Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03914

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03913 and MPMX19_03914 are separated by 39 nucleotidesMPMX19_03914 and MPMX19_03915 are separated by 69 nucleotides MPMX19_03913: MPMX19_03913 - hypothetical protein, at 191,253 to 192,770 _03913 MPMX19_03914: MPMX19_03914 - hypothetical protein, at 192,810 to 193,316 _03914 MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351 _03915 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 191.896 kb on + strand, within MPMX19_03913at 191.896 kb on + strand, within MPMX19_03913at 191.896 kb on + strand, within MPMX19_03913at 191.897 kb on - strand, within MPMX19_03913at 191.935 kb on + strand, within MPMX19_03913at 191.935 kb on + strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.944 kb on + strand, within MPMX19_03913at 191.944 kb on + strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.178 kb on + strand, within MPMX19_03913at 192.178 kb on + strand, within MPMX19_03913at 192.550 kb on + strand, within MPMX19_03913at 192.550 kb on + strand, within MPMX19_03913at 192.550 kb on + strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.474 kb on + strandat 193.474 kb on + strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 194.083 kb on + strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.194 kb on + strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.233 kb on + strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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191,896 + MPMX19_03913 0.42 -0.6
191,896 + MPMX19_03913 0.42 -0.8
191,896 + MPMX19_03913 0.42 +0.6
191,897 - MPMX19_03913 0.42 -2.7
191,935 + MPMX19_03913 0.45 -0.9
191,935 + MPMX19_03913 0.45 -1.3
191,936 - MPMX19_03913 0.45 -0.5
191,936 - MPMX19_03913 0.45 +0.1
191,936 - MPMX19_03913 0.45 -0.1
191,944 + MPMX19_03913 0.46 -1.6
191,944 + MPMX19_03913 0.46 -1.6
191,945 - MPMX19_03913 0.46 -1.0
191,945 - MPMX19_03913 0.46 +0.2
191,945 - MPMX19_03913 0.46 -0.2
192,034 + MPMX19_03913 0.51 +2.2
192,034 + MPMX19_03913 0.51 -1.5
192,034 + MPMX19_03913 0.51 -0.2
192,034 + MPMX19_03913 0.51 -0.3
192,034 + MPMX19_03913 0.51 -0.5
192,034 + MPMX19_03913 0.51 +1.3
192,034 + MPMX19_03913 0.51 -1.3
192,034 + MPMX19_03913 0.51 -0.7
192,034 + MPMX19_03913 0.51 +1.0
192,035 - MPMX19_03913 0.52 -0.0
192,035 - MPMX19_03913 0.52 +0.2
192,035 - MPMX19_03913 0.52 +0.5
192,035 - MPMX19_03913 0.52 +0.8
192,035 - MPMX19_03913 0.52 -1.6
192,035 - MPMX19_03913 0.52 +0.2
192,035 - MPMX19_03913 0.52 -0.9
192,035 - MPMX19_03913 0.52 -0.7
192,035 - MPMX19_03913 0.52 -0.1
192,035 - MPMX19_03913 0.52 -0.5
192,035 - MPMX19_03913 0.52 +0.6
192,035 - MPMX19_03913 0.52 +0.2
192,035 - MPMX19_03913 0.52 +0.9
192,178 + MPMX19_03913 0.61 +0.1
192,178 + MPMX19_03913 0.61 +0.0
192,550 + MPMX19_03913 0.85 -1.1
192,550 + MPMX19_03913 0.85 -0.5
192,550 + MPMX19_03913 0.85 +1.0
192,551 - MPMX19_03913 0.86 -1.1
192,551 - MPMX19_03913 0.86 -0.1
192,551 - MPMX19_03913 0.86 -1.7
192,551 - MPMX19_03913 0.86 -0.2
192,551 - MPMX19_03913 0.86 -1.4
192,551 - MPMX19_03913 0.86 -0.2
192,551 - MPMX19_03913 0.86 -0.3
192,551 - MPMX19_03913 0.86 +0.9
192,868 + MPMX19_03914 0.11 -0.6
192,868 + MPMX19_03914 0.11 -1.7
