Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03901

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03900 and MPMX19_03901 are separated by 131 nucleotidesMPMX19_03901 and MPMX19_03902 overlap by 4 nucleotides MPMX19_03900: MPMX19_03900 - Hca operon transcriptional activator HcaR, at 175,260 to 176,150 _03900 MPMX19_03901: MPMX19_03901 - Glyoxylate/hydroxypyruvate reductase B, at 176,282 to 177,295 _03901 MPMX19_03902: MPMX19_03902 - D-galactonate dehydratase, at 177,292 to 178,512 _03902 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 176.026 kb on - strand, within MPMX19_03900at 176.073 kb on + strandat 176.235 kb on + strandat 176.666 kb on + strand, within MPMX19_03901at 176.667 kb on - strand, within MPMX19_03901at 176.667 kb on - strand, within MPMX19_03901at 176.970 kb on + strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.006 kb on - strand, within MPMX19_03901at 177.057 kb on - strand, within MPMX19_03901at 177.057 kb on - strand, within MPMX19_03901at 177.063 kb on - strand, within MPMX19_03901at 177.179 kb on + strand, within MPMX19_03901at 177.180 kb on - strand, within MPMX19_03901at 177.180 kb on - strand, within MPMX19_03901at 177.180 kb on - strand, within MPMX19_03901at 177.180 kb on - strand, within MPMX19_03901at 177.407 kb on + strandat 177.407 kb on + strandat 177.407 kb on + strandat 177.407 kb on + strandat 177.407 kb on + strandat 177.407 kb on + strandat 177.407 kb on + strandat 177.408 kb on - strandat 177.408 kb on - strandat 177.408 kb on - strandat 177.408 kb on - strandat 177.408 kb on - strandat 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.430 kb on + strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.431 kb on - strand, within MPMX19_03902at 177.565 kb on + strand, within MPMX19_03902at 177.565 kb on + strand, within MPMX19_03902at 177.565 kb on + strand, within MPMX19_03902at 177.565 kb on + strand, within MPMX19_03902at 177.565 kb on + strand, within MPMX19_03902at 177.566 kb on - strand, within MPMX19_03902at 177.566 kb on - strand, within MPMX19_03902at 177.566 kb on - strand, within MPMX19_03902at 177.568 kb on + strand, within MPMX19_03902at 177.568 kb on + strand, within MPMX19_03902at 177.568 kb on + strand, within MPMX19_03902at 177.568 kb on + strand, within MPMX19_03902at 177.569 kb on - strand, within MPMX19_03902at 177.569 kb on - strand, within MPMX19_03902at 177.700 kb on + strand, within MPMX19_03902at 177.700 kb on + strand, within MPMX19_03902at 177.700 kb on + strand, within MPMX19_03902at 177.701 kb on - strand, within MPMX19_03902at 177.701 kb on - strand, within MPMX19_03902at 177.701 kb on - strand, within MPMX19_03902at 177.701 kb on - strand, within MPMX19_03902at 177.701 kb on - strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.736 kb on + strand, within MPMX19_03902at 177.737 kb on - strand, within MPMX19_03902at 177.737 kb on - strand, within MPMX19_03902at 177.737 kb on - strand, within MPMX19_03902at 177.737 kb on - strand, within MPMX19_03902at 177.737 kb