Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03851 and MPMX19_03852 are separated by 121 nucleotides MPMX19_03852 and MPMX19_03853 are separated by 156 nucleotides MPMX19_03853 and MPMX19_03854 are separated by 300 nucleotides
MPMX19_03851: MPMX19_03851 - hypothetical protein, at 94,107 to 95,192
_03851
MPMX19_03852: MPMX19_03852 - 4-alpha-glucanotransferase, at 95,314 to 97,503
_03852
MPMX19_03853: MPMX19_03853 - tRNA-Gln, at 97,660 to 97,733
_03853
MPMX19_03854: MPMX19_03854 - hypothetical protein, at 98,034 to 99,077
_03854
Position (kb) 95
96
97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 94.502 kb on + strand, within MPMX19_03851 at 94.502 kb on + strand, within MPMX19_03851 at 94.503 kb on - strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.272 kb on + strand at 95.273 kb on - strand at 95.273 kb on - strand at 95.273 kb on - strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.362 kb on + strand at 95.362 kb on + strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.476 kb on - strand at 95.476 kb on - strand at 95.689 kb on + strand, within MPMX19_03852 at 95.690 kb on - strand, within MPMX19_03852 at 95.690 kb on - strand, within MPMX19_03852 at 95.740 kb on + strand, within MPMX19_03852 at 95.741 kb on - strand, within MPMX19_03852 at 95.741 kb on - strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.187 kb on + strand, within MPMX19_03852 at 96.187 kb on + strand, within MPMX19_03852 at 96.188 kb on - strand, within MPMX19_03852 at 96.281 kb on - strand, within MPMX19_03852 at 96.553 kb on + strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.983 kb on - strand, within MPMX19_03852 at 96.994 kb on + strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 97.039 kb on + strand, within MPMX19_03852 at 97.243 kb on + strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.797 kb on - strand at 97.797 kb on - strand at 97.849 kb on + strand at 97.850 kb on - strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.235 kb on + strand, within MPMX19_03854 at 98.235 kb on + strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.441 kb on - strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 94,502 + MPMX19_03851 0.36 +0.2 94,502 + MPMX19_03851 0.36 -1.0 94,503 - MPMX19_03851 0.36 -0.4 94,527 + MPMX19_03851 0.39 -1.0 94,527 + MPMX19_03851 0.39 -1.5 94,527 + MPMX19_03851 0.39 -0.2 94,527 + MPMX19_03851 0.39 -1.7 94,527 + MPMX19_03851 0.39 +1.4 94,527 + MPMX19_03851 0.39 -1.4 94,527 + MPMX19_03851 0.39 -1.0 94,527 + MPMX19_03851 0.39 -2.1 94,528 - MPMX19_03851 0.39 +0.0 94,528 - MPMX19_03851 0.39 +0.6 94,528 - MPMX19_03851 0.39 -0.1 94,528 - MPMX19_03851 0.39 -0.4 94,528 - MPMX19_03851 0.39 -0.3 95,226 + +0.3 95,226 + -0.6 95,226 + -2.2 95,226 + -1.4 95,226 + -2.0 95,226 + -2.5 95,227 - +0.9 95,227 - -0.4 95,227 - -0.6 95,227 - +0.6 95,272 + +0.6 95,273 - -0.5 95,273 - -1.1 95,273 - +0.5 95,293 + -0.0 95,293 + -0.9 95,293 + +0.3 95,293 + -0.5 95,293 + -0.4 95,293 + -0.3 95,294 - -2.3 95,294 - -0.8 95,294 - -0.5 95,294 - -0.1 95,294 - -1.4 95,294 - -0.6 95,294 - -1.6 95,294 - -1.0 95,294 - -0.5 95,294 - -0.3 95,294 - -0.1 95,362 + -0.6 95,362 + +0.4 95,363 - -1.0 95,363 - +0.4 95,363 - -0.7 95,363 - -0.6 95,475 + -1.3 95,475 + +0.3 95,475 + -1.3 95,475 + -0.8 95,476 - -1.6 95,476 - -0.2 95,689 + MPMX19_03852 0.17 -0.7 95,690 - MPMX19_03852 0.17 +0.0 95,690 - MPMX19_03852 0.17 +0.8 95,740 + MPMX19_03852 0.19 +0.3 95,741 - MPMX19_03852 0.19 +0.2 95,741 - MPMX19_03852 0.19 -0.4 95,884 + MPMX19_03852 0.26 +0.5 95,884 + MPMX19_03852 0.26 -1.5 95,884 + MPMX19_03852 0.26 -2.1 95,884 + MPMX19_03852 0.26 -0.7 95,884 + MPMX19_03852 0.26 -0.7 95,884 + MPMX19_03852 0.26 +0.0 95,884 + MPMX19_03852 0.26 -0.5 95,884 + MPMX19_03852 0.26 +1.0 95,885 - MPMX19_03852 0.26 +0.7 95,885 - MPMX19_03852 0.26 -1.5 95,885 - MPMX19_03852 0.26 +1.0 95,885 - MPMX19_03852 0.26 +0.0 96,070 + MPMX19_03852 0.35 +0.4 96,070 + MPMX19_03852 0.35 -0.4 96,070 + MPMX19_03852 0.35 +1.0 96,070 + MPMX19_03852 0.35 +1.0 96,070 + MPMX19_03852 0.35 -1.9 96,070 + MPMX19_03852 0.35 -0.1 96,070 + MPMX19_03852 0.35 -0.5 96,070 + MPMX19_03852 0.35 -1.0 96,071 - MPMX19_03852 0.35 +0.1 96,071 - MPMX19_03852 0.35 -0.1 96,071 - MPMX19_03852 0.35 -0.3 96,071 - MPMX19_03852 0.35 -0.4 96,071 - MPMX19_03852 0.35 -1.1 96,071 - MPMX19_03852 0.35 +0.5 96,071 - MPMX19_03852 0.35 -0.1 96,071 - MPMX19_03852 0.35 +0.3 96,071 - MPMX19_03852 0.35 -0.4 96,071 - MPMX19_03852 0.35 +0.5 96,071 - MPMX19_03852 0.35 -1.5 96,071 - MPMX19_03852 0.35 -1.0 96,071 - MPMX19_03852 0.35 +0.1 96,071 - MPMX19_03852 0.35 -0.5 96,071 - MPMX19_03852 0.35 +0.2 96,071 - MPMX19_03852 0.35 +0.0 96,071 - MPMX19_03852 0.35 -0.5 96,071 - MPMX19_03852 0.35 -0.6 96,187 + MPMX19_03852 0.40 +0.1 96,187 + MPMX19_03852 0.40 -0.9 96,188 - MPMX19_03852 0.40 +1.0 96,281 - MPMX19_03852 0.44 -0.1 96,553 + MPMX19_03852 0.57 -0.1 96,554 - MPMX19_03852 0.57 -0.4 96,554 - MPMX19_03852 0.57 -1.1 96,554 - MPMX19_03852 0.57 -1.7 96,841 + MPMX19_03852 0.70 -1.0 96,841 + MPMX19_03852 0.70 -0.6 96,841 + MPMX19_03852 0.70 -1.5 96,841 + MPMX19_03852 0.70 -1.1 96,841 + MPMX19_03852 0.70 -1.1 96,842 - MPMX19_03852 0.70 -1.1 96,842 - MPMX19_03852 0.70 -0.3 96,842 - MPMX19_03852 0.70 -2.6 96,842 - MPMX19_03852 0.70 -1.1 96,842 - MPMX19_03852 0.70 +0.6 96,851 - MPMX19_03852 0.70 +1.0 96,851 - MPMX19_03852 0.70 +0.6 96,851 - MPMX19_03852 0.70 -1.6 96,851 - MPMX19_03852 0.70 -0.9 96,851 - MPMX19_03852 0.70 -0.6 96,983 - MPMX19_03852 0.76 +0.2 96,994 + MPMX19_03852 0.77 -0.5 96,995 - MPMX19_03852 0.77 -1.2 96,995 - MPMX19_03852 0.77 -1.0 96,995 - MPMX19_03852 0.77 +0.7 96,995 - MPMX19_03852 0.77 -0.4 97,039 + MPMX19_03852 0.79 -0.8 97,243 + MPMX19_03852 0.88 -1.6 97,244 - MPMX19_03852 0.88 +0.3 97,244 - MPMX19_03852 0.88 -0.5 97,244 - MPMX19_03852 0.88 -1.1 97,244 - MPMX19_03852 0.88 +0.4 97,244 - MPMX19_03852 0.88 +0.2 97,244 - MPMX19_03852 0.88 -0.6 97,244 - MPMX19_03852 0.88 -1.3 97,244 - MPMX19_03852 0.88 -1.0 97,244 - MPMX19_03852 0.88 -0.4 97,303 + -1.4 97,303 + -0.5 97,303 + -2.3 97,303 + -0.8 97,303 + -2.5 97,303 + +0.2 97,303 + -0.9 97,303 + +0.5 97,303 + -0.1 97,303 + -1.8 97,303 + -1.9 97,303 + +0.8 97,303 + -1.7 97,303 + -1.1 97,303 + +0.3 97,304 - -0.3 97,304 - +0.8 97,304 - +1.5 97,304 - -1.6 97,304 - -0.8 97,304 - +1.2 97,304 - -0.5 97,304 - +0.1 97,304 - -2.3 97,304 - +0.2 97,304 - -2.0 97,304 - -0.1 97,304 - +0.5 97,304 - -0.8 97,304 - -1.3 97,304 - -1.0 97,797 - +0.3 97,797 - +0.8 97,849 + -0.8 97,850 - -0.1 98,010 + +1.2 98,010 + -0.7 98,010 + -0.3 98,010 + -2.5 98,010 + +0.5 98,010 + +0.8 98,010 + -0.1 98,010 + +0.4 98,011 - -0.3 98,011 - -0.4 98,011 - +0.2 98,011 - -0.1 98,011 - -1.0 98,011 - -0.8 98,011 - +0.4 98,011 - +0.2 98,019 + +0.2 98,019 + -0.8 98,019 + +0.5 98,019 + -0.4 98,019 + -1.0 98,019 + -1.8 98,019 + +0.4 98,020 - +0.6 98,020 - -0.9 98,020 - -1.0 98,020 - -1.3 98,035 + +1.2 98,035 + -0.8 98,035 + -1.5 98,035 + -0.3 98,035 + -1.1 98,035 + -1.3 98,035 + -0.7 98,035 + -1.8 98,035 + -1.5 98,035 + -0.4 98,036 - -0.6 98,036 - -0.4 98,036 - -1.5 98,036 - -0.6 98,036 - -0.6 98,036 - +0.3 98,036 - -1.1 98,036 - +0.6 98,036 - +0.4 98,235 + MPMX19_03854 0.19 -1.5 98,235 + MPMX19_03854 0.19 +0.5 98,236 - MPMX19_03854 0.19 -0.4 98,236 - MPMX19_03854 0.19 +0.6 98,236 - MPMX19_03854 0.19 -0.8 98,236 - MPMX19_03854 0.19 -0.6 98,236 - MPMX19_03854 0.19 -1.1 98,440 + MPMX19_03854 0.39 -1.1 98,440 + MPMX19_03854 0.39 -2.3 98,440 + MPMX19_03854 0.39 +0.3 98,441 - MPMX19_03854 0.39 -1.8 98,458 + MPMX19_03854 0.41 +0.9 98,458 + MPMX19_03854 0.41 -0.5 98,458 + MPMX19_03854 0.41 -1.0 98,458 + MPMX19_03854 0.41 -2.2 98,458 + MPMX19_03854 0.41 +0.9 98,459 - MPMX19_03854 0.41 -1.5 98,459 - MPMX19_03854 0.41 -0.1
Or see this region's nucleotide sequence