192,868 + MPMX19_03914 0.11 -1.0
192,868 + MPMX19_03914 0.11 +0.0
192,868 + MPMX19_03914 0.11 -0.3
192,868 + MPMX19_03914 0.11 -1.5
192,869 - MPMX19_03914 0.12 -0.6
192,869 - MPMX19_03914 0.12 +0.7
192,869 - MPMX19_03914 0.12 -0.6
192,869 - MPMX19_03914 0.12 -0.1
192,869 - MPMX19_03914 0.12 -0.7
192,952 + MPMX19_03914 0.28 -0.6
192,952 + MPMX19_03914 0.28 +0.7
192,952 + MPMX19_03914 0.28 +0.4
192,952 + MPMX19_03914 0.28 -0.2
192,952 + MPMX19_03914 0.28 +0.1
192,952 + MPMX19_03914 0.28 +0.4
192,952 + MPMX19_03914 0.28 +0.1
192,952 + MPMX19_03914 0.28 -1.4
192,952 + MPMX19_03914 0.28 -1.2
192,952 + MPMX19_03914 0.28 -0.4
192,952 + MPMX19_03914 0.28 -1.3
192,952 + MPMX19_03914 0.28 +0.3
192,952 + MPMX19_03914 0.28 +0.2
192,952 + MPMX19_03914 0.28 +0.1
192,952 + MPMX19_03914 0.28 -1.4
192,952 + MPMX19_03914 0.28 +0.3
192,952 + MPMX19_03914 0.28 +0.7
192,952 + MPMX19_03914 0.28 -1.4
192,953 - MPMX19_03914 0.28 -1.3
192,953 - MPMX19_03914 0.28 -1.0
192,953 - MPMX19_03914 0.28 +1.8
192,953 - MPMX19_03914 0.28 -0.6
192,953 - MPMX19_03914 0.28 -0.3
192,953 - MPMX19_03914 0.28 -0.5
192,953 - MPMX19_03914 0.28 -0.4
192,953 - MPMX19_03914 0.28 -1.4
192,982 + MPMX19_03914 0.34 -0.7
192,982 + MPMX19_03914 0.34 -1.6
192,982 + MPMX19_03914 0.34 +0.2
192,982 + MPMX19_03914 0.34 +0.4
192,982 + MPMX19_03914 0.34 +0.5
192,982 + MPMX19_03914 0.34 -0.0
192,982 + MPMX19_03914 0.34 -0.2
192,982 + MPMX19_03914 0.34 -0.5
192,982 + MPMX19_03914 0.34 -0.5
192,983 - MPMX19_03914 0.34 -1.0
192,983 - MPMX19_03914 0.34 +0.5
192,983 - MPMX19_03914 0.34 +0.3
192,983 - MPMX19_03914 0.34 -0.9
192,983 - MPMX19_03914 0.34 +0.6
192,983 - MPMX19_03914 0.34 +2.2
192,983 - MPMX19_03914 0.34 +0.3
192,983 - MPMX19_03914 0.34 -0.4
192,983 - MPMX19_03914 0.34 +0.0
192,983 - MPMX19_03914 0.34 +1.2
192,983 - MPMX19_03914 0.34 -1.1
192,983 - MPMX19_03914 0.34 +0.2
192,983 - MPMX19_03914 0.34 +0.2
192,983 - MPMX19_03914 0.34 +0.5
192,983 - MPMX19_03914 0.34 +0.0
192,983 - MPMX19_03914 0.34 -0.6
192,983 - MPMX19_03914 0.34 +0.2
192,983 - MPMX19_03914 0.34 -0.3
192,983 - MPMX19_03914 0.34 -0.6
192,994 + MPMX19_03914 0.36 -0.9
192,994 + MPMX19_03914 0.36 +0.6
192,994 + MPMX19_03914 0.36 -1.0
192,994 + MPMX19_03914 0.36 +0.1
192,994 + MPMX19_03914 0.36 -1.1
192,994 + MPMX19_03914 0.36 -1.3
192,995 - MPMX19_03914 0.36 +1.2
192,995 - MPMX19_03914 0.36 -0.1
192,995 - MPMX19_03914 0.36 -0.8
192,995 - MPMX19_03914 0.36 -0.6
192,995 - MPMX19_03914 0.36 -1.3
193,040 - MPMX19_03914 0.45 -1.0
193,040 - MPMX19_03914 0.45 -0.8
193,040 - MPMX19_03914 0.45 -2.7
193,387 + +0.2
193,387 + +0.8
193,387 + -0.8
193,387 + -0.6
193,387 + -0.6
193,387 + -0.3
193,387 + +0.5
193,388 - +0.2
193,388 - +0.3
193,388 - -0.2
193,388 - +1.0
193,474 + -1.5
193,474 + +0.2
193,475 - -0.9
193,475 - +0.4
193,475 - -0.1
193,475 - -0.8
194,083 + MPMX19_03915 0.72 -1.4
194,084 - MPMX19_03915 0.72 -0.5
194,084 - MPMX19_03915 0.72 +0.6
194,084 - MPMX19_03915 0.72 +0.4
194,194 + MPMX19_03915 0.84 +0.7
194,195 - MPMX19_03915 0.84 -1.1
194,195 - MPMX19_03915 0.84 -1.1
194,233 + MPMX19_03915 0.88 +0.9
194,234 - MPMX19_03915 0.88 -0.3
194,234 - MPMX19_03915 0.88 -0.8
194,234 - MPMX19_03915 0.88 -0.3

Or see this region's nucleotide sequence