Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03860

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.3
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105,620	+	MPMX19_03858	0.80	-0.9
105,621	-	MPMX19_03858	0.80	+0.7
105,621	-	MPMX19_03858	0.80	-2.1
105,621	-	MPMX19_03858	0.80	+0.8
105,621	-	MPMX19_03858	0.80	+0.1
105,650	+	MPMX19_03858	0.83	+0.0
105,650	+	MPMX19_03858	0.83	-0.5
105,651	-	MPMX19_03858	0.83	+1.2
105,651	-	MPMX19_03858	0.83	-1.2
105,651	-	MPMX19_03858	0.83	+0.2
105,651	-	MPMX19_03858	0.83	+0.4
105,651	-	MPMX19_03858	0.83	+0.6
105,651	-	MPMX19_03858	0.83	+0.2
105,784	+			-0.8
105,784	+			-0.8
105,785	-			+0.4
105,807	-			+0.6
105,874	-			+0.0
105,896	+			-1.5
105,896	+			+0.6
105,896	+			-0.6
105,897	-			-1.3
105,897	-			+1.2
105,929	+			+0.1
105,929	+			-0.7
105,929	+			-1.0
105,929	+			+0.1
105,929	+			+0.4
105,929	+			-0.4
105,930	-			-1.6
105,930	-			+0.3
105,930	-			-0.1
105,937	-			-0.4
105,968	+			-1.0
105,968	+			-1.0
105,968	+			+0.2
105,968	+			-1.4
105,968	+			+1.2
105,968	+			-1.0
105,968	+			-1.3
105,968	+			-1.1
105,968	+			+0.8
106,113	+	MPMX19_03859	0.24	-1.1
106,114	-	MPMX19_03859	0.25	-0.3
106,114	-	MPMX19_03859	0.25	+0.7
106,114	-	MPMX19_03859	0.25	-0.1
106,114	-	MPMX19_03859	0.25	+0.2
106,115	+	MPMX19_03859	0.25	-1.6
106,115	+	MPMX19_03859	0.25	+1.6
106,179	+	MPMX19_03859	0.36	-0.1
106,179	+	MPMX19_03859	0.36	-0.6
106,180	-	MPMX19_03859	0.36	-0.6
106,245	+	MPMX19_03859	0.47	-0.3
106,246	-	MPMX19_03859	0.47	-1.5
106,246	-	MPMX19_03859	0.47	+0.6
106,535	+			-0.2
106,670	+	MPMX19_03860	0.11	-1.0
106,670	+	MPMX19_03860	0.11	-1.7
106,671	-	MPMX19_03860	0.12	-0.3
106,671	-	MPMX19_03860	0.12	-1.2
106,671	-	MPMX19_03860	0.12	+0.1
106,671	-	MPMX19_03860	0.12	+0.6
106,693	+	MPMX19_03860	0.15	-2.1
106,693	+	MPMX19_03860	0.15	-0.8
106,693	+	MPMX19_03860	0.15	-0.4
106,693	+	MPMX19_03860	0.15	-1.3
106,730	+	MPMX19_03860	0.21	+0.4
106,736	+	MPMX19_03860	0.22	-1.5
106,736	+	MPMX19_03860	0.22	+0.1
106,736	+	MPMX19_03860	0.22	-0.4
106,737	-	MPMX19_03860	0.22	-0.0
106,737	-	MPMX19_03860	0.22	+0.2
106,737	-	MPMX19_03860	0.22	+1.2
106,769	+	MPMX19_03860	0.27	+0.9
106,769	+	MPMX19_03860	0.27	-0.3
106,769	+	MPMX19_03860	0.27	-0.2
106,769	+	MPMX19_03860	0.27	+0.0
106,769	+	MPMX19_03860	0.27	+0.2
106,769	+	MPMX19_03860	0.27	-0.1
106,769	+	MPMX19_03860	0.27	+0.0
106,769	+	MPMX19_03860	0.27	-0.6
106,769	+	MPMX19_03860	0.27	-1.9
106,769	+	MPMX19_03860	0.27	+0.2
106,769	+	MPMX19_03860	0.27	-1.5
106,770	-	MPMX19_03860	0.27	+0.2
106,770	-	MPMX19_03860	0.27	-0.3
106,770	-	MPMX19_03860	0.27	-1.3
106,770	-	MPMX19_03860	0.27	-2.0
106,770	-	MPMX19_03860	0.27	-1.1
106,770	-	MPMX19_03860	0.27	+0.4
106,770	-	MPMX19_03860	0.27	-0.3
106,770	-	MPMX19_03860	0.27	+0.8
106,770	-	MPMX19_03860	0.27	-1.4
106,770	-	MPMX19_03860	0.27	+0.6
106,770	-	MPMX19_03860	0.27	-1.9
