Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03878 and MPMX19_03879 are separated by 2 nucleotides MPMX19_03879 and MPMX19_03880 are separated by 41 nucleotides
MPMX19_03878: MPMX19_03878 - hypothetical protein, at 128,771 to 131,509
_03878
MPMX19_03879: MPMX19_03879 - hypothetical protein, at 131,512 to 133,281
_03879
MPMX19_03880: MPMX19_03880 - hypothetical protein, at 133,323 to 136,073
_03880
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.615 kb on + strand, within MPMX19_03878 at 130.616 kb on - strand, within MPMX19_03878 at 130.616 kb on - strand, within MPMX19_03878 at 130.673 kb on + strand, within MPMX19_03878 at 130.775 kb on + strand, within MPMX19_03878 at 130.775 kb on + strand, within MPMX19_03878 at 130.775 kb on + strand, within MPMX19_03878 at 130.775 kb on + strand, within MPMX19_03878 at 130.776 kb on - strand, within MPMX19_03878 at 130.776 kb on - strand, within MPMX19_03878 at 130.776 kb on - strand, within MPMX19_03878 at 130.793 kb on + strand, within MPMX19_03878 at 130.793 kb on + strand, within MPMX19_03878 at 130.813 kb on + strand, within MPMX19_03878 at 130.813 kb on + strand, within MPMX19_03878 at 130.813 kb on + strand, within MPMX19_03878 at 130.850 kb on + strand, within MPMX19_03878 at 130.850 kb on + strand, within MPMX19_03878 at 130.851 kb on - strand, within MPMX19_03878 at 130.991 kb on + strand, within MPMX19_03878 at 130.992 kb on - strand, within MPMX19_03878 at 130.992 kb on - strand, within MPMX19_03878 at 131.124 kb on + strand, within MPMX19_03878 at 131.189 kb on + strand, within MPMX19_03878 at 131.189 kb on + strand, within MPMX19_03878 at 131.189 kb on + strand, within MPMX19_03878 at 131.190 kb on - strand, within MPMX19_03878 at 131.190 kb on - strand, within MPMX19_03878 at 131.190 kb on - strand, within MPMX19_03878 at 131.240 kb on + strand at 131.240 kb on + strand at 131.240 kb on + strand at 131.241 kb on - strand at 131.241 kb on - strand at 131.241 kb on - strand at 131.241 kb on - strand at 131.286 kb on - strand at 131.477 kb on + strand at 131.477 kb on + strand at 131.477 kb on + strand at 131.477 kb on + strand at 131.477 kb on + strand at 131.477 kb on + strand at 131.478 kb on - strand at 131.478 kb on - strand at 131.478 kb on - strand at 131.478 kb on - strand at 131.596 kb on + strand at 132.046 kb on + strand, within MPMX19_03879 at 132.046 kb on + strand, within MPMX19_03879 at 132.047 kb on - strand, within MPMX19_03879 at 132.047 kb on - strand, within MPMX19_03879 at 132.047 kb on - strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.169 kb on + strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.170 kb on - strand, within MPMX19_03879 at 132.187 kb on + strand, within MPMX19_03879 at 132.187 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.412 kb on + strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.413 kb on - strand, within