Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03937 and MPMX19_03938 are separated by 42 nucleotides MPMX19_03938 and MPMX19_03939 are separated by 11 nucleotides MPMX19_03939 and MPMX19_03940 are separated by 5 nucleotides
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
MPMX19_03938: MPMX19_03938 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 219,189 to 220,796
_03938
MPMX19_03939: MPMX19_03939 - Enoyl-CoA-hydratase, at 220,808 to 221,590
_03939
MPMX19_03940: MPMX19_03940 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 221,596 to 223,599
_03940
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.145 kb on - strand at 219.145 kb on - strand at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.156 kb on - strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.437 kb on + strand, within MPMX19_03938 at 220.438 kb on - strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.666 kb on - strand at 220.666 kb on - strand at 220.666 kb on - strand at 221.249 kb on + strand, within MPMX19_03939 at 221.249 kb on + strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.289 kb on - strand, within MPMX19_03939 at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 218,211 + MPMX19_03937 0.17 -0.2 218,211 + MPMX19_03937 0.17 +1.2 218,211 + MPMX19_03937 0.17 -0.3 218,211 + MPMX19_03937 0.17 -1.1 218,212 - MPMX19_03937 0.18 -0.4 218,212 - MPMX19_03937 0.18 +1.0 218,583 + MPMX19_03937 0.50 +0.1 218,701 - MPMX19_03937 0.61 +0.8 218,701 - MPMX19_03937 0.61 +1.8 218,797 - MPMX19_03937 0.69 +1.0 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 +0.1 219,033 + +0.8 219,033 + -0.3 219,033 + +0.8 219,033 + +0.3 219,033 + -1.9 219,033 + -1.4 219,033 + -1.2 219,033 + -1.2 219,033 + -1.5 219,034 - -1.6 219,034 - -0.5 219,034 - -0.9 219,034 - -0.9 219,034 - +0.6 219,063 + +0.8 219,063 + -0.7 219,063 + +1.4 219,063 + +1.2 219,063 + +0.6 219,064 - -0.2 219,064 - -0.8 219,064 - -1.1 219,064 - +0.8 219,090 + -0.7 219,090 + +0.2 219,090 + +0.6 219,090 + +0.7 219,090 + +0.6 219,090 + +0.2 219,090 + -1.6 219,090 + +0.8 219,090 + +0.2 219,091 - +1.2 219,091 - -0.2 219,091 - +0.6 219,091 - +0.6 219,091 - -1.5 219,091 - -0.1 219,091 - +0.1 219,091 - -0.3 219,091 - -1.5 219,144 + -0.7 219,144 + -0.4 219,144 + +1.4 219,144 + +0.3 219,145 - -1.0 219,145 - -1.2 219,432 + MPMX19_03938 0.15 -1.3 219,432 + MPMX19_03938 0.15 -1.0 219,432 + MPMX19_03938 0.15 -0.3 219,432 + MPMX19_03938 0.15 -0.7 219,432 + MPMX19_03938 0.15 +0.2 219,432 + MPMX19_03938 0.15 +0.0 219,433 - MPMX19_03938 0.15 -0.8 219,433 - MPMX19_03938 0.15 +0.6 219,537 + MPMX19_03938 0.22 +1.0 219,537 + MPMX19_03938 