Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03928

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03927 and MPMX19_03928 are separated by 121 nucleotidesMPMX19_03928 and MPMX19_03929 are separated by 28 nucleotidesMPMX19_03929 and MPMX19_03930 are separated by 97 nucleotides MPMX19_03927: MPMX19_03927 - HTH-type transcriptional activator CmpR, at 205,225 to 206,112 _03927 MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693 _03928 MPMX19_03929: MPMX19_03929 - hypothetical protein, at 208,722 to 209,450 _03929 MPMX19_03930: MPMX19_03930 - Inner membrane protein YdcO, at 209,548 to 210,771 _03930 Position (kb) 206 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.544 kb on - strand, within MPMX19_03927at 205.813 kb on + strand, within MPMX19_03927at 205.814 kb on - strand, within MPMX19_03927at 205.814 kb on - strand, within MPMX19_03927at 206.064 kb on + strandat 206.065 kb on - strandat 206.065 kb on - strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.106 kb on - strandat 206.106 kb on - strandat 206.106 kb on - strandat 206.123 kb on + strandat 206.171 kb on + strandat 206.172 kb on - strandat 206.176 kb on + strandat 206.233 kb on + strandat 206.233 kb on + strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.307 kb on + strandat 206.928 kb on - strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 207.056 kb on - strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.266 kb on + strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.267 kb on - strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.296 kb on + strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.297 kb on - strand, within MPMX19_03928at 207.358 kb on + strand, within MPMX19_03928at 207.358 kb on + strand, within MPMX19_03928at 207.359 kb on - strand, within MPMX19_03928at 207.388 kb on + strand, within MPMX19_03928at 207.389 kb on - strand, within MPMX19_03928at 207.389 kb on - strand, within MPMX19_03928at 207.389 kb on - strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.491 kb on + strand, within MPMX19_03928at 207.492 kb on - strand, within MPMX19_03928at 207.492 kb on - strand, within MPMX19_03928at 207.492 kb on - strand, within MPMX19_03928at 207.519 kb on - strand, within MPMX19_03928at 207.519 kb on - strand, within MPMX19_03928at 207.519 kb on - strand, within MPMX19_03928at 207.519 kb on - strand, within MPMX19_03928at 207.861 kb on - strand, within MPMX19_03928at 207.861 kb on - strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.983 kb on + strand, within MPMX19_03928at 207.984 kb on - strand, within MPMX19_03928at 207.984 kb on - strand, within MPMX19_03928at 207.984 kb on - strand, within MPMX19_03928at 207.984 kb on - strand, within MPMX19_03928at 207.985 kb on + strand, within MPMX19_03928at 207.986 kb on - strand, within MPMX19_03928at 208.385 kb on + strand, within MPMX19_03928at 208.386 kb on - strand, within MPMX19_03928at 208.386 kb on - strand, within MPMX19_03928at 208.529 kb on + strandat 208.530 kb on - strandat 208.691 kb on + strandat 208.691 kb on + strandat 208.691 kb on + strandat 208.864 kb on + strand, within MPMX19_03929at 208.864 kb on + strand, within MPMX19_03929at 208.864 kb on + strand, within MPMX19_03929at 208.865 kb on - strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 209.379 kb on + strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.662 kb on + strandat 209.663 kb on - strandat 209.663 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
205,539 + MPMX19_03927 0.35 -0.0
205,539 + MPMX19_03927 0.35 +0.4
205,539 + MPMX19_03927 0.35 -1.5
205,539 + MPMX19_03927 0.35 -0.5
205,539 + MPMX19_03927 0.35 -0.4
205,539 + MPMX19_03927 0.35 +0.1
205,539 + MPMX19_03927 0.35 -1.0
205,539 + MPMX19_03927 0.35 +0.8
205,539 + MPMX19_03927 0.35 +0.0
205,539 + MPMX19_03927 0.35 -0.3
205,539 + MPMX19_03927 0.35 +2.2
205,539 + MPMX19_03927 0.35 -0.3
205,539 + MPMX19_03927 0.35 -0.1
205,540 - MPMX19_03927 0.35 -0.6
205,540 - MPMX19_03927 0.35 +0.9
205,540 - MPMX19_03927 0.35 -0.9
205,540 - MPMX19_03927 0.35 +0.2
205,540 - MPMX19_03927 0.35 -1.6
205,540 - MPMX19_03927 0.35 -1.5
205,540 - MPMX19_03927 0.35 +0.3
205,540 - MPMX19_03927 0.35 +1.0
205,540 - MPMX19_03927 0.35 +0.0
205,540 - MPMX19_03927 0.35 -1.8
205,540 - MPMX19_03927 0.35 -0.3
205,543 + MPMX19_03927 0.36 +0.2
205,543 + MPMX19_03927 0.36 -0.3
205,543 + MPMX19_03927 0.36 -0.9
205,543 + MPMX19_03927 0.36 -0.6
205,544 - MPMX19_03927 0.36 -1.0
205,813 + MPMX19_03927 0.66 +0.2
205,814 - MPMX19_03927 0.66 -0.1
205,814 - MPMX19_03927 0.66 -0.4
206,064 + +0.2
206,065 - -0.2
206,065 - +0.6
206,105 + +0.4
206,105 + +0.4
206,105 + -1.8
206,105 + -0.1
206,106 - +0.4
206,106 - -1.1
206,106 - -1.3
206,123 + +0.8
206,171 + -0.1
206,172 - -2.0
206,176 + -1.0
206,233 + -0.7
206,233 + -0.1
206,234 - -0.1
206,234 - -0.1
206,234 - -0.7
206,234 - -0.7
206,307 + -0.3
206,928 - MPMX19_03928 0.28 +0.2
206,939 + MPMX19_03928 0.29 -1.3
206,939 + MPMX19_03928 0.29 +1.2
206,939 + MPMX19_03928 0.29 -0.8
206,939 + MPMX19_03928 0.29 -1.1
206,939 + MPMX19_03928 0.29 -0.2
206,939 + MPMX19_03928 0.29 -2.5
206,939 + MPMX19_03928 0.29 -2.1
206,939 + MPMX19_03928 0.29 -1.6
206,940 - MPMX19_03928 0.29 -0.1
206,940 - MPMX19_03928 0.29 +0.4
206,940 - MPMX19_03928 0.29 -0.0
206,940 - MPMX19_03928 0.29 +0.5
206,940 - MPMX19_03928 0.29 -2.1
206,940 - MPMX19_03928 0.29 -0.1
206,940 - MPMX19_03928 0.29 +0.6
207,056 - MPMX19_03928 0.33 -1.0
207,266 + MPMX19_03928 0.42 -0.7
207,266 + MPMX19_03928 0.42 +0.2
207,266 + MPMX19_03928 0.42 -1.0
207,266 + MPMX19_03928 0.42 +1.6
207,266 + MPMX19_03928 0.42 -1.0
207,266 + MPMX19_03928 0.42 -1.3
207,266 + MPMX19_03928 0.42 -0.7
207,266 + MPMX19_03928 0.42 +0.4
207,266 + MPMX19_03928 0.42 -1.1
207,267 - MPMX19_03928 0.42 +0.9
207,267 - MPMX19_03928 0.42 -2.1
207,267 - MPMX19_03928 0.42 -0.4
207,267 - MPMX19_03928 0.42 +0.4
207,267 - MPMX19_03928 0.42 +0.3
