Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03908

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03907 and MPMX19_03908 are separated by 119 nucleotidesMPMX19_03908 and MPMX19_03909 are separated by 25 nucleotides MPMX19_03907: MPMX19_03907 - Short-chain-enoyl-CoA hydratase, at 183,745 to 184,521 _03907 MPMX19_03908: MPMX19_03908 - hypothetical protein, at 184,641 to 185,741 _03908 MPMX19_03909: MPMX19_03909 - Vitamin B12 import ATP-binding protein BtuD, at 185,767 to 186,873 _03909 Position (kb) 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 184.009 kb on + strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strandat 184.544 kb on + strandat 184.634 kb on + strandat 184.634 kb on + strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.816 kb on - strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.942 kb on - strand, within MPMX19_03908at 185.088 kb on + strand, within MPMX19_03908at 185.089 kb on - strand, within MPMX19_03908at 185.259 kb on + strand, within MPMX19_03908at 185.260 kb on - strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.575 kb on - strand, within MPMX19_03908at 185.598 kb on + strand, within MPMX19_03908at 185.598 kb on + strand, within MPMX19_03908at 185.598 kb on + strand, within MPMX19_03908at 185.598 kb on + strand, within MPMX19_03908at 185.598 kb on + strand, within MPMX19_03908at 185.599 kb on - strand, within MPMX19_03908at 185.599 kb on - strand, within MPMX19_03908at 185.599 kb on - strand, within MPMX19_03908at 185.833 kb on + strandat 185.834 kb on - strandat 185.834 kb on - strandat 185.834 kb on - strandat 185.834 kb on - strandat 185.834 kb on - strandat 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.046 kb on + strand, within MPMX19_03909at 186.047 kb on - strand, within MPMX19_03909at 186.047 kb on - strand, within MPMX19_03909at 186.047 kb on - strand, within MPMX19_03909at 186.047 kb on - strand, within MPMX19_03909at 186.047 kb on - strand, within MPMX19_03909at 186.245 kb on - strand, within MPMX19_03909at 186.245 kb on - strand, within MPMX19_03909at 186.245 kb on - strand, within MPMX19_03909at 186.316 kb on + strand, within MPMX19_03909at 186.316 kb on + strand, within MPMX19_03909at 186.317 kb on - strand, within MPMX19_03909at 186.317 kb on - strand, within MPMX19_03909at 186.317 kb on - strand, within MPMX19_03909at 186.317 kb on - strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.361 kb on + strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.362 kb on - strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.460 kb on + strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.461 kb on - strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.727 kb on + strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909at 186.728 kb on - strand, within MPMX19_03909

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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183,867 + MPMX19_03907 0.16 -0.6
183,867 + MPMX19_03907 0.16 +0.4
183,867 + MPMX19_03907 0.16 -0.8
183,868 - MPMX19_03907 0.16 -1.5
183,868 - MPMX19_03907 0.16 -1.0
183,868 - MPMX19_03907 0.16 +0.7
183,868 - MPMX19_03907 0.16 -1.4
183,868 - MPMX19_03907 0.16 -1.0
184,009 + MPMX19_03907 0.34 -1.3
184,010 - MPMX19_03907 0.34 -0.8
184,010 - MPMX19_03907 0.34 +0.7
184,010 - MPMX19_03907 0.34 -1.1
184,448 - -1.0
184,448 - +1.2