0.22 -1.1 219,537 + MPMX19_03938 0.22 -2.3 219,537 + MPMX19_03938 0.22 -0.3 219,537 + MPMX19_03938 0.22 -0.6 219,537 + MPMX19_03938 0.22 +1.2 219,537 + MPMX19_03938 0.22 -2.4 219,537 + MPMX19_03938 0.22 -0.4 219,537 + MPMX19_03938 0.22 -2.5 219,537 + MPMX19_03938 0.22 -0.0 219,537 + MPMX19_03938 0.22 -1.2 219,537 + MPMX19_03938 0.22 -1.3 219,537 + MPMX19_03938 0.22 -0.0 219,537 + MPMX19_03938 0.22 -0.5 219,538 - MPMX19_03938 0.22 -0.8 219,538 - MPMX19_03938 0.22 -1.4 219,538 - MPMX19_03938 0.22 +1.9 219,538 - MPMX19_03938 0.22 -0.4 219,538 - MPMX19_03938 0.22 -1.2 219,538 - MPMX19_03938 0.22 +1.2 219,538 - MPMX19_03938 0.22 -1.3 219,538 - MPMX19_03938 0.22 +1.6 219,538 - MPMX19_03938 0.22 +0.9 219,538 - MPMX19_03938 0.22 +2.2 219,538 - MPMX19_03938 0.22 +2.2 219,538 - MPMX19_03938 0.22 +0.3 219,540 + MPMX19_03938 0.22 -2.0 219,540 + MPMX19_03938 0.22 -0.4 219,609 + MPMX19_03938 0.26 -0.4 219,609 + MPMX19_03938 0.26 -2.5 219,609 + MPMX19_03938 0.26 -0.8 219,609 + MPMX19_03938 0.26 -0.2 219,609 + MPMX19_03938 0.26 +0.3 219,609 + MPMX19_03938 0.26 -1.4 219,609 + MPMX19_03938 0.26 +3.5 219,609 + MPMX19_03938 0.26 +0.6 219,609 + MPMX19_03938 0.26 -1.1 219,609 + MPMX19_03938 0.26 +0.2 219,609 + MPMX19_03938 0.26 +0.2 219,609 + MPMX19_03938 0.26 -0.7 219,610 - MPMX19_03938 0.26 +1.0 219,610 - MPMX19_03938 0.26 +0.6 219,610 - MPMX19_03938 0.26 +1.2 219,610 - MPMX19_03938 0.26 +0.0 219,610 - MPMX19_03938 0.26 -1.1 219,610 - MPMX19_03938 0.26 +0.6 219,610 - MPMX19_03938 0.26 -0.6 219,610 - MPMX19_03938 0.26 -0.9 219,610 - MPMX19_03938 0.26 -0.5 219,610 - MPMX19_03938 0.26 -0.8 219,610 - MPMX19_03938 0.26 -1.3 219,610 - MPMX19_03938 0.26 -0.8 219,610 - MPMX19_03938 0.26 -1.2 219,610 - MPMX19_03938 0.26 -0.6 219,610 - MPMX19_03938 0.26 +1.2 219,610 - MPMX19_03938 0.26 -0.8 219,690 + MPMX19_03938 0.31 -0.7 219,690 + MPMX19_03938 0.31 -0.6 219,690 + MPMX19_03938 0.31 -0.2 219,690 + MPMX19_03938 0.31 -1.6 219,690 + MPMX19_03938 0.31 -0.3 219,691 - MPMX19_03938 0.31 -1.1 219,691 - MPMX19_03938 0.31 +0.6 219,691 - MPMX19_03938 0.31 -0.8 219,691 - MPMX19_03938 0.31 -0.0 219,768 + MPMX19_03938 0.36 -2.7 219,768 + MPMX19_03938 0.36 +0.2 219,768 + MPMX19_03938 0.36 -0.5 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 +0.4 219,768 + MPMX19_03938 0.36 -0.0 219,768 + MPMX19_03938 0.36 -2.5 219,768 + MPMX19_03938 0.36 -1.1 219,768 + MPMX19_03938 0.36 -1.4 219,768 + MPMX19_03938 0.36 -1.9 219,768 + MPMX19_03938 0.36 +0.7 219,768 + MPMX19_03938 0.36 -1.3 219,768 + MPMX19_03938 0.36 -1.6 219,769 - MPMX19_03938 0.36 -0.8 219,769 - MPMX19_03938 0.36 +0.4 219,769 - MPMX19_03938 0.36 -2.6 219,769 - MPMX19_03938 0.36 -0.2 219,769 - MPMX19_03938 0.36 -1.8 219,769 - MPMX19_03938 0.36 -1.6 219,931 - MPMX19_03938 0.46 -0.2 219,931 - MPMX19_03938 0.46 +0.0 219,931 - MPMX19_03938 0.46 -0.5 220,056 + MPMX19_03938 0.54 -1.0 220,056 + MPMX19_03938 0.54 -1.6 220,056 + MPMX19_03938 0.54 +0.7 220,056 + MPMX19_03938 0.54 -0.7 220,056 + MPMX19_03938 0.54 +0.2 220,056 + MPMX19_03938 0.54 -1.3 220,056 + MPMX19_03938 0.54 +0.2 220,056 + MPMX19_03938 0.54 -0.5 220,057 - MPMX19_03938 0.54 +0.2 220,057 - MPMX19_03938 0.54 +1.6 220,057 - MPMX19_03938 0.54 +0.6 220,057 - MPMX19_03938 0.54 +0.4 220,057 - MPMX19_03938 0.54 -1.3 220,057 - MPMX19_03938 0.54 -0.6 220,057 - MPMX19_03938 0.54 -1.4 220,057 - MPMX19_03938 0.54 -0.8 220,156 - MPMX19_03938 0.60 -1.5 220,341 + MPMX19_03938 0.72 -0.6 220,341 + MPMX19_03938 0.72 +0.0 220,341 + MPMX19_03938 0.72 -1.6 220,341 + MPMX19_03938 0.72 -0.8 220,342 - MPMX19_03938 0.72 +1.2 220,342 - MPMX19_03938 0.72 -1.3 220,342 - MPMX19_03938 0.72 +0.3 220,342 - MPMX19_03938 0.72 -1.4 220,437 + MPMX19_03938 0.78 -0.9 220,438 - MPMX19_03938 0.78 -0.4 220,452 + MPMX19_03938 0.79 -1.9 220,452 + MPMX19_03938 0.79 -0.3 220,452 + MPMX19_03938 0.79 -0.2 220,452 + MPMX19_03938 0.79 +0.3 220,452 + MPMX19_03938 0.79 -0.0 220,452 + MPMX19_03938 0.79 +0.2 220,452 + MPMX19_03938 0.79 -2.0 220,452 + MPMX19_03938 0.79 -1.2 220,453 - MPMX19_03938 0.79 -1.0 220,453 - MPMX19_03938 0.79 -0.6 220,453 - MPMX19_03938 0.79 -1.2 220,453 - MPMX19_03938 0.79 -0.4 220,474 - MPMX19_03938 0.80 -0.6 220,474 - MPMX19_03938 0.80 +0.9 220,474 - MPMX19_03938 0.80 -0.2 220,474 - MPMX19_03938 0.80 +0.3 220,662 + -0.6 220,662 + -1.2 220,662 + -1.2 220,662 + -0.7 220,662 + +1.7 220,662 + -1.1 220,662 + -1.2 220,662 + -2.5 220,662 + +0.4 220,662 + +0.5 220,663 - -1.6 220,663 - -0.2 220,663 - -0.5 220,663 - +0.2 220,663 - +1.2 220,665 + -0.0 220,665 + -0.2 220,665 + -0.5 220,665 + -1.5 220,665 + -0.5 220,665 + -0.7 220,665 + +0.4 220,665 + +0.6 220,666 - -0.6 220,666 - -0.5 220,666 - +0.2 221,249 + MPMX19_03939 0.56 +0.0 221,249 + MPMX19_03939 0.56 +0.7 221,250 - MPMX19_03939 0.56 -0.0 221,250 - MPMX19_03939 0.56 +1.7 221,250 - MPMX19_03939 0.56 +1.4 221,250 - MPMX19_03939 0.56 +0.3 221,250 - MPMX19_03939 0.56 -0.3 221,250 - MPMX19_03939 0.56 +1.7 221,289 - MPMX19_03939 0.61 +0.6 221,773 + -0.5 221,773 + -0.4 221,773 + -1.3 221,773 + -1.3 221,773 + +0.5 221,773 + -1.2 221,773 + -0.6 221,773 + -1.7 221,773 + -1.8 221,773 + +0.7 221,774 - -0.2 221,774 - +0.2 221,774 - -1.0 221,774 - +0.4 221,774 - -0.8 221,774 - -0.6 221,774 - -0.8 221,774 - -0.4 221,774 - -0.4
Or see this region's nucleotide sequence