207,267 - MPMX19_03928 0.42 +0.0
207,267 - MPMX19_03928 0.42 +0.1
207,267 - MPMX19_03928 0.42 -0.6
207,267 - MPMX19_03928 0.42 +0.2
207,267 - MPMX19_03928 0.42 -1.6
207,267 - MPMX19_03928 0.42 +0.2
207,267 - MPMX19_03928 0.42 -0.6
207,267 - MPMX19_03928 0.42 +1.4
207,296 + MPMX19_03928 0.43 -0.9
207,296 + MPMX19_03928 0.43 -0.8
207,296 + MPMX19_03928 0.43 -1.1
207,296 + MPMX19_03928 0.43 -2.0
207,296 + MPMX19_03928 0.43 -0.5
207,296 + MPMX19_03928 0.43 -1.5
207,296 + MPMX19_03928 0.43 -2.0
207,296 + MPMX19_03928 0.43 +1.4
207,296 + MPMX19_03928 0.43 -0.4
207,296 + MPMX19_03928 0.43 -1.0
207,297 - MPMX19_03928 0.43 -1.8
207,297 - MPMX19_03928 0.43 +1.4
207,297 - MPMX19_03928 0.43 -0.3
207,297 - MPMX19_03928 0.43 -1.5
207,297 - MPMX19_03928 0.43 +0.4
207,297 - MPMX19_03928 0.43 +0.4
207,297 - MPMX19_03928 0.43 +0.3
207,297 - MPMX19_03928 0.43 -1.1
207,297 - MPMX19_03928 0.43 -0.6
207,358 + MPMX19_03928 0.46 -0.0
207,358 + MPMX19_03928 0.46 -1.5
207,359 - MPMX19_03928 0.46 -0.8
207,388 + MPMX19_03928 0.47 -0.2
207,389 - MPMX19_03928 0.47 -2.0
207,389 - MPMX19_03928 0.47 -0.4
207,389 - MPMX19_03928 0.47 -0.6
207,491 + MPMX19_03928 0.51 -1.8
207,491 + MPMX19_03928 0.51 +0.6
207,491 + MPMX19_03928 0.51 -0.2
207,491 + MPMX19_03928 0.51 -1.7
207,491 + MPMX19_03928 0.51 +0.4
207,491 + MPMX19_03928 0.51 -1.3
207,491 + MPMX19_03928 0.51 -1.3
207,492 - MPMX19_03928 0.51 +0.2
207,492 - MPMX19_03928 0.51 +0.6
207,492 - MPMX19_03928 0.51 -1.7
207,519 - MPMX19_03928 0.52 +1.9
207,519 - MPMX19_03928 0.52 -0.8
207,519 - MPMX19_03928 0.52 -0.7
207,519 - MPMX19_03928 0.52 -0.6
207,861 - MPMX19_03928 0.66 -1.3
207,861 - MPMX19_03928 0.66 -1.3
207,983 + MPMX19_03928 0.71 -1.0
207,983 + MPMX19_03928 0.71 -0.3
207,983 + MPMX19_03928 0.71 -0.6
207,983 + MPMX19_03928 0.71 +0.3
207,983 + MPMX19_03928 0.71 +0.1
207,983 + MPMX19_03928 0.71 -0.7
207,984 - MPMX19_03928 0.71 -0.6
207,984 - MPMX19_03928 0.71 +0.0
207,984 - MPMX19_03928 0.71 +0.6
207,984 - MPMX19_03928 0.71 -1.5
207,985 + MPMX19_03928 0.71 -0.1
207,986 - MPMX19_03928 0.71 -0.5
208,385 + MPMX19_03928 0.87 -1.9
208,386 - MPMX19_03928 0.87 -1.1
208,386 - MPMX19_03928 0.87 +0.2
208,529 + -1.5
208,530 - +0.8
208,691 + -0.2
208,691 + -1.4
208,691 + -1.3
208,864 + MPMX19_03929 0.19 -0.8
208,864 + MPMX19_03929 0.19 +2.2
208,864 + MPMX19_03929 0.19 +0.6
208,865 - MPMX19_03929 0.20 -1.1
208,894 + MPMX19_03929 0.24 +0.2
208,894 + MPMX19_03929 0.24 -2.0
208,894 + MPMX19_03929 0.24 -0.6
208,895 - MPMX19_03929 0.24 +0.2
208,895 - MPMX19_03929 0.24 +0.6
208,895 - MPMX19_03929 0.24 -0.1
208,895 - MPMX19_03929 0.24 +0.0
208,960 + MPMX19_03929 0.33 +0.6
208,960 + MPMX19_03929 0.33 -1.2
208,960 + MPMX19_03929 0.33 -0.1
208,961 - MPMX19_03929 0.33 +1.1
208,961 - MPMX19_03929 0.33 +0.6
208,961 - MPMX19_03929 0.33 -2.1
208,961 - MPMX19_03929 0.33 +0.2
209,379 + +1.5
209,380 - +0.1
209,380 - -0.7
209,662 + -0.6
209,663 - +0.7
209,663 - +0.3

Or see this region's nucleotide sequence