Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03851

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03850 and MPMX19_03851 are separated by 181 nucleotidesMPMX19_03851 and MPMX19_03852 are separated by 121 nucleotides MPMX19_03850: MPMX19_03850 - Glycogen operon protein GlgX, at 91,787 to 93,925 _03850 MPMX19_03851: MPMX19_03851 - hypothetical protein, at 94,107 to 95,192 _03851 MPMX19_03852: MPMX19_03852 - 4-alpha-glucanotransferase, at 95,314 to 97,503 _03852 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 93.191 kb on + strand, within MPMX19_03850at 93.191 kb on + strand, within MPMX19_03850at 93.192 kb on - strand, within MPMX19_03850at 93.192 kb on - strand, within MPMX19_03850at 93.419 kb on + strand, within MPMX19_03850at 93.419 kb on + strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.590 kb on + strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 94.026 kb on + strandat 94.027 kb on - strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.100 kb on + strandat 94.117 kb on - strandat 94.502 kb on + strand, within MPMX19_03851at 94.502 kb on + strand, within MPMX19_03851at 94.503 kb on - strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 95.226 kb on + strandat 95.226 kb on + strandat 95.226 kb on + strandat 95.226 kb on + strandat 95.226 kb on + strandat 95.226 kb on + strandat 95.227 kb on - strandat 95.227 kb on - strandat 95.227 kb on - strandat 95.227 kb on - strandat 95.272 kb on + strandat 95.273 kb on - strandat 95.273 kb on - strandat 95.273 kb on - strandat 95.293 kb on + strandat 95.293 kb on + strandat 95.293 kb on + strandat 95.293 kb on + strandat 95.293 kb on + strandat 95.293 kb on + strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.294 kb on - strandat 95.362 kb on + strandat 95.362 kb on + strandat 95.363 kb on - strandat 95.363 kb on - strandat 95.363 kb on - strandat 95.363 kb on - strandat 95.475 kb on + strandat 95.475 kb on + strandat 95.475 kb on + strandat 95.475 kb on + strandat 95.476 kb on - strandat 95.476 kb on - strandat 95.689 kb on + strand, within MPMX19_03852at 95.690 kb on - strand, within MPMX19_03852at 95.690 kb on - strand, within MPMX19_03852at 95.740 kb on + strand, within MPMX19_03852at 95.741 kb on - strand, within MPMX19_03852at 95.741 kb on - strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.884 kb on + strand, within MPMX19_03852at 95.885 kb on - strand, within MPMX19_03852at 95.885 kb on - strand, within MPMX19_03852at 95.885 kb on - strand, within MPMX19_03852at 95.885 kb on - strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.070 kb on + strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.071 kb on - strand, within MPMX19_03852at 96.187 kb on + strand, within MPMX19_03852at 96.187 kb on + strand, within MPMX19_03852at 96.188 kb on - strand, within MPMX19_03852

