Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03943

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03942 and MPMX19_03943 are separated by 6 nucleotidesMPMX19_03943 and MPMX19_03944 are separated by 703 nucleotides MPMX19_03942: MPMX19_03942 - hypothetical protein, at 224,934 to 227,627 _03942 MPMX19_03943: MPMX19_03943 - hypothetical protein, at 227,634 to 228,428 _03943 MPMX19_03944: MPMX19_03944 - hypothetical protein, at 229,132 to 229,866 _03944 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.674 kb on + strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.675 kb on - strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.713 kb on + strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.714 kb on - strand, within MPMX19_03942at 226.777 kb on - strand, within MPMX19_03942at 226.777 kb on - strand, within MPMX19_03942at 226.801 kb on - strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.836 kb on + strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 226.837 kb on - strand, within MPMX19_03942at 227.167 kb on + strand, within MPMX19_03942at 227.167 kb on + strand, within MPMX19_03942at 227.167 kb on + strand, within MPMX19_03942at 227.167 kb on + strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.168 kb on - strand, within MPMX19_03942at 227.336 kb on - strand, within MPMX19_03942at 227.343 kb on + strand, within MPMX19_03942at 227.344 kb on - strand, within MPMX19_03942at 227.446 kb on - strandat 227.446 kb on - strandat 227.493 kb on - strandat 227.659 kb on + strandat 227.665 kb on + strandat 227.672 kb on + strandat 227.672 kb on + strandat 227.676 kb on + strandat 227.676 kb on + strandat 227.677 kb on - strandat 227.677 kb on - strandat 227.677 kb on - strandat 227.679 kb on - strandat 227.763 kb on + strand, within MPMX19_03943at 227.763 kb on + strand, within MPMX19_03943at 227.763 kb on + strand, within MPMX19_03943at 227.763 kb on + strand, within MPMX19_03943at 227.764 kb on - strand, within MPMX19_03943at 227.764 kb on - strand, within MPMX19_03943at 227.764 kb on - strand, within MPMX19_03943at 227.786 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.913 kb on + strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.914 kb on - strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.973 kb on + strand, within MPMX19_03943at 227.974 kb on - strand, within MPMX19_03943at 227.974 kb on - strand, within MPMX19_03943at 227.974 kb on - strand, within MPMX19_03943at 228.042 kb on + strand, within MPMX19_03943at 228.042 kb on + strand, within MPMX19_03943at 228.042 kb on + strand, within MPMX19_03943at 228.042 kb on + strand, within MPMX19_03943at 228.042 kb on + strand, within MPMX19_03943at 228.043 kb on - strand, within MPMX19_03943at 228.043 kb on - strand, within MPMX19_03943at 228.043 kb on - strand, within MPMX19_03943at 228.043 kb on - strand, within MPMX19_03943at 228.043 kb on - strand, within MPMX19_03943at 228.156 kb on + strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.804 kb on + strandat 228.934 kb on + strandat 228.987 kb on + strandat 228.988 kb on - strandat 229.008 kb on - strandat 229.061 kb on + strandat 229.061 kb on + strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.086 kb on + strandat 229.087 kb on - strandat 229.087 kb on - strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.177 kb on + strandat 229.178 kb on - strandat 229.178 kb on - strandat 229.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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226,674 + MPMX19_03942 0.65 +0.1