MPMX19_03879 at 132.537 kb on + strand, within MPMX19_03879 at 132.538 kb on - strand, within MPMX19_03879 at 132.538 kb on - strand, within MPMX19_03879 at 132.591 kb on - strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.717 kb on + strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.718 kb on - strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.736 kb on + strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.737 kb on - strand, within MPMX19_03879 at 132.760 kb on + strand, within MPMX19_03879 at 132.760 kb on + strand, within MPMX19_03879 at 132.760 kb on + strand, within MPMX19_03879 at 132.760 kb on + strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 132.761 kb on - strand, within MPMX19_03879 at 133.522 kb on + strand at 133.523 kb on - strand at 133.669 kb on + strand, within MPMX19_03880 at 133.670 kb on - strand, within MPMX19_03880 at 133.670 kb on - strand, within MPMX19_03880 at 133.670 kb on - strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.002 kb on + strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.003 kb on - strand, within MPMX19_03880 at 134.035 kb on + strand, within MPMX19_03880 at 134.035 kb on + strand, within MPMX19_03880 at 134.035 kb on + strand, within MPMX19_03880 at 134.035 kb on + strand, within MPMX19_03880 at 134.036 kb on - strand, within MPMX19_03880 at 134.083 kb on + strand, within MPMX19_03880 at 134.083 kb on + strand, within MPMX19_03880 at 134.083 kb on + strand, within MPMX19_03880 at 134.083 kb on + strand, within MPMX19_03880 at 134.084 kb on - strand, within MPMX19_03880 at 134.084 kb on - strand, within MPMX19_03880 at 134.084 kb on - strand, within MPMX19_03880 at 134.084 kb on - strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.125 kb on + strand, within MPMX19_03880 at 134.126 kb on - strand, within MPMX19_03880 at 134.126 kb on - strand, within MPMX19_03880 at 134.126 kb on - strand, within MPMX19_03880 at 134.126 kb on - strand, within MPMX19_03880 at 134.126 kb on - strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.185 kb on + strand, within MPMX19_03880 at 134.186 kb on - strand, within MPMX19_03880 at 134.186 kb on - strand, within MPMX19_03880 at 134.186 kb on - strand, within MPMX19_03880
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 130,615 + MPMX19_03878 0.67 +1.5 130,616 - MPMX19_03878 0.67 +0.3 130,616 - MPMX19_03878 0.67 +0.2 130,673 + MPMX19_03878 0.69 -0.8 130,775 + MPMX19_03878 0.73 -1.0 130,775 + MPMX19_03878 0.73 -1.6 130,775 + MPMX19_03878 0.73 +0.5 130,775 + MPMX19_03878 0.73 -0.8 130,776 - MPMX19_03878 0.73 +0.9 130,776 - MPMX19_03878 0.73 -0.4 130,776 - MPMX19_03878 0.73 +0.4 130,793 + MPMX19_03878 0.74 -1.1 130,793 + MPMX19_03878 0.74 +0.6 130,813 + MPMX19_03878 0.75 +1.2 130,813 + MPMX19_03878 0.75 +0.4 130,813 + MPMX19_03878 0.75 -1.1 130,850 + MPMX19_03878 0.76 -0.5 130,850 + MPMX19_03878 0.76 +0.4 130,851 - MPMX19_03878 0.76 +1.4 130,991 + MPMX19_03878 0.81 +1.0 130,992 - MPMX19_03878 0.81 -0.4 130,992 - MPMX19_03878 0.81 -1.7 131,124 + MPMX19_03878 0.86 -0.0 131,189 + MPMX19_03878 0.88 -0.6 131,189 + MPMX19_03878 0.88 -1.6 131,189 + MPMX19_03878 0.88 +0.2 131,190 - MPMX19_03878 0.88 -0.2 131,190 - MPMX19_03878 0.88 +0.2 131,190 - MPMX19_03878 0.88 -0.1 131,240 + +1.4 131,240 + -1.6 131,240 + +0.8 131,241 - -0.8 131,241 - +0.9 131,241 - -2.1 131,241 - +0.1 131,286 - +1.1 131,477 + -0.8 131,477 + -0.6 131,477 + -0.8 131,477 + -0.5 131,477 + -0.6 131,477 + -1.4 131,478 - -1.5 131,478 - -0.1 131,478 - -0.6 131,478 - +1.2 131,596 + -0.4 132,046 + MPMX19_03879 0.30 -0.7 132,046 + MPMX19_03879 0.30 +1.7 132,047 - MPMX19_03879 0.30 -0.3 132,047 - MPMX19_03879 0.30 -2.2 132,047 - MPMX19_03879 0.30 +0.0 132,169 + MPMX19_03879 0.37 +0.0 132,169 + MPMX19_03879 0.37 -0.1 132,169 + MPMX19_03879 0.37 -0.0 132,169 + MPMX19_03879 0.37 -1.6 132,169 + MPMX19_03879 0.37 -1.2 132,169 + MPMX19_03879 0.37 +2.2 132,169 + MPMX19_03879 0.37 -1.6 132,169 + MPMX19_03879 0.37 +0.5 132,169 + MPMX19_03879 0.37 -0.1 132,169 + MPMX19_03879 0.37 -2.4 132,169 + MPMX19_03879 0.37 -1.4 132,169 + MPMX19_03879 0.37 -1.2 132,169 + MPMX19_03879 0.37 -2.0 132,170 - MPMX19_03879 0.37 -1.3 132,170 - MPMX19_03879 0.37 +0.3 132,170 - MPMX19_03879 0.37 +0.6 132,170 - MPMX19_03879 0.37 -0.7 132,170 - MPMX19_03879 0.37 +0.5 132,170 - MPMX19_03879 0.37 -0.9 132,170 - MPMX19_03879 0.37 +0.3 132,170 - MPMX19_03879 0.37 -0.0 132,170 - MPMX19_03879 0.37 +0.1 132,170 - MPMX19_03879 0.37 -1.2 132,170 - MPMX19_03879 0.37 -2.1 132,170 - MPMX19_03879 0.37 -0.4 132,187 + MPMX19_03879 0.38 -1.3 132,187 + MPMX19_03879 0.38 -0.1 132,412 + MPMX19_03879 0.51 -0.4 132,412 + MPMX19_03879 0.51 -1.0 132,412 + MPMX19_03879 0.51 +0.5 132,412 + MPMX19_03879 0.51 -0.4 132,412 + MPMX19_03879 0.51 -0.4 132,412 + MPMX19_03879 0.51 +0.2 132,413 - MPMX19_03879 0.51 -0.4 132,413 - MPMX19_03879 0.51 -1.4 132,413 - MPMX19_03879 0.51 -0.3 132,413 - MPMX19_03879 0.51 +0.6 132,413 - MPMX19_03879 0.51 +0.2 132,413 - MPMX19_03879 0.51 -0.2 132,413 - MPMX19_03879 0.51 -1.1 132,413 - MPMX19_03879 0.51 -1.2 132,413 - MPMX19_03879 0.51 +0.2 132,537 + MPMX19_03879 0.58 -0.5 132,538 - MPMX19_03879 0.58 +0.5 132,538 - MPMX19_03879 0.58 +1.0 132,591 - MPMX19_03879 0.61 -0.8 132,717 + MPMX19_03879 0.68 +0.0 132,717 + MPMX19_03879 0.68 -0.6 132,717 + MPMX19_03879 0.68 -0.7 132,717 + MPMX19_03879 0.68 -0.8 132,717 + MPMX19_03879 0.68 -0.4 132,717 + MPMX19_03879 0.68 -0.3 132,717 + MPMX19_03879 0.68 +0.1 132,717 + MPMX19_03879 0.68 +0.1 132,717 + MPMX19_03879 0.68 -0.6 132,717 + MPMX19_03879 0.68 +1.0 132,717 + MPMX19_03879 0.68 +1.5 132,717 + MPMX19_03879 0.68 -1.0 132,717 + MPMX19_03879 0.68 -2.0 132,718 - MPMX19_03879 0.68 -0.6 132,718 - MPMX19_03879 0.68 -1.3 132,718 - MPMX19_03879 0.68 -0.6 132,718 - MPMX19_03879 0.68 -0.7 132,718 - MPMX19_03879 0.68 +0.2 132,718 - MPMX19_03879 0.68 +0.6 132,718 - MPMX19_03879 0.68 -0.5 132,718 - MPMX19_03879 0.68 -0.3 132,718 - MPMX19_03879 0.68 -1.0 132,736 + MPMX19_03879 0.69 -0.1 132,736 + MPMX19_03879 0.69 -0.6 132,736 + MPMX19_03879 0.69 +0.4 132,736 + MPMX19_03879 0.69 -1.6 132,736 + MPMX19_03879 0.69 +0.1 132,736 + MPMX19_03879 0.69 -1.6 132,736 + MPMX19_03879 0.69 -0.4 132,736 + MPMX19_03879 0.69 -0.8 132,736 + MPMX19_03879 0.69 -0.3 132,736 + MPMX19_03879 0.69 +1.0 132,737 - MPMX19_03879 0.69 -1.3 132,737 - MPMX19_03879 0.69 +1.2 132,737 - MPMX19_03879 0.69 -1.1 132,737 - MPMX19_03879 0.69 -0.1 132,737 - MPMX19_03879 0.69 -0.6 132,737 - MPMX19_03879 0.69 -0.0 132,737 - MPMX19_03879 0.69 -0.7 132,737 - MPMX19_03879 0.69 -0.4 132,737 - MPMX19_03879 0.69 +0.4 132,760 + MPMX19_03879 0.71 -1.4 132,760 + MPMX19_03879 0.71 -2.0 132,760 + MPMX19_03879 0.71 -1.9 132,760 + MPMX19_03879 0.71 -0.8 132,761 - MPMX19_03879 0.71 -0.6 132,761 - MPMX19_03879 0.71 -1.5 132,761 - MPMX19_03879 0.71 -1.3 132,761 - MPMX19_03879 0.71 -1.0 132,761 - MPMX19_03879 0.71 +0.2 132,761 - MPMX19_03879 0.71 +0.4 133,522 + -0.7 133,523 - +0.4 133,669 + MPMX19_03880 0.13 -1.2 133,670 - MPMX19_03880 0.13 -1.9 133,670 - MPMX19_03880 0.13 +0.1 133,670 - MPMX19_03880 0.13 -0.7 134,002 + MPMX19_03880 0.25 -2.0 134,002 + MPMX19_03880 0.25 -0.1 134,002 + MPMX19_03880 0.25 +0.7 134,002 + MPMX19_03880 0.25 +0.6 134,002 + MPMX19_03880 0.25 -0.5 134,002 + MPMX19_03880 0.25 -0.1 134,003 - MPMX19_03880 0.25 +0.2 134,003 - MPMX19_03880 0.25 -1.7 134,003 - MPMX19_03880 0.25 +0.4 134,003 - MPMX19_03880 0.25 +0.2 134,003 - MPMX19_03880 0.25 -0.5 134,003 - MPMX19_03880 0.25 +0.1 134,003 - MPMX19_03880 0.25 -1.1 134,035 + MPMX19_03880 0.26 -0.5 134,035 + MPMX19_03880 0.26 -0.2 134,035 + MPMX19_03880 0.26 -0.3 134,035 + MPMX19_03880 0.26 -1.5 134,036 - MPMX19_03880 0.26 +0.6 134,083 + MPMX19_03880 0.28 -1.6 134,083 + MPMX19_03880 0.28 -0.4 134,083 + MPMX19_03880 0.28 +1.6 134,083 + MPMX19_03880 0.28 -0.5 134,084 - MPMX19_03880 0.28 -1.7 134,084 - MPMX19_03880 0.28 -0.7 134,084 - MPMX19_03880 0.28 -0.6 134,084 - MPMX19_03880 0.28 -0.7 134,125 + MPMX19_03880 0.29 -0.4 134,125 + MPMX19_03880 0.29 -1.5 134,125 + MPMX19_03880 0.29 -0.1 134,125 + MPMX19_03880 0.29 -2.4 134,125 + MPMX19_03880 0.29 -1.3 134,125 + MPMX19_03880 0.29 +1.0 134,125 + MPMX19_03880 0.29 -1.3 134,125 + MPMX19_03880 0.29 +0.2 134,126 - MPMX19_03880 0.29 +1.9 134,126 - MPMX19_03880 0.29 -0.5 134,126 - MPMX19_03880 0.29 -1.2 134,126 - MPMX19_03880 0.29 -1.1 134,126 - MPMX19_03880 0.29 +1.2 134,185 + MPMX19_03880 0.31 +0.6 134,185 + MPMX19_03880 0.31 -0.6 134,185 + MPMX19_03880 0.31 +0.9 134,185 + MPMX19_03880 0.31 -1.5 134,185 + MPMX19_03880 0.31 -0.2 134,185 + MPMX19_03880 0.31 +0.6 134,186 - MPMX19_03880 0.31 -0.8 134,186 - MPMX19_03880 0.31 +0.0 134,186 - MPMX19_03880 0.31 -1.7
Or see this region's nucleotide sequence