184,448 - -1.1
184,448 - -0.7
184,544 + -2.9
184,634 + -2.0
184,634 + -0.6
184,635 - -2.1
184,635 - -1.7
184,635 - +0.2
184,635 - -0.9
184,635 - -0.7
184,635 - -0.6
184,635 - -0.2
184,635 - +0.2
184,816 - MPMX19_03908 0.16 -0.4
184,842 + MPMX19_03908 0.18 +1.5
184,842 + MPMX19_03908 0.18 -0.1
184,842 + MPMX19_03908 0.18 -0.3
184,842 + MPMX19_03908 0.18 -0.2
184,843 - MPMX19_03908 0.18 -0.6
184,843 - MPMX19_03908 0.18 -0.6
184,843 - MPMX19_03908 0.18 -2.0
184,843 - MPMX19_03908 0.18 -0.5
184,843 - MPMX19_03908 0.18 +0.1
184,843 - MPMX19_03908 0.18 +1.4
184,941 + MPMX19_03908 0.27 -0.6
184,941 + MPMX19_03908 0.27 +0.3
184,941 + MPMX19_03908 0.27 -0.4
184,941 + MPMX19_03908 0.27 -0.1
184,941 + MPMX19_03908 0.27 -0.4
184,941 + MPMX19_03908 0.27 -0.9
184,942 - MPMX19_03908 0.27 +0.4
185,088 + MPMX19_03908 0.41 -0.8
185,089 - MPMX19_03908 0.41 -0.5
185,259 + MPMX19_03908 0.56 -0.3
185,260 - MPMX19_03908 0.56 -0.6
185,283 + MPMX19_03908 0.58 -0.5
185,283 + MPMX19_03908 0.58 +0.5
185,283 + MPMX19_03908 0.58 +0.0
185,283 + MPMX19_03908 0.58 -0.9
185,283 + MPMX19_03908 0.58 +1.0
185,283 + MPMX19_03908 0.58 +0.3
185,284 - MPMX19_03908 0.58 -1.1
185,284 - MPMX19_03908 0.58 -0.4
185,284 - MPMX19_03908 0.58 -0.5
185,284 - MPMX19_03908 0.58 -0.7
185,284 - MPMX19_03908 0.58 +0.9
185,284 - MPMX19_03908 0.58 -0.5
185,457 + MPMX19_03908 0.74 -1.4
185,457 + MPMX19_03908 0.74 -0.4
185,457 + MPMX19_03908 0.74 +0.9
185,457 + MPMX19_03908 0.74 -0.1
185,457 + MPMX19_03908 0.74 -0.5
185,457 + MPMX19_03908 0.74 -1.6
185,457 + MPMX19_03908 0.74 +0.1
185,458 - MPMX19_03908 0.74 +0.1
185,458 - MPMX19_03908 0.74 +0.8
185,458 - MPMX19_03908 0.74 +2.4
185,458 - MPMX19_03908 0.74 -1.1
185,458 - MPMX19_03908 0.74 -2.5
185,458 - MPMX19_03908 0.74 +1.3
185,458 - MPMX19_03908 0.74 -0.4
185,575 - MPMX19_03908 0.85 +0.6
185,598 + MPMX19_03908 0.87 -1.1
185,598 + MPMX19_03908 0.87 -0.5
185,598 + MPMX19_03908 0.87 +0.6
185,598 + MPMX19_03908 0.87 +0.1
185,598 + MPMX19_03908 0.87 -1.8
185,599 - MPMX19_03908 0.87 -0.0
185,599 - MPMX19_03908 0.87 -1.8
185,599 - MPMX19_03908 0.87 +0.4
185,833 + -0.6
185,834 - +0.5
185,834 - +0.2
185,834 - +0.0
185,834 - +1.0
185,834 - +0.4
186,046 + MPMX19_03909 0.25 +0.9
186,046 + MPMX19_03909 0.25 -0.6
186,046 + MPMX19_03909 0.25 +0.5
186,046 + MPMX19_03909 0.25 -0.4
186,046 + MPMX19_03909 0.25 +0.5
186,046 + MPMX19_03909 0.25 -1.5
186,046 + MPMX19_03909 0.25 -1.4
186,046 + MPMX19_03909 0.25 -0.8
186,046 + MPMX19_03909 0.25 -1.0
186,046 + MPMX19_03909 0.25 +1.2
186,047 - MPMX19_03909 0.25 -1.1
186,047 - MPMX19_03909 0.25 +0.9
186,047 - MPMX19_03909 0.25 -1.1
186,047 - MPMX19_03909 0.25 +0.4
186,047 - MPMX19_03909 0.25 +0.9
186,245 - MPMX19_03909 0.43 +1.5
186,245 - MPMX19_03909 0.43 +0.0
186,245 - MPMX19_03909 0.43 +0.3
186,316 + MPMX19_03909 0.50 -1.2
186,316 + MPMX19_03909 0.50 -0.0
186,317 - MPMX19_03909 0.50 -1.0
186,317 - MPMX19_03909 0.50 +0.1
186,317 - MPMX19_03909 0.50 -1.9
186,317 - MPMX19_03909 0.50 -0.1
186,361 + MPMX19_03909 0.54 -0.2
186,361 + MPMX19_03909 0.54 -2.0
186,361 + MPMX19_03909 0.54 +0.6
186,361 + MPMX19_03909 0.54 -0.4
186,361 + MPMX19_03909 0.54 -0.7
186,361 + MPMX19_03909 0.54 -0.1
186,361 + MPMX19_03909 0.54 +0.2
186,361 + MPMX19_03909 0.54 +1.1
186,361 + MPMX19_03909 0.54 -1.6
186,361 + MPMX19_03909 0.54 +0.6
186,361 + MPMX19_03909 0.54 +0.8
186,361 + MPMX19_03909 0.54 -0.8
