Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03882

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03881 and MPMX19_03882 are separated by 21 nucleotidesMPMX19_03882 and MPMX19_03883 are separated by 87 nucleotides MPMX19_03881: MPMX19_03881 - hypothetical protein, at 136,336 to 137,658 _03881 MPMX19_03882: MPMX19_03882 - hypothetical protein, at 137,680 to 139,572 _03882 MPMX19_03883: MPMX19_03883 - hypothetical protein, at 139,660 to 141,135 _03883 Position (kb) 137 138 139 140Strain fitness (log2 ratio) -3 -2 -1 0 1at 136.708 kb on + strand, within MPMX19_03881at 136.708 kb on + strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.218 kb on + strand, within MPMX19_03881at 137.218 kb on + strand, within MPMX19_03881at 137.219 kb on - strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.201 kb on - strand, within MPMX19_03882at 138.251 kb on + strand, within MPMX19_03882at 138.252 kb on - strand, within MPMX19_03882at 138.344 kb on + strand, within MPMX19_03882at 138.344 kb on + strand, within MPMX19_03882at 138.345 kb on - strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.444 kb on - strand, within MPMX19_03882at 138.444 kb on - strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.112 kb on + strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.113 kb on - strand, within MPMX19_03882at 139.584 kb on + strandat 139.584 kb on + strandat 139.585 kb on - strandat 139.585 kb on - strandat 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.398 kb on + strand, within MPMX19_03883at 140.398 kb on + strand, within MPMX19_03883at 140.399 kb on - strand, within MPMX19_03883