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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93,191 + MPMX19_03850 0.66 -0.4
93,191 + MPMX19_03850 0.66 -0.6
93,192 - MPMX19_03850 0.66 -1.4
93,192 - MPMX19_03850 0.66 -1.6
93,419 + MPMX19_03850 0.76 -0.6
93,419 + MPMX19_03850 0.76 -1.3
93,420 - MPMX19_03850 0.76 -1.4
93,420 - MPMX19_03850 0.76 -0.8
93,420 - MPMX19_03850 0.76 -1.2
93,420 - MPMX19_03850 0.76 -0.6
93,420 - MPMX19_03850 0.76 +0.0
93,420 - MPMX19_03850 0.76 +0.3
93,420 - MPMX19_03850 0.76 +0.2
93,420 - MPMX19_03850 0.76 +1.9
93,420 - MPMX19_03850 0.76 -1.2
93,420 - MPMX19_03850 0.76 +0.2
93,590 + MPMX19_03850 0.84 -0.4
93,591 - MPMX19_03850 0.84 -1.9
93,591 - MPMX19_03850 0.84 -1.1
93,591 - MPMX19_03850 0.84 -1.8
94,026 + -2.9
94,027 - -1.4
94,054 + -2.0
94,054 + +0.2
94,054 + -0.8
94,054 + -1.1
94,054 + +0.6
94,054 + -0.1
94,055 - -1.0
94,055 - -0.8
94,055 - -0.8
94,055 - -1.4
94,055 - -0.3
94,100 + +3.6
94,117 - -0.0
94,502 + MPMX19_03851 0.36 +0.2
94,502 + MPMX19_03851 0.36 -1.0
94,503 - MPMX19_03851 0.36 -0.4
94,527 + MPMX19_03851 0.39 -1.0
94,527 + MPMX19_03851 0.39 -1.5
94,527 + MPMX19_03851 0.39 -0.2
94,527 + MPMX19_03851 0.39 -1.7
94,527 + MPMX19_03851 0.39 +1.4
94,527 + MPMX19_03851 0.39 -1.4
94,527 + MPMX19_03851 0.39 -1.0
94,527 + MPMX19_03851 0.39 -2.1
94,528 - MPMX19_03851 0.39 +0.0
94,528 - MPMX19_03851 0.39 +0.6
94,528 - MPMX19_03851 0.39 -0.1
94,528 - MPMX19_03851 0.39 -0.4
94,528 - MPMX19_03851 0.39 -0.3
95,226 + +0.3
95,226 + -0.6
95,226 + -2.2
95,226 + -1.4
95,226 + -2.0
95,226 + -2.5
95,227 - +0.9
95,227 - -0.4
95,227 - -0.6
95,227 - +0.6
95,272 + +0.6
95,273 - -0.5
95,273 - -1.1
95,273 - +0.5
95,293 + -0.0
95,293 + -0.9
95,293 + +0.3
95,293 + -0.5
95,293 + -0.4
95,293 + -0.3
95,294 - -2.3
95,294 - -0.8
95,294 - -0.5
95,294 - -0.1
95,294 - -1.4
95,294 - -0.6
95,294 - -1.6
95,294 - -1.0
95,294 - -0.5
95,294 - -0.3
95,294 - -0.1
95,362 + -0.6
95,362 + +0.4
95,363 - -1.0
95,363 - +0.4
95,363 - -0.7
95,363 - -0.6
95,475 + -1.3
95,475 + +0.3
95,475 + -1.3
95,475 + -0.8
95,476 - -1.6
95,476 - -0.2
95,689 + MPMX19_03852 0.17 -0.7
95,690 - MPMX19_03852 0.17 +0.0
95,690 - MPMX19_03852 0.17 +0.8
95,740 + MPMX19_03852 0.19 +0.3
95,741 - MPMX19_03852 0.19 +0.2
95,741 - MPMX19_03852 0.19 -0.4
95,884 + MPMX19_03852 0.26 +0.5
95,884 + MPMX19_03852 0.26 -1.5
95,884 + MPMX19_03852 0.26 -2.1
95,884 + MPMX19_03852 0.26 -0.7
95,884 + MPMX19_03852 0.26 -0.7
95,884 + MPMX19_03852 0.26 +0.0
95,884 + MPMX19_03852 0.26 -0.5
95,884 + MPMX19_03852 0.26 +1.0
95,885 - MPMX19_03852 0.26 +0.7
95,885 - MPMX19_03852 0.26 -1.5
95,885 - MPMX19_03852 0.26 +1.0
95,885 - MPMX19_03852 0.26 +0.0
96,070 + MPMX19_03852 0.35 +0.4
96,070 + MPMX19_03852 0.35 -0.4
96,070 + MPMX19_03852 0.35 +1.0
96,070 + MPMX19_03852 0.35 +1.0
96,070 + MPMX19_03852 0.35 -1.9
96,070 + MPMX19_03852 0.35 -0.1
96,070 + MPMX19_03852 0.35 -0.5
96,070 + MPMX19_03852 0.35 -1.0
96,071 - MPMX19_03852 0.35 +0.1
96,071 - MPMX19_03852 0.35 -0.1
96,071 - MPMX19_03852 0.35 -0.3
96,071 - MPMX19_03852 0.35 -0.4
96,071 - MPMX19_03852 0.35 -1.1
96,071 - MPMX19_03852 0.35 +0.5
96,071 - MPMX19_03852 0.35 -0.1
96,071 - MPMX19_03852 0.35 +0.3
96,071 - MPMX19_03852 0.35 -0.4
96,071 - MPMX19_03852 0.35 +0.5
96,071 - MPMX19_03852 0.35 -1.5
96,071 - MPMX19_03852 0.35 -1.0
96,071 - MPMX19_03852 0.35 +0.1
96,071 - MPMX19_03852 0.35 -0.5
96,071 - MPMX19_03852 0.35 +0.2
96,071 - MPMX19_03852 0.35 +0.0
96,071 - MPMX19_03852 0.35 -0.5
96,071 - MPMX19_03852 0.35 -0.6
96,187 + MPMX19_03852 0.40 +0.1
96,187 + MPMX19_03852 0.40 -0.9
96,188 - MPMX19_03852 0.40 +1.0

Or see this region's nucleotide sequence