186,361 + MPMX19_03909 0.54 +0.3
186,361 + MPMX19_03909 0.54 +1.8
186,361 + MPMX19_03909 0.54 -1.3
186,361 + MPMX19_03909 0.54 -0.3
186,361 + MPMX19_03909 0.54 -1.1
186,361 + MPMX19_03909 0.54 -1.0
186,362 - MPMX19_03909 0.54 -0.3
186,362 - MPMX19_03909 0.54 +0.3
186,362 - MPMX19_03909 0.54 -1.4
186,362 - MPMX19_03909 0.54 -1.1
186,362 - MPMX19_03909 0.54 -1.9
186,362 - MPMX19_03909 0.54 -1.1
186,362 - MPMX19_03909 0.54 -1.3
186,362 - MPMX19_03909 0.54 -0.0
186,362 - MPMX19_03909 0.54 -1.5
186,362 - MPMX19_03909 0.54 -1.9
186,362 - MPMX19_03909 0.54 +1.5
186,362 - MPMX19_03909 0.54 -2.1
186,460 + MPMX19_03909 0.63 -0.7
186,460 + MPMX19_03909 0.63 -0.3
186,460 + MPMX19_03909 0.63 +0.4
186,460 + MPMX19_03909 0.63 -1.1
186,460 + MPMX19_03909 0.63 +1.2
186,460 + MPMX19_03909 0.63 +0.6
186,460 + MPMX19_03909 0.63 +1.2
186,460 + MPMX19_03909 0.63 +0.9
186,460 + MPMX19_03909 0.63 -0.6
186,460 + MPMX19_03909 0.63 -2.0
186,460 + MPMX19_03909 0.63 -1.8
186,460 + MPMX19_03909 0.63 -1.6
186,460 + MPMX19_03909 0.63 +1.3
186,460 + MPMX19_03909 0.63 -0.5
186,460 + MPMX19_03909 0.63 +1.7
186,460 + MPMX19_03909 0.63 -0.7
186,460 + MPMX19_03909 0.63 -0.4
186,460 + MPMX19_03909 0.63 -2.1
186,460 + MPMX19_03909 0.63 +1.3
186,460 + MPMX19_03909 0.63 +0.2
186,460 + MPMX19_03909 0.63 +0.2
186,460 + MPMX19_03909 0.63 +0.4
186,460 + MPMX19_03909 0.63 -2.5
186,460 + MPMX19_03909 0.63 -1.7
186,460 + MPMX19_03909 0.63 -0.5
186,460 + MPMX19_03909 0.63 +0.9
186,460 + MPMX19_03909 0.63 -1.3
186,460 + MPMX19_03909 0.63 -1.5
186,460 + MPMX19_03909 0.63 -0.8
186,460 + MPMX19_03909 0.63 -0.3
186,460 + MPMX19_03909 0.63 +0.8
186,460 + MPMX19_03909 0.63 -0.8
186,460 + MPMX19_03909 0.63 -1.3
186,460 + MPMX19_03909 0.63 -1.8
186,460 + MPMX19_03909 0.63 -1.0
186,460 + MPMX19_03909 0.63 -1.1
186,460 + MPMX19_03909 0.63 -0.5
186,460 + MPMX19_03909 0.63 +0.2
186,461 - MPMX19_03909 0.63 -0.3
186,461 - MPMX19_03909 0.63 -0.3
186,461 - MPMX19_03909 0.63 +0.4
186,461 - MPMX19_03909 0.63 -1.5
186,461 - MPMX19_03909 0.63 +0.6
186,461 - MPMX19_03909 0.63 -0.1
186,461 - MPMX19_03909 0.63 -0.4
186,461 - MPMX19_03909 0.63 +0.0
186,461 - MPMX19_03909 0.63 -1.1
186,461 - MPMX19_03909 0.63 -1.3
186,461 - MPMX19_03909 0.63 -1.3
186,461 - MPMX19_03909 0.63 +1.5
186,461 - MPMX19_03909 0.63 -0.4
186,461 - MPMX19_03909 0.63 -0.6
186,461 - MPMX19_03909 0.63 +0.4
186,461 - MPMX19_03909 0.63 -0.8
186,461 - MPMX19_03909 0.63 -2.0
186,461 - MPMX19_03909 0.63 -0.1
186,461 - MPMX19_03909 0.63 +1.1
186,461 - MPMX19_03909 0.63 -1.9
186,461 - MPMX19_03909 0.63 +0.1
186,461 - MPMX19_03909 0.63 -1.1
186,461 - MPMX19_03909 0.63 -1.0
186,461 - MPMX19_03909 0.63 -1.3
186,461 - MPMX19_03909 0.63 +0.8
186,461 - MPMX19_03909 0.63 -0.8
186,461 - MPMX19_03909 0.63 +0.9
186,461 - MPMX19_03909 0.63 -0.7
186,461 - MPMX19_03909 0.63 -0.4
186,461 - MPMX19_03909 0.63 -2.2
186,461 - MPMX19_03909 0.63 +0.2
186,727 + MPMX19_03909 0.87 -0.6
186,727 + MPMX19_03909 0.87 +0.3
186,727 + MPMX19_03909 0.87 -1.0
186,727 + MPMX19_03909 0.87 -0.9
186,727 + MPMX19_03909 0.87 -1.5
186,727 + MPMX19_03909 0.87 -0.2
186,727 + MPMX19_03909 0.87 -0.2
186,728 - MPMX19_03909 0.87 +1.4
186,728 - MPMX19_03909 0.87 -0.3
186,728 - MPMX19_03909 0.87 +0.0
186,728 - MPMX19_03909 0.87 -1.3
186,728 - MPMX19_03909 0.87 -0.8
186,728 - MPMX19_03909 0.87 +0.9

Or see this region's nucleotide sequence