226,674 + MPMX19_03942 0.65 -0.1
226,674 + MPMX19_03942 0.65 -1.4
226,674 + MPMX19_03942 0.65 -0.6
226,674 + MPMX19_03942 0.65 -0.6
226,674 + MPMX19_03942 0.65 -1.6
226,674 + MPMX19_03942 0.65 -0.6
226,674 + MPMX19_03942 0.65 +0.6
226,674 + MPMX19_03942 0.65 -0.0
226,675 - MPMX19_03942 0.65 -1.9
226,675 - MPMX19_03942 0.65 -0.2
226,675 - MPMX19_03942 0.65 -2.2
226,675 - MPMX19_03942 0.65 -0.4
226,675 - MPMX19_03942 0.65 -0.3
226,675 - MPMX19_03942 0.65 -0.6
226,675 - MPMX19_03942 0.65 +0.8
226,675 - MPMX19_03942 0.65 +0.6
226,675 - MPMX19_03942 0.65 -1.2
226,675 - MPMX19_03942 0.65 +0.6
226,675 - MPMX19_03942 0.65 -0.6
226,675 - MPMX19_03942 0.65 -0.1
226,675 - MPMX19_03942 0.65 -0.2
226,713 + MPMX19_03942 0.66 +0.6
226,713 + MPMX19_03942 0.66 +0.4
226,713 + MPMX19_03942 0.66 -1.2
226,713 + MPMX19_03942 0.66 -0.6
226,713 + MPMX19_03942 0.66 +1.2
226,713 + MPMX19_03942 0.66 +0.5
226,713 + MPMX19_03942 0.66 +0.8
226,713 + MPMX19_03942 0.66 -0.4
226,713 + MPMX19_03942 0.66 +1.2
226,713 + MPMX19_03942 0.66 -0.3
226,714 - MPMX19_03942 0.66 -1.8
226,714 - MPMX19_03942 0.66 -0.3
226,714 - MPMX19_03942 0.66 +0.4
226,714 - MPMX19_03942 0.66 -0.9
226,714 - MPMX19_03942 0.66 +0.3
226,714 - MPMX19_03942 0.66 -1.2
226,714 - MPMX19_03942 0.66 -1.2
226,714 - MPMX19_03942 0.66 +1.8
226,714 - MPMX19_03942 0.66 -1.5
226,714 - MPMX19_03942 0.66 -1.3
226,714 - MPMX19_03942 0.66 +0.8
226,714 - MPMX19_03942 0.66 +0.6
226,714 - MPMX19_03942 0.66 -1.2
226,714 - MPMX19_03942 0.66 -0.0
226,714 - MPMX19_03942 0.66 -0.7
226,714 - MPMX19_03942 0.66 -1.3
226,714 - MPMX19_03942 0.66 +0.3
226,714 - MPMX19_03942 0.66 +1.2
226,714 - MPMX19_03942 0.66 +0.7
226,714 - MPMX19_03942 0.66 -0.4
226,777 - MPMX19_03942 0.68 -0.2
226,777 - MPMX19_03942 0.68 -1.3
226,801 - MPMX19_03942 0.69 +0.9
226,836 + MPMX19_03942 0.71 -0.3
226,836 + MPMX19_03942 0.71 -0.2
226,836 + MPMX19_03942 0.71 -1.3
226,836 + MPMX19_03942 0.71 +0.3
226,836 + MPMX19_03942 0.71 -0.9
226,836 + MPMX19_03942 0.71 -0.8
226,836 + MPMX19_03942 0.71 -0.3
226,836 + MPMX19_03942 0.71 -0.6
226,836 + MPMX19_03942 0.71 +0.6
226,836 + MPMX19_03942 0.71 -0.9
226,836 + MPMX19_03942 0.71 -2.4
226,836 + MPMX19_03942 0.71 -1.2
226,836 + MPMX19_03942 0.71 -0.3
226,837 - MPMX19_03942 0.71 +0.0
226,837 - MPMX19_03942 0.71 +0.4
226,837 - MPMX19_03942 0.71 -1.3
226,837 - MPMX19_03942 0.71 -1.3
226,837 - MPMX19_03942 0.71 +0.6
226,837 - MPMX19_03942 0.71 +0.4
226,837 - MPMX19_03942 0.71 +0.8
226,837 - MPMX19_03942 0.71 -1.6
226,837 - MPMX19_03942 0.71 -0.7
226,837 - MPMX19_03942 0.71 +0.2
226,837 - MPMX19_03942 0.71 +0.2
226,837 - MPMX19_03942 0.71 -1.2
226,837 - MPMX19_03942 0.71 +0.8
226,837 - MPMX19_03942 0.71 -0.3
227,167 + MPMX19_03942 0.83 +1.7
