Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03935 and MPMX19_03936 are separated by 43 nucleotides MPMX19_03936 and MPMX19_03937 are separated by 160 nucleotides
MPMX19_03935: MPMX19_03935 - Acyl-CoA dehydrogenase, short-chain specific, at 215,455 to 216,627
_03935
MPMX19_03936: MPMX19_03936 - Acetyl-CoA acetyltransferase, at 216,671 to 217,852
_03936
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.674 kb on + strand, within MPMX19_03935 at 215.674 kb on + strand, within MPMX19_03935 at 215.675 kb on - strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.807 kb on - strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.836 kb on - strand, within MPMX19_03935 at 215.836 kb on - strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.921 kb on - strand, within MPMX19_03935 at 215.921 kb on - strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.200 kb on - strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.553 kb on + strand at 216.553 kb on + strand at 216.554 kb on - strand at 216.554 kb on - strand at 216.554 kb on - strand at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.867 kb on + strand at 217.867 kb on + strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.924 kb on - strand at 217.959 kb on + strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.988 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 215,674 + MPMX19_03935 0.19 +0.8 215,674 + MPMX19_03935 0.19 -1.0 215,675 - MPMX19_03935 0.19 -1.5 215,737 + MPMX19_03935 0.24 -0.6 215,737 + MPMX19_03935 0.24 +0.7 215,737 + MPMX19_03935 0.24 +0.6 215,738 - MPMX19_03935 0.24 +0.6 215,738 - MPMX19_03935 0.24 -0.4 215,738 - MPMX19_03935 0.24 -0.5 215,807 - MPMX19_03935 0.30 -1.1 215,835 + MPMX19_03935 0.32 -0.3 215,835 + MPMX19_03935 0.32 +1.2 215,835 + MPMX19_03935 0.32 +0.2 215,835 + MPMX19_03935 0.32 -2.1 215,835 + MPMX19_03935 0.32 -0.3 215,836 - MPMX19_03935 0.32 -0.5 215,836 - MPMX19_03935 0.32 +1.2 215,920 + MPMX19_03935 0.40 -0.6 215,920 + MPMX19_03935 0.40 +1.2 215,920 + MPMX19_03935 0.40 +0.6 215,920 + MPMX19_03935 0.40 -0.5 215,920 + MPMX19_03935 0.40 +0.4 215,921 - MPMX19_03935 0.40 -1.0 215,921 - MPMX19_03935 0.40 +0.2 215,983 + MPMX19_03935 0.45 -1.0 215,983 + MPMX19_03935 0.45 +0.2 215,983 + MPMX19_03935 0.45 -0.4 215,984 - MPMX19_03935 0.45 +0.3 215,984 - MPMX19_03935 0.45 +0.6 215,984 - MPMX19_03935 0.45 -0.8 215,984 - MPMX19_03935 0.45 +0.4 215,984 - MPMX19_03935 0.45 -0.2 215,984 - MPMX19_03935 0.45 +1.0 215,984 - MPMX19_03935 0.45 -0.2 215,984 - MPMX19_03935 0.45 +1.3 216,199 + MPMX19_03935 0.63 +0.8 216,199 + MPMX19_03935 0.63 +0.6 216,199 + MPMX19_03935 0.63 +0.1 216,200 - MPMX19_03935 0.64 +1.6 216,268 + MPMX19_03935 0.69 -0.5 216,268 + MPMX19_03935 0.69 +0.4 216,268 + MPMX19_03935 0.69 +1.0 216,268 + MPMX19_03935 0.69 -0.6 216,268 + MPMX19_03935 0.69 -1.9 216,268 + MPMX19_03935 0.69 +0.2 216,269 - MPMX19_03935 0.69 +0.6 216,269 - MPMX19_03935 0.69 -1.6 216,269 - MPMX19_03935 0.69 -0.2 216,343 + MPMX19_03935 0.76 -0.3 216,343 + MPMX19_03935 0.76 -1.3 216,343 + MPMX19_03935 0.76 +0.6 216,343 + MPMX19_03935 0.76 +2.2 216,343 + MPMX19_03935 0.76 -0.9 216,343 + MPMX19_03935 0.76 +0.1 216,343 + MPMX19_03935 0.76 -0.7 216,343 + MPMX19_03935 0.76 -0.3 216,343 + MPMX19_03935 0.76 +0.9 216,343 + MPMX19_03935 0.76 -1.0 216,343 + MPMX19_03935 0.76 -1.2 216,343 + MPMX19_03935 0.76 -1.3 216,343 + MPMX19_03935 0.76 +0.6 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -0.7 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -1.1 216,343 + MPMX19_03935 0.76 -0.4 216,343 + MPMX19_03935 0.76 -0.4 216,343 + MPMX19_03935 0.76 -0.5 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -1.0 216,343 + MPMX19_03935 0.76 +0.2 216,343 + MPMX19_03935 0.76 -1.3 216,343 + MPMX19_03935 0.76 +0.3 216,343 + MPMX19_03935 0.76 -0.9 216,343 + MPMX19_03935 0.76 -1.5 216,343 + MPMX19_03935 0.76 -0.7 216,344 - MPMX19_03935 0.76 +0.6 216,344 - MPMX19_03935 0.76 +0.3 216,344 - MPMX19_03935 0.76 -0.4 216,344 - MPMX19_03935 0.76 +0.3 216,344 - MPMX19_03935 0.76 +0.8 216,344 - MPMX19_03935 0.76 -1.0 216,344 - MPMX19_03935 0.76 -1.3 216,344 - MPMX19_03935 0.76 -0.8 216,344 - MPMX19_03935 0.76 -0.8 216,344 - MPMX19_03935 0.76 +0.6 216,344 - MPMX19_03935 0.76 -0.8 216,344 - MPMX19_03935 0.76 -0.8 216,344 - MPMX19_03935 0.76 -0.2 216,344 - MPMX19_03935 0.76 -0.5 216,344 - MPMX19_03935 0.76 -0.6 216,344 - MPMX19_03935 0.76 +0.5 216,344 - MPMX19_03935 0.76 -0.5 216,370 + MPMX19_03935 0.78 -2.6 216,370 + MPMX19_03935 0.78 +0.1 216,370 + MPMX19_03935 0.78 -1.2 216,370 + MPMX19_03935 0.78 -1.0 216,370 + MPMX19_03935 0.78 -0.7 216,370 + MPMX19_03935 0.78 -2.0 216,370 + MPMX19_03935 0.78 -0.2 216,370 + MPMX19_03935 0.78 -1.3 216,370 + MPMX19_03935 0.78 +0.8 216,370 + MPMX19_03935 0.78 -0.2 216,371 - MPMX19_03935 0.78 -0.8 216,371 - MPMX19_03935 0.78 +0.2 216,371 - MPMX19_03935 0.78 -0.4 216,371 - MPMX19_03935 0.78 -1.0 216,371 - MPMX19_03935 0.78 -3.0 216,371 - MPMX19_03935 0.78 +0.2 216,371 - MPMX19_03935 0.78 +0.2 216,371 - MPMX19_03935 0.78 +1.4 216,371 - MPMX19_03935 0.78 +0.3 216,371 - MPMX19_03935 0.78 +0.4 216,371 - MPMX19_03935 0.78 +1.8 216,371 - MPMX19_03935 0.78 +1.6 216,376 + MPMX19_03935 0.79 -0.1 216,376 + MPMX19_03935 0.79 -0.2 216,376 + MPMX19_03935 0.79 -1.3 216,376 + MPMX19_03935 0.79 +1.2 216,376 + MPMX19_03935 0.79 -0.8 216,376 + MPMX19_03935 0.79 +0.2 216,376 + MPMX19_03935 0.79 -0.5 216,376 + MPMX19_03935 0.79 -1.2 216,377 - MPMX19_03935 0.79 +0.9 216,377 - MPMX19_03935 0.79 -1.0 216,377 - MPMX19_03935 0.79 +0.6 216,377 - MPMX19_03935 0.79 +1.2 216,377 - MPMX19_03935 0.79 -0.7 216,377 - MPMX19_03935 0.79 +1.6 216,377 - MPMX19_03935 0.79 -1.4 216,377 - MPMX19_03935 0.79 -0.4 216,553 + -1.3 216,553 + -1.3 216,554 - +0.5 216,554 - -0.6 216,554 - +0.5 217,040 + MPMX19_03936 0.31 -1.8 217,040 + MPMX19_03936 0.31 -0.3 217,040 + MPMX19_03936 0.31 -0.7 217,041 - MPMX19_03936 0.31 -0.2 217,041 - MPMX19_03936 0.31 +0.9 217,041 - MPMX19_03936 0.31 -1.4 217,127 + MPMX19_03936 0.39 +1.2 217,127 + MPMX19_03936 0.39 -0.2 217,127 + MPMX19_03936 0.39 +0.1 217,127 + MPMX19_03936 0.39 -0.6 217,127 + MPMX19_03936 0.39 -0.7 217,127 + MPMX19_03936 0.39 +0.8 217,127 + MPMX19_03936 0.39 -0.0 217,128 - MPMX19_03936 0.39 +0.4 217,128 - MPMX19_03936 0.39 -0.4 217,128 - MPMX19_03936 0.39 +1.2 217,128 - MPMX19_03936 0.39 -0.6 217,178 + MPMX19_03936 0.43 -0.1 217,178 + MPMX19_03936 0.43 -2.6 217,179 - MPMX19_03936 0.43 +0.5 217,179 - MPMX19_03936 0.43 +0.6 217,179 - MPMX19_03936 0.43 -0.5 217,775 + -1.6 217,775 + -1.6 217,775 + -0.3 217,775 + +0.5 217,776 - +0.1 217,776 - -0.2 217,776 - -1.5 217,850 + -1.2 217,850 + -0.4 217,850 + +0.1 217,850 + -0.9 217,850 + -0.2 217,850 + +1.2 217,850 + -2.4 217,850 + -0.3 217,851 - +0.1 217,851 - +0.0 217,851 - -0.7 217,851 - -0.4 217,851 - -1.3 217,851 - -1.5 217,851 - -1.3 217,851 - +0.2 217,867 + -0.2 217,867 + -0.0 217,868 - +2.2 217,868 - +0.4 217,868 - -1.4 217,868 - +3.2 217,868 - -0.8 217,868 - -1.3 217,868 - -0.4 217,924 - +0.1 217,959 + -0.6 217,960 - -1.0 217,960 - -1.0 217,960 - +0.9 217,960 - -0.4 217,960 - -0.8 217,960 - -0.1 217,988 + -1.4 217,990 + -1.4 217,990 + -0.4 217,990 + +0.1 217,990 + -0.6 217,990 + +0.1 217,990 + +1.0 217,990 + -0.6 217,990 + +1.2 217,990 + -0.8 217,990 + -0.2 217,990 + -1.4 218,211 + MPMX19_03937 0.17 -0.2 218,211 + MPMX19_03937 0.17 +1.2 218,211 + MPMX19_03937 0.17 -0.3 218,211 + MPMX19_03937 0.17 -1.1 218,212 - MPMX19_03937 0.18 -0.4 218,212 - MPMX19_03937 0.18 +1.0 218,583 + MPMX19_03937 0.50 +0.1 218,701 - MPMX19_03937 0.61 +0.8 218,701 - MPMX19_03937 0.61 +1.8 218,797 - MPMX19_03937 0.69 +1.0 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 +0.1
Or see this region's nucleotide sequence