0.4
307,797 - MPMX19_04011 0.32 +1.4
307,797 - MPMX19_04011 0.32 +0.8
307,797 - MPMX19_04011 0.32 -0.9
307,797 - MPMX19_04011 0.32 -1.3
307,797 - MPMX19_04011 0.32 +0.6
308,075 + MPMX19_04011 0.61 -1.0
308,243 + MPMX19_04011 0.79 -1.2
308,243 + MPMX19_04011 0.79 -0.7
308,243 + MPMX19_04011 0.79 +0.8
308,243 + MPMX19_04011 0.79 -1.5
308,243 + MPMX19_04011 0.79 -0.3
308,243 + MPMX19_04011 0.79 -0.4
308,243 + MPMX19_04011 0.79 -0.4
308,243 + MPMX19_04011 0.79 -0.5
308,243 + MPMX19_04011 0.79 -2.4
308,243 + MPMX19_04011 0.79 +1.2
308,243 + MPMX19_04011 0.79 -1.3
308,243 + MPMX19_04011 0.79 -0.7
308,243 + MPMX19_04011 0.79 -2.5
308,243 + MPMX19_04011 0.79 -0.8
308,244 - MPMX19_04011 0.79 -0.2
308,244 - MPMX19_04011 0.79 -0.4
308,244 - MPMX19_04011 0.79 -1.9
308,244 - MPMX19_04011 0.79 -0.8
308,244 - MPMX19_04011 0.79 -1.3
308,244 - MPMX19_04011 0.79 -1.0
308,244 - MPMX19_04011 0.79 -0.4
308,244 - MPMX19_04011 0.79 -0.1
308,244 - MPMX19_04011 0.79 -0.2
308,244 - MPMX19_04011 0.79 -0.2
308,244 - MPMX19_04011 0.79 +0.3
308,244 - MPMX19_04011 0.79 -1.2
308,244 - MPMX19_04011 0.79 -2.9
308,244 - MPMX19_04011 0.79 -1.5
308,244 - MPMX19_04011 0.79 -0.3
308,244 - MPMX19_04011 0.79 -1.0
308,244 - MPMX19_04011 0.79 -2.8
308,264 + MPMX19_04011 0.81 -0.3
308,264 + MPMX19_04011 0.81 -0.5
308,265 - MPMX19_04011 0.81 -0.5

Or see this region's nucleotide sequence