227,167 + MPMX19_03942 0.83 +0.6
227,167 + MPMX19_03942 0.83 +0.2
227,167 + MPMX19_03942 0.83 -2.0
227,168 - MPMX19_03942 0.83 -0.4
227,168 - MPMX19_03942 0.83 -1.2
227,168 - MPMX19_03942 0.83 -1.4
227,168 - MPMX19_03942 0.83 -1.1
227,168 - MPMX19_03942 0.83 -0.8
227,168 - MPMX19_03942 0.83 +0.4
227,168 - MPMX19_03942 0.83 -0.0
227,168 - MPMX19_03942 0.83 +0.4
227,336 - MPMX19_03942 0.89 +0.6
227,343 + MPMX19_03942 0.89 -0.3
227,344 - MPMX19_03942 0.89 -0.2
227,446 - -0.2
227,446 - +0.4
227,493 - -1.2
227,659 + -1.2
227,665 + -1.7
227,672 + +0.5
227,672 + -0.4
227,676 + +0.2
227,676 + -0.7
227,677 - -1.0
227,677 - +1.2
227,677 - +0.2
227,679 - +1.2
227,763 + MPMX19_03943 0.16 -1.3
227,763 + MPMX19_03943 0.16 -0.5
227,763 + MPMX19_03943 0.16 +0.2
227,763 + MPMX19_03943 0.16 -0.7
227,764 - MPMX19_03943 0.16 -0.4
227,764 - MPMX19_03943 0.16 -1.3
227,764 - MPMX19_03943 0.16 +0.6
227,786 + MPMX19_03943 0.19 +0.1
227,913 + MPMX19_03943 0.35 -2.4
227,913 + MPMX19_03943 0.35 -0.8
227,913 + MPMX19_03943 0.35 +1.3
227,913 + MPMX19_03943 0.35 +0.2
227,913 + MPMX19_03943 0.35 +0.9
227,913 + MPMX19_03943 0.35 -0.5
227,913 + MPMX19_03943 0.35 +0.8
227,913 + MPMX19_03943 0.35 -0.2
227,914 - MPMX19_03943 0.35 -1.3
227,914 - MPMX19_03943 0.35 -0.8
227,914 - MPMX19_03943 0.35 +0.5
227,914 - MPMX19_03943 0.35 -1.0
227,914 - MPMX19_03943 0.35 -1.2
227,914 - MPMX19_03943 0.35 -0.7
227,914 - MPMX19_03943 0.35 -0.2
227,973 + MPMX19_03943 0.43 +0.6
227,973 + MPMX19_03943 0.43 -1.2
227,973 + MPMX19_03943 0.43 -0.2
227,973 + MPMX19_03943 0.43 -0.3
227,973 + MPMX19_03943 0.43 -0.8
227,973 + MPMX19_03943 0.43 -1.3
227,973 + MPMX19_03943 0.43 +1.4
227,973 + MPMX19_03943 0.43 -0.2
227,973 + MPMX19_03943 0.43 -0.4
227,973 + MPMX19_03943 0.43 -0.7
227,973 + MPMX19_03943 0.43 -1.6
227,973 + MPMX19_03943 0.43 +0.2
227,973 + MPMX19_03943 0.43 -0.2
227,973 + MPMX19_03943 0.43 +0.4
227,974 - MPMX19_03943 0.43 -1.1
227,974 - MPMX19_03943 0.43 +0.2
227,974 - MPMX19_03943 0.43 -0.3
228,042 + MPMX19_03943 0.51 +0.2
228,042 + MPMX19_03943 0.51 -0.4
228,042 + MPMX19_03943 0.51 -0.6
228,042 + MPMX19_03943 0.51 -0.4
228,042 + MPMX19_03943 0.51 -1.0
228,043 - MPMX19_03943 0.51 -0.8
228,043 - MPMX19_03943 0.51 -0.4
228,043 - MPMX19_03943 0.51 +3.2
228,043 - MPMX19_03943 0.51 -1.7
228,043 - MPMX19_03943 0.51 -0.5
228,156 + MPMX19_03943 0.66 -0.3
228,157 - MPMX19_03943 0.66 +0.2
228,157 - MPMX19_03943 0.66 +2.2
228,157 - MPMX19_03943 0.66 -0.6
228,417 + -1.2
228,417 + +0.2
228,417 + -0.5
228,417 + +1.8
228,417 + -0.4
228,418 - +1.4
228,418 - -1.4
228,418 - +1.4
228,418 - -0.2
228,617 + -0.4
228,617 + -0.2
228,617 + -1.0
228,617 + -0.3
228,617 + +0.7
228,618 - -0.2
228,618 - +0.1
228,804 + -1.6
228,934 + +0.9
228,987 + +0.2
228,988 - +0.3
229,008 - +1.6
229,061 + -0.6
229,061 + +1.3
229,062 - +0.0
229,062 - -0.4
229,062 - -1.2
229,062 - -0.5
229,062 - -1.5
229,062 - -0.9
229,086 + -0.6
229,087 - -0.4
229,087 - -1.3
229,095 + +1.6
229,095 + +0.6
229,095 + +0.2
229,095 + +0.6
229,096 - -0.8
229,096 - -1.6
229,096 - -1.0
229,096 - +0.4
229,096 - -0.0
229,177 + -0.3
229,178 - +0.2
229,178 - -0.5
229,178 - -0.6

Or see this region's nucleotide sequence