106,770	-	MPMX19_03860	0.27	+1.2
106,770	-	MPMX19_03860	0.27	+0.4
106,770	-	MPMX19_03860	0.27	-0.2
106,770	-	MPMX19_03860	0.27	-0.6
106,770	-	MPMX19_03860	0.27	-0.7
106,770	-	MPMX19_03860	0.27	-1.9
106,770	-	MPMX19_03860	0.27	+0.2
106,770	-	MPMX19_03860	0.27	-1.1
106,770	-	MPMX19_03860	0.27	+0.6
106,770	-	MPMX19_03860	0.27	-0.3
106,770	-	MPMX19_03860	0.27	+1.5
106,845	+	MPMX19_03860	0.39	-0.8
106,845	+	MPMX19_03860	0.39	-1.1
106,845	+	MPMX19_03860	0.39	-0.0
106,845	+	MPMX19_03860	0.39	-1.1
106,868	+	MPMX19_03860	0.43	-0.7
106,869	-	MPMX19_03860	0.43	+0.1
106,881	+	MPMX19_03860	0.45	-1.6
106,881	+	MPMX19_03860	0.45	+0.6
106,881	+	MPMX19_03860	0.45	-1.5
106,881	+	MPMX19_03860	0.45	+0.2
106,881	+	MPMX19_03860	0.45	-0.8
106,881	+	MPMX19_03860	0.45	+0.9
106,881	+	MPMX19_03860	0.45	-1.0
106,882	-	MPMX19_03860	0.45	-1.9
106,882	-	MPMX19_03860	0.45	+0.6
106,882	-	MPMX19_03860	0.45	-0.1
106,882	-	MPMX19_03860	0.45	-0.8
106,882	-	MPMX19_03860	0.45	-0.6
106,882	-	MPMX19_03860	0.45	-0.1
106,882	-	MPMX19_03860	0.45	-0.6
106,882	-	MPMX19_03860	0.45	+1.1
106,883	-	MPMX19_03860	0.45	-1.0
106,962	-	MPMX19_03860	0.58	-1.1
107,004	+	MPMX19_03860	0.64	-0.1
107,004	+	MPMX19_03860	0.64	+1.0
107,004	+	MPMX19_03860	0.64	-0.9
107,004	+	MPMX19_03860	0.64	-1.5
107,004	+	MPMX19_03860	0.64	-0.5
107,005	-	MPMX19_03860	0.64	-1.0
107,034	+	MPMX19_03860	0.69	-1.3
107,034	+	MPMX19_03860	0.69	-0.3
107,035	-	MPMX19_03860	0.69	-0.7
107,127	+	MPMX19_03860	0.84	-0.8
107,127	+	MPMX19_03860	0.84	-0.3
107,127	+	MPMX19_03860	0.84	+2.2
107,127	+	MPMX19_03860	0.84	+0.8
107,127	+	MPMX19_03860	0.84	+0.6
107,127	+	MPMX19_03860	0.84	+0.9
107,127	+	MPMX19_03860	0.84	-0.6
107,127	+	MPMX19_03860	0.84	-0.3
107,127	+	MPMX19_03860	0.84	-0.4
107,127	+	MPMX19_03860	0.84	+0.2
107,128	-	MPMX19_03860	0.84	-2.1
107,128	-	MPMX19_03860	0.84	-0.3
107,128	-	MPMX19_03860	0.84	-2.1
107,128	-	MPMX19_03860	0.84	+1.2
107,128	-	MPMX19_03860	0.84	-0.1
107,128	-	MPMX19_03860	0.84	-0.1
107,128	-	MPMX19_03860	0.84	+0.5
107,128	-	MPMX19_03860	0.84	-0.8
107,128	-	MPMX19_03860	0.84	-1.1
107,129	+	MPMX19_03860	0.84	+0.5
107,129	+	MPMX19_03860	0.84	+0.4
107,129	+	MPMX19_03860	0.84	-1.1
107,129	+	MPMX19_03860	0.84	+0.5
107,130	-	MPMX19_03860	0.84	-1.3
107,130	-	MPMX19_03860	0.84	-1.8
107,130	-	MPMX19_03860	0.84	+1.2
107,207	+			-1.8
107,208	-			-0.0
107,326	+			+0.9
107,327	-			-0.6
107,327	-			-1.5
107,327	-			+1.2
107,327	-			-2.1
107,327	-			-1.3
107,561	+			-0.4
107,562	-			-1.0
107,562	-			+0.2
107,562	-			-0.6
107,562	-			+0.5
107,562	-			+0.0
107,574	+			-0.4
107,574	+			+0.4
107,574	+			-0.8
107,574	+			+0.4
107,575	-			+2.2
107,575	-			-1.4
107,575	-			-1.3
107,575	-			-0.1
107,700	+			+0.2
107,700	+			-1.3
107,700	+			+1.6
107,700	+			-1.1
107,700	+			+1.2
107,701	-			+0.2
107,701	-			+0.4
107,701	-			-0.8
107,701	-			+0.6