on - strand, within MPMX19_03902at 177.796 kb on + strand, within MPMX19_03902at 177.797 kb on - strand, within MPMX19_03902at 177.797 kb on - strand, within MPMX19_03902at 177.797 kb on - strand, within MPMX19_03902at 177.797 kb on - strand, within MPMX19_03902at 177.797 kb on - strand, within MPMX19_03902at 177.826 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.918 kb on + strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.919 kb on - strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.967 kb on + strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902at 177.968 kb on - strand, within MPMX19_03902

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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175,566 + MPMX19_03900 0.34 -0.9
175,566 + MPMX19_03900 0.34 +1.2
175,566 + MPMX19_03900 0.34 -0.8
175,566 + MPMX19_03900 0.34 +2.2
175,566 + MPMX19_03900 0.34 -0.1
175,566 + MPMX19_03900 0.34 +0.2
175,566 + MPMX19_03900 0.34 +0.2
175,566 + MPMX19_03900 0.34 -0.1
175,566 + MPMX19_03900 0.34 -0.1
175,566 + MPMX19_03900 0.34 -0.4
175,567 - MPMX19_03900 0.34 -1.0
175,567 - MPMX19_03900 0.34 -1.0
175,567 - MPMX19_03900 0.34 -0.3
175,567 - MPMX19_03900 0.34 -1.4
175,567 - MPMX19_03900 0.34 +0.0
175,866 + MPMX19_03900 0.68 -0.1
175,866 + MPMX19_03900 0.68 -0.1
175,866 + MPMX19_03900 0.68 +0.3
175,866 + MPMX19_03900 0.68 +1.2
175,866 + MPMX19_03900 0.68 +0.2
176,026 - MPMX19_03900 0.86 +1.5
176,073 + -2.5
176,235 + +0.2
176,666 + MPMX19_03901 0.38 -0.6
176,667 - MPMX19_03901 0.38 -1.0
176,667 - MPMX19_03901 0.38 -0.6
176,970 + MPMX19_03901 0.68 -1.2
176,971 - MPMX19_03901 0.68 -0.5
176,971 - MPMX19_03901 0.68 +0.3
176,971 - MPMX19_03901 0.68 +0.2
176,971 - MPMX19_03901 0.68 +0.7
176,971 - MPMX19_03901 0.68 +0.6
176,971 - MPMX19_03901 0.68 -0.2
177,005 + MPMX19_03901 0.71 -0.4
177,005 + MPMX19_03901 0.71 +0.6
177,005 + MPMX19_03901 0.71 +0.7
177,006 - MPMX19_03901 0.71 -0.9
177,057 - MPMX19_03901 0.76 +0.8
177,057 - MPMX19_03901 0.76 +0.1
177,063 - MPMX19_03901 0.77 +1.0
177,179 + MPMX19_03901 0.88 -1.1
177,180 - MPMX19_03901 0.89 -0.4
177,180 - MPMX19_03901 0.89 +0.1
177,180 - MPMX19_03901 0.89 -1.1
177,180 - MPMX19_03901 0.89 +0.8
177,407 + -1.1
177,407 + -1.5
177,407 + -1.0
177,407 + -0.6
177,407 + -1.0
177,407 + +0.4
177,407 + -0.0
177,408 - +0.2
177,408 - -0.1
177,408 - -1.4
177,408 - -0.2
177,408 - -0.3
177,430 + MPMX19_03902 0.11 +0.8
177,430 + MPMX19_03902 0.11 -1.0
177,430 + MPMX19_03902 0.11 +1.0
177,430 + MPMX19_03902 0.11 -0.4
177,430 + MPMX19_03902 0.11 +1.2
177,430 + MPMX19_03902 0.11 -1.1
177,430 + MPMX19_03902 0.11 -0.4
177,430 + MPMX19_03902 0.11 -1.2
177,430 + MPMX19_03902 0.11 -0.0
177,430 + MPMX19_03902 0.11 +0.5
177,431 - MPMX19_03902 0.11 -0.7
177,431 - MPMX19_03902 0.11 -1.0
177,431 - MPMX19_03902 0.11 +0.5
177,431 - MPMX19_03902 0.11 +1.0
177,431 - MPMX19_03902 0.11 -0.4
177,431 - MPMX19_03902 0.11 +0.0
177,431 - MPMX19_03902 0.11 -0.3
177,431 - MPMX19_03902 0.11 +0.6
177,431 - MPMX19_03902 0.11 -0.7
177,431 - MPMX19_03902 0.11 -0.7
