Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03899 and MPMX19_03900 are separated by 314 nucleotides MPMX19_03900 and MPMX19_03901 are separated by 131 nucleotides
MPMX19_03899: MPMX19_03899 - Ferrichrome receptor FcuA, at 172,429 to 174,945
_03899
MPMX19_03900: MPMX19_03900 - Hca operon transcriptional activator HcaR, at 175,260 to 176,150
_03900
MPMX19_03901: MPMX19_03901 - Glyoxylate/hydroxypyruvate reductase B, at 176,282 to 177,295
_03901
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.320 kb on + strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.321 kb on - strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.407 kb on + strand, within MPMX19_03899 at 174.408 kb on - strand, within MPMX19_03899 at 174.555 kb on - strand, within MPMX19_03899 at 174.937 kb on + strand at 174.938 kb on - strand at 174.938 kb on - strand at 174.938 kb on - strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.945 kb on + strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.946 kb on - strand at 174.948 kb on + strand at 174.949 kb on - strand at 175.031 kb on + strand at 175.032 kb on - strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand at 175.035 kb on + strand at 175.035 kb on + strand at 175.035 kb on + strand at 175.036 kb on - strand at 175.142 kb on - strand at 175.226 kb on + strand at 175.226 kb on + strand at 175.227 kb on - strand at 175.227 kb on - strand at 175.227 kb on - strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.244 kb on + strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.245 kb on - strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.248 kb on + strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.249 kb on - strand at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.566 kb on + strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.567 kb on - strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 175.866 kb on + strand, within MPMX19_03900 at 176.026 kb on - strand, within MPMX19_03900 at 176.073 kb on + strand at 176.235 kb on + strand at 176.666 kb on + strand, within MPMX19_03901 at 176.667 kb on - strand, within MPMX19_03901 at 176.667 kb on - strand, within MPMX19_03901 at 176.970 kb on + strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 176.971 kb on - strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.005 kb on + strand, within MPMX19_03901 at 177.006 kb on - strand, within MPMX19_03901 at 177.057 kb on - strand, within MPMX19_03901 at 177.057 kb on - strand, within MPMX19_03901 at 177.063 kb on - strand, within MPMX19_03901
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 174,320 + MPMX19_03899 0.75 -0.8 174,320 + MPMX19_03899 0.75 +1.0 174,320 + MPMX19_03899 0.75 +0.3 174,320 + MPMX19_03899 0.75 +0.2 174,320 + MPMX19_03899 0.75 -0.2 174,320 + MPMX19_03899 0.75 -1.1 174,320 + MPMX19_03899 0.75 +0.2 174,320 + MPMX19_03899 0.75 -1.1 174,320 + MPMX19_03899 0.75 -1.6 174,321 - MPMX19_03899 0.75 -0.3 174,321 - MPMX19_03899 0.75 -1.5 174,321 - MPMX19_03899 0.75 -1.1 174,321 - MPMX19_03899 0.75 +2.0 174,321 - MPMX19_03899 0.75 +0.2 174,321 - MPMX19_03899 0.75 +1.2 174,321 - MPMX19_03899 0.75 +1.9 174,321 - MPMX19_03899 0.75 -1.4 174,321 - MPMX19_03899 0.75 -0.5 174,321 - MPMX19_03899 0.75 -0.3 174,321 - MPMX19_03899 0.75 -1.1 174,321 - MPMX19_03899 0.75 +0.0 174,407 + MPMX19_03899 0.79 +0.5 174,407 + MPMX19_03899 0.79 -0.1 174,407 + MPMX19_03899 0.79 +0.8 174,407 + MPMX19_03899 0.79 -0.9 174,408 - MPMX19_03899 0.79 +0.5 174,555 - MPMX19_03899 0.84 -2.2 174,937 + -0.1 174,938 - -1.0 174,938 - -0.8 174,938 - -0.1 174,945 + +0.8 174,945 + -0.0 174,945 + +0.2 174,945 + +0.1 174,945 + -0.3 174,945 + -1.1 174,945 + -0.3 174,945 + +0.1 174,945 + -1.4 174,945 + -0.4 174,946 - -0.5 174,946 - -2.7 174,946 - +0.6 174,946 - -1.0 174,946 - +0.2 174,946 - +1.5 174,946 - +0.6 174,946 - +0.9 174,946 - -1.1 174,946 - +0.9 174,948 + -0.8 174,949 - -0.6 175,031 + +0.1 175,032 - +0.9 175,033 + -0.9 175,033 + +1.2 175,034 - +0.2 175,035 + -1.8 175,035 + +1.1 175,035 + +0.0 175,036 - -0.4 175,142 - -0.4 175,226 + -2.0 175,226 + +0.9 175,227 - +0.2 175,227 - -1.0 175,227 - +0.9 175,244 + +1.1 175,244 + +0.5 175,244 + -0.4 175,244 + -1.8 175,244 + -1.3 175,244 + -0.7 175,244 + +0.8 175,244 + -0.1 175,244 + +1.2 175,244 + +0.2 175,244 + +0.2 175,244 + -1.0 175,244 + +0.4 175,244 + -1.8 175,244 + -0.4 175,244 + -1.0 175,244 + -0.8 175,245 - -0.0 175,245 - -1.4 175,245 - -0.6 175,245 - -1.1 175,245 - +0.2 175,245 - -1.2 175,245 - -0.1 175,245 - -0.9 175,245 - -0.3 175,245 - +0.4 175,245 - -0.8 175,245 - +0.1 175,248 + -0.9 175,248 + +0.4 175,248 + -1.9 175,248 + -0.9 175,248 + +0.3 175,248 + +0.0 175,248 + +0.0 175,249 - -0.4 175,249 - +0.2 175,249 - +0.3 175,249 - -1.0 175,249 - -0.6 175,249 - +0.0 175,249 - +0.6 175,249 - -0.3 175,249 - +0.1 175,566 + MPMX19_03900 0.34 -0.9 175,566 + MPMX19_03900 0.34 +1.2 175,566 + MPMX19_03900 0.34 -0.8 175,566 + MPMX19_03900 0.34 +2.2 175,566 + MPMX19_03900 0.34 -0.1 175,566 + MPMX19_03900 0.34 +0.2 175,566 + MPMX19_03900 0.34 +0.2 175,566 + MPMX19_03900 0.34 -0.1 175,566 + MPMX19_03900 0.34 -0.1 175,566 + MPMX19_03900 0.34 -0.4 175,567 - MPMX19_03900 0.34 -1.0 175,567 - MPMX19_03900 0.34 -1.0 175,567 - MPMX19_03900 0.34 -0.3 175,567 - MPMX19_03900 0.34 -1.4 175,567 - MPMX19_03900 0.34 +0.0 175,866 + MPMX19_03900 0.68 -0.1 175,866 + MPMX19_03900 0.68 -0.1 175,866 + MPMX19_03900 0.68 +0.3 175,866 + MPMX19_03900 0.68 +1.2 175,866 + MPMX19_03900 0.68 +0.2 176,026 - MPMX19_03900 0.86 +1.5 176,073 + -2.5 176,235 + +0.2 176,666 + MPMX19_03901 0.38 -0.6 176,667 - MPMX19_03901 0.38 -1.0 176,667 - MPMX19_03901 0.38 -0.6 176,970 + MPMX19_03901 0.68 -1.2 176,971 - MPMX19_03901 0.68 -0.5 176,971 - MPMX19_03901 0.68 +0.3 176,971 - MPMX19_03901 0.68 +0.2 176,971 - MPMX19_03901 0.68 +0.7 176,971 - MPMX19_03901 0.68 +0.6 176,971 - MPMX19_03901 0.68 -0.2 177,005 + MPMX19_03901 0.71 -0.4 177,005 + MPMX19_03901 0.71 +0.6 177,005 + MPMX19_03901 0.71 +0.7 177,006 - MPMX19_03901 0.71 -0.9 177,057 - MPMX19_03901 0.76 +0.8 177,057 - MPMX19_03901 0.76 +0.1 177,063 - MPMX19_03901 0.77 +1.0
Or see this region's nucleotide sequence