107,703	+			-1.5
107,703	+			-0.0
107,703	+			+0.5
107,703	+			-1.1
107,703	+			+0.5
107,703	+			+1.2
107,703	+			-0.8
107,703	+			-0.1
107,703	+			+1.5
107,704	-			+3.0
107,704	-			-0.6
107,704	-			+1.0
107,704	-			+0.5
107,704	-			+0.6
107,704	-			-0.6
107,704	-			-0.0
107,704	-			-0.8
107,704	-			+0.7
107,704	-			+0.2
107,704	-			-0.1
107,704	-			+0.4
107,704	-			-1.1
107,705	-			-0.4
107,712	+			-0.5
107,772	+	MPMX19_03861	0.16	-0.1
107,772	+	MPMX19_03861	0.16	-0.9
107,772	+	MPMX19_03861	0.16	-0.5
107,772	+	MPMX19_03861	0.16	-0.6
107,772	+	MPMX19_03861	0.16	-1.2
107,772	+	MPMX19_03861	0.16	+0.2
107,772	+	MPMX19_03861	0.16	-0.1
107,772	+	MPMX19_03861	0.16	+0.6
107,772	+	MPMX19_03861	0.16	-0.8
107,772	+	MPMX19_03861	0.16	-1.3
107,772	+	MPMX19_03861	0.16	-0.6
107,772	+	MPMX19_03861	0.16	-1.0
107,773	-	MPMX19_03861	0.16	+0.4
107,773	-	MPMX19_03861	0.16	-0.6
107,773	-	MPMX19_03861	0.16	+0.5
107,773	-	MPMX19_03861	0.16	+0.1
107,773	-	MPMX19_03861	0.16	+0.5
107,773	-	MPMX19_03861	0.16	-0.6
107,773	-	MPMX19_03861	0.16	-1.4
107,773	-	MPMX19_03861	0.16	-1.7
107,773	-	MPMX19_03861	0.16	+0.1
107,773	-	MPMX19_03861	0.16	-0.2
107,773	-	MPMX19_03861	0.16	+1.2
107,799	+	MPMX19_03861	0.19	+0.2
107,799	+	MPMX19_03861	0.19	+1.5
107,799	+	MPMX19_03861	0.19	+0.4
107,799	+	MPMX19_03861	0.19	-1.7
107,799	+	MPMX19_03861	0.19	+0.6
107,799	+	MPMX19_03861	0.19	+0.0
107,799	+	MPMX19_03861	0.19	-0.1
107,799	+	MPMX19_03861	0.19	-1.0
107,799	+	MPMX19_03861	0.19	-0.5
107,800	-	MPMX19_03861	0.19	+2.2
107,800	-	MPMX19_03861	0.19	-1.4
107,800	-	MPMX19_03861	0.19	+0.4
107,800	-	MPMX19_03861	0.19	-0.0
107,800	-	MPMX19_03861	0.19	+0.2
107,800	-	MPMX19_03861	0.19	-0.2
107,800	-	MPMX19_03861	0.19	+0.6
107,800	-	MPMX19_03861	0.19	-0.4
107,800	-	MPMX19_03861	0.19	+0.0
107,800	-	MPMX19_03861	0.19	+0.9
107,800	-	MPMX19_03861	0.19	-1.1
107,800	-	MPMX19_03861	0.19	-0.4
107,916	+	MPMX19_03861	0.32	+1.2
107,916	+	MPMX19_03861	0.32	-0.8
107,916	+	MPMX19_03861	0.32	-1.6
107,917	-	MPMX19_03861	0.32	+1.9
108,006	+	MPMX19_03861	0.42	-1.6
108,006	+	MPMX19_03861	0.42	-0.0
108,006	+	MPMX19_03861	0.42	-0.3
108,006	+	MPMX19_03861	0.42	+0.5
108,007	-	MPMX19_03861	0.42	+0.6
108,052	+	MPMX19_03861	0.47	+0.0
108,052	+	MPMX19_03861	0.47	-1.2
108,136	-	MPMX19_03861	0.56	-0.5
108,136	-	MPMX19_03861	0.56	-1.1
108,168	+	MPMX19_03861	0.60	-1.1
108,169	-	MPMX19_03861	0.60	-0.4
108,219	+	MPMX19_03861	0.66	+0.9
108,219	+	MPMX19_03861	0.66	+0.4
108,219	+	MPMX19_03861	0.66	+0.0
108,219	+	MPMX19_03861	0.66	+0.6
108,219	+	MPMX19_03861	0.66	+0.3
108,219	+	MPMX19_03861	0.66	-0.5
108,219	+	MPMX19_03861	0.66	+0.4
108,219	+	MPMX19_03861	0.66	-0.1
108,220	-	MPMX19_03861	0.66	-0.4
108,220	-	MPMX19_03861	0.66	+0.6
108,220	-	MPMX19_03861	0.66	+0.6
108,220	-	MPMX19_03861	0.66	+1.0
108,220	-	MPMX19_03861	0.66	-2.1

Or see this region's nucleotide sequence