177,565 + MPMX19_03902 0.22 -1.5
177,565 + MPMX19_03902 0.22 -1.4
177,565 + MPMX19_03902 0.22 -0.0
177,565 + MPMX19_03902 0.22 -0.8
177,565 + MPMX19_03902 0.22 -0.6
177,566 - MPMX19_03902 0.22 -0.1
177,566 - MPMX19_03902 0.22 -0.2
177,566 - MPMX19_03902 0.22 -0.6
177,568 + MPMX19_03902 0.23 -1.4
177,568 + MPMX19_03902 0.23 -0.8
177,568 + MPMX19_03902 0.23 +0.8
177,568 + MPMX19_03902 0.23 +1.2
177,569 - MPMX19_03902 0.23 -1.1
177,569 - MPMX19_03902 0.23 -1.2
177,700 + MPMX19_03902 0.33 +1.0
177,700 + MPMX19_03902 0.33 +2.2
177,700 + MPMX19_03902 0.33 +0.4
177,701 - MPMX19_03902 0.33 -1.1
177,701 - MPMX19_03902 0.33 +0.2
177,701 - MPMX19_03902 0.33 -0.4
177,701 - MPMX19_03902 0.33 -1.5
177,701 - MPMX19_03902 0.33 +0.7
177,736 + MPMX19_03902 0.36 -0.4
177,736 + MPMX19_03902 0.36 -3.8
177,736 + MPMX19_03902 0.36 +1.0
177,736 + MPMX19_03902 0.36 -1.4
177,736 + MPMX19_03902 0.36 -1.8
177,736 + MPMX19_03902 0.36 -1.4
177,736 + MPMX19_03902 0.36 -0.4
177,736 + MPMX19_03902 0.36 +0.4
177,736 + MPMX19_03902 0.36 +1.1
177,736 + MPMX19_03902 0.36 +1.2
177,736 + MPMX19_03902 0.36 -0.8
177,737 - MPMX19_03902 0.36 -1.7
177,737 - MPMX19_03902 0.36 +1.4
177,737 - MPMX19_03902 0.36 -1.2
177,737 - MPMX19_03902 0.36 +1.1
177,737 - MPMX19_03902 0.36 -0.0
177,796 + MPMX19_03902 0.41 -2.0
177,797 - MPMX19_03902 0.41 +2.2
177,797 - MPMX19_03902 0.41 +0.2
177,797 - MPMX19_03902 0.41 -0.2
177,797 - MPMX19_03902 0.41 +0.5
177,797 - MPMX19_03902 0.41 +1.1
177,826 + MPMX19_03902 0.44 -1.2
177,918 + MPMX19_03902 0.51 +0.6
177,918 + MPMX19_03902 0.51 -1.5
177,918 + MPMX19_03902 0.51 -0.5
177,918 + MPMX19_03902 0.51 -0.4
177,918 + MPMX19_03902 0.51 -1.5
177,918 + MPMX19_03902 0.51 -0.4
177,918 + MPMX19_03902 0.51 +4.0
177,919 - MPMX19_03902 0.51 -0.8
177,919 - MPMX19_03902 0.51 -1.0
177,919 - MPMX19_03902 0.51 +0.5
177,919 - MPMX19_03902 0.51 -1.6
177,919 - MPMX19_03902 0.51 +1.9
177,919 - MPMX19_03902 0.51 -0.7
177,919 - MPMX19_03902 0.51 -0.6
177,919 - MPMX19_03902 0.51 -0.4
177,919 - MPMX19_03902 0.51 -0.4
177,919 - MPMX19_03902 0.51 -0.4
177,919 - MPMX19_03902 0.51 -1.0
177,919 - MPMX19_03902 0.51 -0.9
177,919 - MPMX19_03902 0.51 +1.0
177,967 + MPMX19_03902 0.55 +0.6
177,967 + MPMX19_03902 0.55 +1.0
177,967 + MPMX19_03902 0.55 -0.8
177,967 + MPMX19_03902 0.55 +0.6
177,967 + MPMX19_03902 0.55 -0.4
177,967 + MPMX19_03902 0.55 +1.2
177,967 + MPMX19_03902 0.55 -0.4
177,967 + MPMX19_03902 0.55 -1.3
177,967 + MPMX19_03902 0.55 +0.5
177,968 - MPMX19_03902 0.55 -1.9
177,968 - MPMX19_03902 0.55 -1.6
177,968 - MPMX19_03902 0.55 -0.5
177,968 - MPMX19_03902 0.55 -1.4
177,968 - MPMX19_03902 0.55 +0.6
177,968 - MPMX19_03902 0.55 -0.4
177,968 - MPMX19_03902 0.55 -1.0
177,968 - MPMX19_03902 0.55 -0.0
177,968 - MPMX19_03902 0.55 +0.5
177,968 - MPMX19_03902 0.55 +0.8
177,968 - MPMX19_03902 0.55 -0.4
177,968 - MPMX19_03902 0.55 +0.1
177,968 - MPMX19_03902 0.55 +0.2
177,968 - MPMX19_03902 0.55 -1.0
177,968 - MPMX19_03902 0.55 +0.4
177,968 - MPMX19_03902 0.55 -0.7

Or see this region's nucleotide sequence