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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136,708 + MPMX19_03881 0.28 -0.8
136,708 + MPMX19_03881 0.28 -0.1
136,709 - MPMX19_03881 0.28 -0.4
136,709 - MPMX19_03881 0.28 -0.0
136,709 - MPMX19_03881 0.28 +0.4
136,867 + MPMX19_03881 0.40 +0.8
136,867 + MPMX19_03881 0.40 -0.2
136,867 + MPMX19_03881 0.40 -0.1
136,867 + MPMX19_03881 0.40 -0.8
136,867 + MPMX19_03881 0.40 -0.7
136,868 - MPMX19_03881 0.40 -0.2
136,868 - MPMX19_03881 0.40 -0.9
136,868 - MPMX19_03881 0.40 -0.7
136,951 + MPMX19_03881 0.46 +0.2
136,951 + MPMX19_03881 0.46 -0.8
136,951 + MPMX19_03881 0.46 -0.1
136,951 + MPMX19_03881 0.46 +0.6
136,951 + MPMX19_03881 0.46 +0.5
136,951 + MPMX19_03881 0.46 -0.5
136,951 + MPMX19_03881 0.46 -1.1
136,951 + MPMX19_03881 0.46 -0.0
136,952 - MPMX19_03881 0.47 +0.1
136,952 - MPMX19_03881 0.47 +0.8
136,952 - MPMX19_03881 0.47 +0.5
136,952 - MPMX19_03881 0.47 +0.4
136,952 - MPMX19_03881 0.47 -0.9
136,952 - MPMX19_03881 0.47 +0.2
136,952 - MPMX19_03881 0.47 -1.6
136,952 - MPMX19_03881 0.47 +0.0
136,952 - MPMX19_03881 0.47 +0.9
137,011 + MPMX19_03881 0.51 -0.7
137,011 + MPMX19_03881 0.51 -0.4
137,011 + MPMX19_03881 0.51 -0.0
137,011 + MPMX19_03881 0.51 -0.1
137,012 - MPMX19_03881 0.51 -0.3
137,012 - MPMX19_03881 0.51 +0.1
137,012 - MPMX19_03881 0.51 -1.1
137,012 - MPMX19_03881 0.51 -1.2
137,014 + MPMX19_03881 0.51 -0.7
137,014 + MPMX19_03881 0.51 -0.8
137,014 + MPMX19_03881 0.51 +1.0
137,014 + MPMX19_03881 0.51 -1.0
137,014 + MPMX19_03881 0.51 -0.7
137,014 + MPMX19_03881 0.51 -0.8
137,014 + MPMX19_03881 0.51 -1.7
137,015 - MPMX19_03881 0.51 -1.1
137,015 - MPMX19_03881 0.51 -0.3
137,015 - MPMX19_03881 0.51 +0.2
137,015 - MPMX19_03881 0.51 -1.1
137,015 - MPMX19_03881 0.51 -1.1
137,015 - MPMX19_03881 0.51 -0.7
137,218 + MPMX19_03881 0.67 -0.8
137,218 + MPMX19_03881 0.67 +0.5
137,219 - MPMX19_03881 0.67 +0.6
137,311 + MPMX19_03881 0.74 -1.8
137,311 + MPMX19_03881 0.74 +0.3
137,311 + MPMX19_03881 0.74 -0.5
137,311 + MPMX19_03881 0.74 -1.1
137,311 + MPMX19_03881 0.74 -2.9
137,311 + MPMX19_03881 0.74 -1.0
137,311 + MPMX19_03881 0.74 -0.9
137,311 + MPMX19_03881 0.74 -0.1
137,312 - MPMX19_03881 0.74 +1.0
137,312 - MPMX19_03881 0.74 -0.6
137,312 - MPMX19_03881 0.74 +0.1
137,424 + MPMX19_03881 0.82 -2.2
137,424 + MPMX19_03881 0.82 +0.1
137,424 + MPMX19_03881 0.82 -0.1
137,479 + MPMX19_03881 0.86 -2.2
137,479 + MPMX19_03881 0.86 -0.3
137,479 + MPMX19_03881 0.86 -0.1
137,479 + MPMX19_03881 0.86 +0.5
137,480 - MPMX19_03881 0.86 +0.8
137,480 - MPMX19_03881 0.86 +0.2
137,480 - MPMX19_03881 0.86 +0.9
137,480 - MPMX19_03881 0.86 +0.5
137,480 - MPMX19_03881 0.86 -0.0
137,480 - MPMX19_03881 0.86 +0.7
137,480 - MPMX19_03881 0.86 -1.4
138,134 + MPMX19_03882 0.24 +0.7
138,134 + MPMX19_03882 0.24 +0.5
138,134 + MPMX19_03882 0.24 -0.4
138,134 + MPMX19_03882 0.24 -0.8
138,134 + MPMX19_03882 0.24 -0.8
138,135 - MPMX19_03882 0.24 -2.1
138,135 - MPMX19_03882 0.24 -2.1
138,135 - MPMX19_03882 0.24 -0.1
138,135 - MPMX19_03882 0.24 +0.3
138,201 - MPMX19_03882 0.28 +1.5
138,251 + MPMX19_03882 0.30 +0.6
138,252 - MPMX19_03882 0.30 +0.2
138,344 + MPMX19_03882 0.35 +0.5
138,344 + MPMX19_03882 0.35 -0.5
138,345 - MPMX19_03882 0.35 -1.9
138,443 + MPMX19_03882 0.40 -0.3
138,443 + MPMX19_03882 0.40 -0.5
138,443 + MPMX19_03882 0.40 -0.1
138,443 + MPMX19_03882 0.40 -0.2
138,444 - MPMX19_03882 0.40 -1.9
138,444 - MPMX19_03882 0.40 +0.2
138,635 + MPMX19_03882 0.50 +0.4
138,635 + MPMX19_03882 0.50 -0.6
138,635 + MPMX19_03882 0.50 -0.7
138,635 + MPMX19_03882 0.50 -1.4
138,636 - MPMX19_03882 0.51 -1.9
138,636 - MPMX19_03882 0.51 +0.6
138,636 - MPMX19_03882 0.51 +0.5
138,636 - MPMX19_03882 0.51 -0.3
138,636 - MPMX19_03882 0.51 +0.6
138,636 - MPMX19_03882 0.51 -1.6
138,636 - MPMX19_03882 0.51 +0.0
138,636 - MPMX19_03882 0.51 -0.3
138,650 + MPMX19_03882 0.51 -0.9
138,650 + MPMX19_03882 0.51 -0.5
138,650 + MPMX19_03882 0.51 -0.1
138,650 + MPMX19_03882 0.51 -0.1
138,650 + MPMX19_03882 0.51 +0.9
138,650 + MPMX19_03882 0.51 +1.1
138,650 + MPMX19_03882 0.51 -0.4
138,650 + MPMX19_03882 0.51 -1.0
138,650 + MPMX19_03882 0.51 -0.6
138,650 + MPMX19_03882 0.51 -0.3
138,650 + MPMX19_03882 0.51 +1.4
138,651 - MPMX19_03882 0.51 -0.4
138,651 - MPMX19_03882 0.51 -0.6
138,651 - MPMX19_03882 0.51 -0.5
138,651 - MPMX19_03882 0.51 +0.0
138,651 - MPMX19_03882 0.51 -0.5
138,651 - MPMX19_03882 0.51 -1.6
138,651 - MPMX19_03882 0.51 -0.1
138,651 - MPMX19_03882 0.51 -1.1
138,651 - MPMX19_03882 0.51 -1.1
138,651 - MPMX19_03882 0.51 -0.4
138,651 - MPMX19_03882 0.51 -1.3
139,112 + MPMX19_03882 0.76 +1.4
139,112 + MPMX19_03882 0.76 -0.3
139,112 + MPMX19_03882 0.76 +0.7
139,112 + MPMX19_03882 0.76 +0.9
139,112 + MPMX19_03882 0.76 +0.2
139,112 + MPMX19_03882 0.76 -0.3
139,112 + MPMX19_03882 0.76 +0.2
139,112 + MPMX19_03882 0.76 -1.0
139,113 - MPMX19_03882 0.76 -1.1
139,113 - MPMX19_03882 0.76 +0.4
139,113 - MPMX19_03882 0.76 +0.2
139,113 - MPMX19_03882 0.76 -1.5
139,113 - MPMX19_03882 0.76 -1.6
139,113 - MPMX19_03882 0.76 -1.8
139,113 - MPMX19_03882 0.76 +0.3
139,584 + +0.3
139,584 + +0.3
139,585 - -0.6
139,585 - -0.4
140,255 - MPMX19_03883 0.40 -0.8
140,255 - MPMX19_03883 0.40 -0.2
140,255 - MPMX19_03883 0.40 +0.3
140,255 - MPMX19_03883 0.40 -0.0
140,359 + MPMX19_03883 0.47 -1.5
140,359 + MPMX19_03883 0.47 -1.1
140,359 + MPMX19_03883 0.47 -0.8
140,359 + MPMX19_03883 0.47 -0.8
140,360 - MPMX19_03883 0.47 +0.8
140,360 - MPMX19_03883 0.47 -0.6
140,360 - MPMX19_03883 0.47 +0.8
140,360 - MPMX19_03883 0.47 -1.7
140,360 - MPMX19_03883 0.47 +0.5
140,398 + MPMX19_03883 0.50 +0.2
140,398 + MPMX19_03883 0.50 +0.2
140,399 - MPMX19_03883 0.50 -1.5

Or see this region's nucleotide sequence