Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03928 and MPMX19_03929 are separated by 28 nucleotides MPMX19_03929 and MPMX19_03930 are separated by 97 nucleotides
MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693
_03928
MPMX19_03929: MPMX19_03929 - hypothetical protein, at 208,722 to 209,450
_03929
MPMX19_03930: MPMX19_03930 - Inner membrane protein YdcO, at 209,548 to 210,771
_03930
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 207.861 kb on - strand, within MPMX19_03928 at 207.861 kb on - strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.985 kb on + strand, within MPMX19_03928 at 207.986 kb on - strand, within MPMX19_03928 at 208.385 kb on + strand, within MPMX19_03928 at 208.386 kb on - strand, within MPMX19_03928 at 208.386 kb on - strand, within MPMX19_03928 at 208.529 kb on + strand at 208.530 kb on - strand at 208.691 kb on + strand at 208.691 kb on + strand at 208.691 kb on + strand at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.865 kb on - strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 209.379 kb on + strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.662 kb on + strand at 209.663 kb on - strand at 209.663 kb on - strand at 209.727 kb on + strand, within MPMX19_03930 at 209.727 kb on + strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 207,861 - MPMX19_03928 0.66 -1.3 207,861 - MPMX19_03928 0.66 -1.3 207,983 + MPMX19_03928 0.71 -1.0 207,983 + MPMX19_03928 0.71 -0.3 207,983 + MPMX19_03928 0.71 -0.6 207,983 + MPMX19_03928 0.71 +0.3 207,983 + MPMX19_03928 0.71 +0.1 207,983 + MPMX19_03928 0.71 -0.7 207,984 - MPMX19_03928 0.71 -0.6 207,984 - MPMX19_03928 0.71 +0.0 207,984 - MPMX19_03928 0.71 +0.6 207,984 - MPMX19_03928 0.71 -1.5 207,985 + MPMX19_03928 0.71 -0.1 207,986 - MPMX19_03928 0.71 -0.5 208,385 + MPMX19_03928 0.87 -1.9 208,386 - MPMX19_03928 0.87 -1.1 208,386 - MPMX19_03928 0.87 +0.2 208,529 + -1.5 208,530 - +0.8 208,691 + -0.2 208,691 + -1.4 208,691 + -1.3 208,864 + MPMX19_03929 0.19 -0.8 208,864 + MPMX19_03929 0.19 +2.2 208,864 + MPMX19_03929 0.19 +0.6 208,865 - MPMX19_03929 0.20 -1.1 208,894 + MPMX19_03929 0.24 +0.2 208,894 + MPMX19_03929 0.24 -2.0 208,894 + MPMX19_03929 0.24 -0.6 208,895 - MPMX19_03929 0.24 +0.2 208,895 - MPMX19_03929 0.24 +0.6 208,895 - MPMX19_03929 0.24 -0.1 208,895 - MPMX19_03929 0.24 +0.0 208,960 + MPMX19_03929 0.33 +0.6 208,960 + MPMX19_03929 0.33 -1.2 208,960 + MPMX19_03929 0.33 -0.1 208,961 - MPMX19_03929 0.33 +1.1 208,961 - MPMX19_03929 0.33 +0.6 208,961 - MPMX19_03929 0.33 -2.1 208,961 - MPMX19_03929 0.33 +0.2 209,379 + +1.5 209,380 - +0.1 209,380 - -0.7 209,662 + -0.6 209,663 - +0.7 209,663 - +0.3 209,727 + MPMX19_03930 0.15 -1.7 209,727 + MPMX19_03930 0.15 -1.0 209,728 - MPMX19_03930 0.15 +0.0 209,728 - MPMX19_03930 0.15 -0.5 209,728 - MPMX19_03930 0.15 -0.8 209,728 - MPMX19_03930 0.15 -1.9 209,728 - MPMX19_03930 0.15 -0.7 210,103 + MPMX19_03930 0.45 -1.1 210,103 + MPMX19_03930 0.45 -0.2 210,103 + MPMX19_03930 0.45 +1.0 210,103 + MPMX19_03930 0.45 +0.1 210,103 + MPMX19_03930 0.45 -0.8 210,104 - MPMX19_03930 0.45 +0.7 210,104 - MPMX19_03930 0.45 -0.8 210,104 - MPMX19_03930 0.45 -0.1 210,104 - MPMX19_03930 0.45 -0.3
Or see this region's nucleotide sequence